BCO-DMO ERDDAP
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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739077/ public Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (Bio Project, unitless)\nstudy (unitless)\nsample_description (unitless)\nyear (unitless)\nnum_sequences (unitless)\nNCBI_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_739077_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739077/index.htmlTable https://www.bco-dmo.org/dataset/739077 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739077.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739077&showErrors=false&email= BCO-DMO bcodmo_dataset_739077
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_675040 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_675040/ public Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project) This dataset reports Salpa thompsoni specimens used for\ngenomics/transcriptomics with their GenBank accession links.\n \nRelated Dataset: [Salp sample log](\\\\https://www.bco-\ndmo.org/dataset/672600\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nspecimen (unitless)\ncruise_id (unitless)\nstation (unitless)\nlength (millimeters)\nSRA_accession (unitless)\nBioSample_accession (Bio Sample Accession, unitless)\nSRA_accession_link (unitless)\nBioSample_accession_link (Bio Sample Accession Link, unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_675040_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_675040/index.htmlTable https://www.bco-dmo.org/dataset/675040 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_675040.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_675040&showErrors=false&email= BCO-DMO bcodmo_dataset_675040
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762497/ public Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndate (unitless)\ncolony (unitless)\nbleaching_status (percent (%))\naccession (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nspecies (unitless)\naccession_link (untiless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_762497_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762497/index.htmlTable https://www.bco-dmo.org/dataset/762497 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762497.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762497&showErrors=false&email= BCO-DMO bcodmo_dataset_762497
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_747948/ public Illumina sequencing data from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin Illumina sequencing data (NCBI accession numbers) from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin.\n\ncdm_data_type = Other\nVARIABLES:\nsequence_accession_number (unitless)\nlink (unitless)\nSpecies_Names (unitless)\ndescription_of_the_types_of_sequences (unitless)\nlocations_where_species_were_collected (unitless)\nlatitude_dms (Latitude, unitless)\nlongitude_dms (Longitude, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nVessel (unitless)\nDive_number (unitless)\nsequencing_and_analysis_methods (unitless)\ninstrument_and_model (unitless)\nAnalysis_methods (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_747948_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_747948/index.htmlTable https://www.bco-dmo.org/dataset/747948 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_747948.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_747948&showErrors=false&email= BCO-DMO bcodmo_dataset_747948
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742780.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742780 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742780.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742780/ public Microbial enzyme activities: peptidase activities in bulk seawater samples from the RV\\\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 This dataset includes peptidase activities measured in bulk (not filter-fractionated) seawater. Links to archived CTD data are also provided. Five substrates linked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013 leucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates alanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine (AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and glutamic acid-gylcine-arginine (EGR) \\u2013 were used to measure exo- and endo-acting peptidase activities, respectively.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth_m (Depth, meters)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_742780_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742780/index.htmlTable https://www.bco-dmo.org/dataset/742780 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742780.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742780&showErrors=false&email= BCO-DMO bcodmo_dataset_742780
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742967.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742967 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742967.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742967/ public Microbial enzyme activities: peptidase activities of gravity-filtered seawater samples from the RV\\\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 This dataset includes microbial peptidase hydrolysis rates measured on particles collected from gravity filtered seawater. Links to archived CTD data are also provided. Five substrates linked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013 leucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates alanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine (AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and glutamic acid-gylcine-arginine (EGR) \\u2013 were used to measure exo- and endo-acting peptidase activities, respectively.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\nfilter_um (microns)\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_742967_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742967/index.htmlTable https://www.bco-dmo.org/dataset/742967 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742967.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742967&showErrors=false&email= BCO-DMO bcodmo_dataset_742967
