Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_681997 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_681997/ | public | Data from: Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It\\u2019s about time: Insights into temporal genetic patterns in oceanic zooplankton from biodiversity indices. | This dataset\\u00a0consists of mitochondrial sequence data and specimen\ninformation for two species of copepods, Haloptilus longicornis and\nPleuromamma xiphias, collected at an open ocean time series site in the North\nPacific Subtropical Gyre (station ALOHA, 22.45N, 158W) during 11 of the\nroutine Hawai'i Ocean Time-series (HOT) research cruises from September of\n2012 to October of 2013 (HOT-246 to HOT-256).\\u00a0Data for Haloptilus\nlongicornis include\\u00a0a 546 base-pair fragment of mitochondrial cytochrome\nc oxidase subunit II for each of 483 individuals (mean of 44 animals per\ncruise). Data for Pleuromamma xiphias include\\u00a0a 551 base-pair fragment of\nmitochondrial cytochrome c oxidase subunit I for each of 510 individuals (mean\nof 46 animals per cruise). Information is also provided on the HOT cruise\nnumber, date, and specific tow from which each individual was collected. Life\nstage and sex of each animal are also noted when identifiable\n \nThese data are associated with the forthcoming publication: \n Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It\\u2019s about\ntime: Insights into temporal genetic patterns in oceanic zooplankton from\nbiodiversity indices.\\u00a0 Limnology and Oceanography \\u00a0\n \nThe unique haplotypes in these data are also available under NCBI accession\nnumbers KY560470 - KY560514 [Haloptilus longicornis], KY560515 -\nKY560565\\u00a0[Pleuromamma xiphias].\n \nThe following files have been included in this dataset (note that the sequence\nIDs in these files differ from the NCBI sequence IDs): \n HOT-HALO.fasta: A fasta-formatted text file containing sequences for a\nportion of the mitochondrial cytochrome c oxidase subunit II gene (COII; 546\nbp) for 483 Haloptilus longicornis individuals collected at Station ALOHA.\n \nHOT-PLXI.fasta: A fasta-formatted text file containing sequences for a portion\nof the mitochondrial cytochrome c oxidase subunit I gene (COI; 551 bp) for 510\nPleuromamma xiphias individuals collected at Station ALOHA.\n \nHALO.csv and PLXI.csv: Converted to csv from an Excel file consisting of one\nworksheet for Haloptilus longicornis and one worksheet for Pleuromamma\nxiphias. In each worksheet, column headings designate: \n sample_id: the sample ID number associated with the original organism\ncollected, DNA extraction, and PCR amplification. \n sequence_id: the sample ID number associated with sequences analysed for the\nproject. \n genus: Genus of the collected organism. \n species: Species of the collected organism. \n cruise: The cruise number for the Hawai'i Ocean Time Series (HOT) cruise on\nwhich the specimen was collected. \n tow: The net tow number on which the specimen was collected. \n collection_date: The date on which the specimen was collected, formatted as\nyyyy-mm-dd. \n stage_sex: The life stage (Copepodite or Adult) of the individual, and the\nsex (Copepodite, Female, Male). \n stage: The life stage (Copepodite or Adult) of the individual. Column added\nby BCO-DMO\\u00a0from the original stage_sex column for ease of use. \n sex: The sex (Copepodite, Female, or Male) of the individual.\\u00a0Column\nadded by BCO-DMO\\u00a0from the original stage_sex column for ease of use. \n mtCO*_sequence: The mtDNA sequence (COII for Haloptilus longicornis; COI for\nPleuromamma xiphias) associated with that individual. This sequence matches\nthe sequence associated with the Sequence ID number in the respective fasta\nfile.\n\ncdm_data_type = Other\nVARIABLES:\nfile_link (unitless)\ndescription (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_681997_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_681997/index.htmlTable | https://www.bco-dmo.org/dataset/681997
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_681997.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_681997&showErrors=false&email= | BCO-DMO | bcodmo_dataset_681997 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_706167 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_706167/ | public | Deep convection simulation from the MITgcm (MIT General Circulation Model) (IVOMLS project) | This dataset includes deep convection simulation output from the MITgcm (MIT\nGeneral Circulation Model). The data include profiles under different\nsituations in an idealized domain. \\u00a0The experiment was based\non\\u00a0winter Labrador Sea\\u00a0conditions.\n \nModel output\\u00a0is\\u00a0available to download as MATLAB .mat files by\nclicking the \\Get Data\\ link. \\u00a0Each file includes the output of one run\ncovering 90 days. \n * Contents of .mat files described in\n\\u00a0[mat_file_variables.csv](\\\\http://dmoserv3.whoi.edu/data_docs/IVOMLS/MITgcm/mat_file_variables.csv\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nexperiment_name (unitless)\nexperiment_type (unitless)\ncomment (unitless)\nfilesize (unitless)\nfile_download_link (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_706167_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_706167/index.htmlTable | https://www.bco-dmo.org/dataset/706167
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_706167.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_706167&showErrors=false&email= | BCO-DMO | bcodmo_dataset_706167 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_780261 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_780261.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_780261/ | public | Scanning Electron Microscopy (SEM) photographs of biofilms on indium tin oxide electrodes from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V A | Scanning Electron Microscopy (SEM) photographs of biofilms on indium tin oxide electrodes from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01.\n\ncdm_data_type = Other\nVARIABLES:\nSampleID (Sample ID, unitless)\nExperimentID (Experiment ID, unitless)\nTreatment (unitless)\nimagename (unitless)\nFLOCSsubstrate (unitless)\nFLOCSdeployDate (FLOCSdeploy Date, unitless)\nFLOCSdepth (meters below seafloor (m))\nFLOCSrecoverDate (FLOCSrecover Date, unitless)\nFluidcollectionCruise (Fluidcollection Cruise, unitless)\nFluidcollectionDate (Fluidcollection Date, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWaterDepth (Water Depth, meters (m))\nimagelink (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_780261_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_780261/index.htmlTable | https://www.bco-dmo.org/dataset/780261
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_780261.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_780261&showErrors=false&email= | BCO-DMO | bcodmo_dataset_780261 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728395 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_728395/ | public | Sediment trap gel images of settled particles that were collected from the Sargasso Sea between 2013 and 2014. | Sinking particle sizes span many orders of magnitude and the relative influence of small particles on carbon export compared to large particles has not been resolved. To determine the influence of particle size on carbon export, the flux of both small (11\\u201364 \\u03bcm) and large (>64 \\u03bcm) particles in the upper mesopelagic was examined during five cruises of the Bermuda Atlantic Time Series (BATS) in the Sargasso Sea using neutrally buoyant sediment traps mounted with tubes containing polyacrylamide gel layers to preserve sizes and shapes of sinking particles. Microphotographic images of gels were collected and used to determine particle size distributions.\n\ncdm_data_type = Other\nVARIABLES:\nYear (unitless)\nMonth (unitless)\nImage_zip_download_link (unitless)\nZip_size (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_728395_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_728395/index.htmlTable | https://www.bco-dmo.org/dataset/728395
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_728395.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_728395&showErrors=false&email= | BCO-DMO | bcodmo_dataset_728395 |