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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_684362 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_684362/ public Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1 from R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 2014 Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1.\n\ncdm_data_type = Other\nVARIABLES:\nSILVA_classification (unitless)\npartial_16S_seq (Partial 16 S Seq, unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_684362_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_684362/index.htmlTable https://www.bco-dmo.org/dataset/684362 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_684362.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_684362&showErrors=false&email= BCO-DMO bcodmo_dataset_684362
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_718117/ public Dilution batch-culture bioassay (remineralization) experiments from SBDOM11 project cruise from R/V Point Sur PS1103 in the Santa Barbara Channel, May 2011 (SBDOM project, SBC LTER project) This dataset includes results from dilution batch-culture bioassay experiments reporting bacterial abundance, growth rates, barcode sequences and DOC were from the SBDOM 11 cruise in May 2011.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nsta_id (unitless)\nbottle (unitless)\nInitiation_date (unitless)\nInitiation_time (unitless)\nTimepoint (unitless)\nDate (unitless)\nDOC_sampling_time (unitless)\nDOC_Bottle_A (micromol/liter)\nDOC_A_st_dev (micromol/liter)\nDOC_Bottle_B (micromol/liter)\nDOC_B_st_dev (micromol/liter)\nBact_abun_sampling_time (unitless)\nBact_abun_A (cells/liter)\nBact_abun_B (cells/liter)\nDNA_sampling_time (unitless)\nPyrosequencing_barcode (unitless)\nmu_growth_A (cells/day)\nmu_growth_B (cells/day)\nBGE_A (unitless)\nBGE_B (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_718117_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_718117/index.htmlTable https://www.bco-dmo.org/dataset/718117 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_718117.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_718117&showErrors=false&email= BCO-DMO bcodmo_dataset_718117
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783880.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783880 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783880.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783880/ public Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014 This dataset indicates organisms, identified to varying levels of taxonomic granularity, present on colonization surfaces deployed at deep-sea vents in the West Pacific.\n\ncdm_data_type = Other\nVARIABLES:\noccurrenceID (Occurrence ID, none)\nkingdom (none)\nphylum (none)\nscientificName (Scientific Name, none)\nscientificNameID (Scientific Name ID, none)\ntaxonRank (Taxon Rank, none)\nidentificationRemarks (Identification Remarks, none)\nidentificationQualifier (Identification Qualifier, none)\noccurrenceStatus (Occurrence Status, none)\nbasisOfRecord (Basis Of Record, none)\neventDate (Event Date, none)\nlongitude (degrees_east)\nlatitude (degrees_north)\ndepth (Maximum Depth In Meters, m)\nminimumDepthInMeters (Minimum Depth In Meters, meters)\nwaterBody (Water Body, none)\nlocality (none)\ncountryCode (Country Code, none)\nidentifiedBy (Identified By, none)\nassociatedMedia (Associated Media, none)\ntotal_sorted (individuals)\nassociatedSequences (Associated Sequences, none)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_783880_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783880/index.htmlTable https://www.bco-dmo.org/dataset/783880 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783880.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783880&showErrors=false&email= BCO-DMO bcodmo_dataset_783880
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700279/ public Metabarcoding zooplankton at station ALOHA: Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU (Plankton Population Genetics project) Metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1-meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa.  All results derive from analyses in mothur v1.36.1 (Schloss et al. 2009, Kozich et al. 2013).\n\ncdm_data_type = Other\nVARIABLES:\nanalysis_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nanalysis_description (unitless)\nOTU_ID (unitless)\nFA3_N1_SF1 (per OTU)\nFA3_N1_SF2 (per OTU)\nFA3_N1_SF3 (per OTU)\nFA3_N2_SF1 (per OTU)\nFA3_N2_SF2 (per OTU)\nFA3_N2_SF3 (per OTU)\nFA3_N3_SF1 (per OTU)\nFA3_N3_SF2 (per OTU)\nFA3_N3_SF3 (per OTU)\nFA3_N4_SF1 (per OTU)\nFA3_N4_SF2 (per OTU)\nFA3_N4_SF3 (per OTU)\n... (68 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_700279_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700279/index.htmlTable https://www.bco-dmo.org/dataset/700279 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700279.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700279&showErrors=false&email= BCO-DMO bcodmo_dataset_700279
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748064 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748064.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_748064/ public Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 This dataset is a raw output operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from extracted DNA and RNA. Columns represent samples, including month sampled, material (either extracted RNA or DNA), and depth (in meters); thus values in each column represent the number of sequences in that sample that belong to a given OTU (OTUs by row). Each row represents a single OTU. The last column lists the taxonomic identifier assigned to each OTU. The raw sequence data can be found in the NCBI SRA database under accession number SRP070577 with the associated BioProject PRJNA311248.\n\ncdm_data_type = Other\nVARIABLES:\nOTU_ID (unitless)\nApril_150m_DNA (unitless)\nJuly_DCM_DNA (unitless)\nApril_890m_DNA (unitless)\nOct_DCM_DNA (unitless)\nOct_150m_DNA (unitless)\nJuly_150m_DNA (unitless)\nApril_150m_cDNA (April 150m C DNA, unitless)\nJuly_150m_cDNA (July 150m C DNA, unitless)\nJan_DCM_DNA (unitless)\nJan_150m_DNA (unitless)\nApril_CAT_DNA (unitless)\nApril_5m_DNA (unitless)\nJuly_POLA_DNA (unitless)\nJuly_CAT_DNA (unitless)\nJuly_5m_DNA (unitless)\nApril_5m_cDNA (April 5m C DNA, unitless)\nJuly_CAT_cDNA (July CAT C DNA, unitless)\nJuly_5m_cDNA (July 5m C DNA, unitless)\nOct_CAT_DNA (unitless)\nApril_CAT_cDNA (April CAT C DNA, unitless)\n... (29 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_748064_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_748064/index.htmlTable https://www.bco-dmo.org/dataset/748064 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_748064.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_748064&showErrors=false&email= BCO-DMO bcodmo_dataset_748064
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658340.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658340 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658340/ public Sample numbers, barcode information, primer information and project name from bacteria samples collected in the Caribbean during 2013 (Contagious coral diseases project) Sample numbers, barcode information, primer information and project name from bacteria samples collected in the Caribbean during 2013 (Contagious coral diseases project)\n\ncdm_data_type = Other\nVARIABLES:\nproject_name (unitless)\nlinker_primer_sequence (unitless)\nsample_id (unitless)\nbarcode_sequence (unitless)\nbarcode_name (unitless)\ndescription (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_658340_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658340/index.htmlTable https://www.bco-dmo.org/dataset/658340 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658340.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658340&showErrors=false&email= BCO-DMO bcodmo_dataset_658340

 
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