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743018.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743018 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743018.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_743018/ public Microbial enzyme activities: peptidase activities of sediment samples from the RV\\\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 This dataset includes peptidase hydrolysis rates from sediments to measure microbial enzyme activities. Links to archived CTD data are also provided. Five substrates linked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013 leucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates alanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine (AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and glutamic acid-gylcine-arginine (EGR) \\u2013 were used to measure exo- and endo-acting peptidase activities, respectively.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_743018_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_743018/index.htmlTable https://www.bco-dmo.org/dataset/743018 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_743018.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_743018&showErrors=false&email= BCO-DMO bcodmo_dataset_743018
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742235.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742235 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742235.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742235/ public Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\\\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 This dataset includes polysaccharide hydrolysis rates measured in bulk (not filter-fractionated) seawater. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_742235_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742235/index.htmlTable https://www.bco-dmo.org/dataset/742235 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742235.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742235&showErrors=false&email= BCO-DMO bcodmo_dataset_742235
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742919.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742919 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742919.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742919/ public Microbial enzyme activities: polysaccharide hydrolase activities of gravity filtered seawater samples from the RV\\\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 This dataset includes polysaccharide hydrolysis rates measured in samples from gravity filtered seawater. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\nfilter_um (microns)\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_742919_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742919/index.htmlTable https://www.bco-dmo.org/dataset/742919 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742919.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742919&showErrors=false&email= BCO-DMO bcodmo_dataset_742919
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745518/ public Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community.  Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).  Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021.\\r\\n\\r\\nThese data were published in Hu et al. (2018).\n\ncdm_data_type = Other\nVARIABLES:\nSRA_run (unitless)\nSRA_run_link (unitless)\nSRA_study (unitless)\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nsample_name (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745518_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745518/index.htmlTable https://www.bco-dmo.org/dataset/745518 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745518.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745518&showErrors=false&email= BCO-DMO bcodmo_dataset_745518
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_627835.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_627835 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_627835.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_627835/ public Proteins identified from the black smoker chimney Inferno hydrothermal vent plume meta-proteome - replicate Av1 - on the Axial seamount off the coast of Washington in 2011. Proteins identified in the Inferno hydrothermal vent plume meta-proteome\n(replicate Av1).\\u00a0 Only proteins identified by peptides with a protein\nprobability >0.9 are listed.\\u00a0\n \nThese data are reported as Supplementary Table 3 and discussed in [Mattes et\nal., 2013](\\\\http://dmoserv3.bco-\ndmo.org/data_docs/SulfurOxidizers/Mattes_2013_PlumeProt.pdf\\\\).\n(doi:10.1038/ismej.2013.113)\n \nThe FASTA information in the data was expanded to include the metadata when\nthose FASTA headers were linked to GenBank.\\u00a0\n \nProteins that were identified in biological replicate Av2 that were not\nidentified in biological replicate Av1. (GSO: Gamma Sulfur Oxidizer)\n \n  \n \\u00a0\n \n\\u00a0\n \n\\u00a0\n \n\\u00a0\n \n\\u00a0\n \n\\Although fewer proteins were identified in Av2, nearly all (94%) of the\nproteins identified in Av2 were also identified in Av1.\\u00a0 Differences in\nthe total number of proteins identified in replicate samples may result from\ndifferences in the amount of biomass obtained during sample processing.\\\n \nDMO notes:  \n Put multiple FASTA entries on separate lines  \n Split out one number in FASTA header for linking  \n Left it sorted by Total Independent Spectra column  \n Added linkage column  \n Removed commas in 'consensus annotation' column (signals database to put in\nnew column)  \n Reordered columns to put KEGG last -- much longer than any other column\n\ncdm_data_type = Other\nVARIABLES:\nentry (number)\n... (10 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_627835_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_627835/index.htmlTable https://www.bco-dmo.org/dataset/627835 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_627835.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_627835&showErrors=false&email= BCO-DMO bcodmo_dataset_627835
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762511/ public RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. This dataset includes accession numbers for 36 RNAseq libraries housed at The National Center for Biotechnology Information (NCBI).\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ncolony (unitless)\nspecies (uniless)\ndate (unitless)\nyear (unitless)\nmonth (unitless)\nbleaching_status (percent)\nAccession (unitless)\nAccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_762511_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762511/index.htmlTable https://www.bco-dmo.org/dataset/762511 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762511.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762511&showErrors=false&email= BCO-DMO bcodmo_dataset_762511

 
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