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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_781114/ public [16S rRNA gene from RNA] - 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 (An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments) RNA extractions were attempted from sediments at Sites C0014 and C0017 to selectively investigate the active microbial populations at these sites. This study was conducted to supplement the gene-based and metagenomic studies. However, the results from sequenced reverse transcribe 16S rRNA demonstrate the sensitivity of extraction and amplification to external nucleic acids and attest to the challenges in working with low biomass environmental samples. Inconsistencies between primersets and replicates make conclusions about the results of this RNA study extremely tenuous.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_ID (unitless)\nSample_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWater_depth (meters)\nTop_Depth (meters below seafloor)\nBottom_Depth (meters below seafloor)\nSediment_type (unitless)\nEstimated_Temp (degrees Celsius)\nNucleic_Acid_amplified (unitless)\nPrimer_Set_16S_rRNA (Primer Set 16 S R RNA, unitless)\nIllumina_dataset (unitless)\nNotes (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_781114_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_781114_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_781114/index.htmlTable https://www.bco-dmo.org/dataset/781114 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_781114.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_781114&showErrors=false&email= BCO-DMO bcodmo_dataset_781114
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_679447 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_679447.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_679447/ public [AA-CSIA Olson] - Amino acid compound-specific isotope analysis (AA-CSIA) of tissue samples from four distinct trophic groups across the food web in the pelagic eastern tropical Pacific Ocean; samples collected on NOAA cruises from July to December 2006 (CAMEO 2009 - A novel tool for validating trophic position estimates in ecosystem-based fisheries models) Amino acid compound-specific isotope analysis (AA-CSIA) of tissue samples from four distinct trophic groups across the food web in the pelagic eastern tropical Pacific Ocean; samples collected on NOAA cruises from July to December 2006.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nsample_number (unitless)\ndate_analyzed (unitless)\nAlanine_Avg (parts per thousand (per mil, ‰))\nAlanine_SD (parts per thousand (per mil, ‰))\nGlycine_Avg (parts per thousand (per mil, ‰))\nGlycine_SD (parts per thousand (per mil, ‰))\nThreonine_Avg (parts per thousand (per mil, ‰))\nThreonine_SD (parts per thousand (per mil, ‰))\nSerine_Avg (parts per thousand (per mil, ‰))\nSerine_SD (parts per thousand (per mil, ‰))\nValine_Avg (parts per thousand (per mil, ‰))\nValine_SD (parts per thousand (per mil, ‰))\nLeucine_Avg (parts per thousand (per mil, ‰))\nLeucine_SD (parts per thousand (per mil, ‰))\nIsoleucine_Avg (parts per thousand (per mil, ‰))\nIsoleucine_SD (parts per thousand (per mil, ‰))\nProline_Avg (parts per thousand (per mil, ‰))\nProline_SD (parts per thousand (per mil, ‰))\nAsparticAcid_Avg (Aspartic Acid Avg, parts per thousand (per mil, ‰))\nAsparticAcid_SD (Aspartic Acid SD, parts per thousand (per mil, ‰))\nMethionine_Avg (parts per thousand (per mil, ‰))\nMethionine_SD (parts per thousand (per mil, ‰))\nGlutamicAcid_Avg (Glutamic Acid Avg, parts per thousand (per mil, ‰))\nGlutamicAcid_SD (Glutamic Acid SD, parts per thousand (per mil, ‰))\n... (10 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_679447_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_679447/index.htmlTable https://www.bco-dmo.org/dataset/679447 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_679447.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_679447&showErrors=false&email= BCO-DMO bcodmo_dataset_679447
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811458.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811458 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811458.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_811458/ public [Amino Acid Enantiomeric Ratios] - Amino acid enantiomeric ratios (D/L) of high and low molecular weight (HMW, LMW) DOM collected from the North Pacific Subtropical Gyre and Central North Atlantic (The Microbial Nitrogen Pump: Coupling 14C and Compound-specific Amino Acids to Understand the Role of Microbial Transformations in the Refractory Ocean DON Pool) Amino acid enantiomeric ratios (D/L) of high and low molecular weight (HMW,\nLMW) DOM collected from the North Pacific Subtropical Gyre and Central North\nAtlantic. These data were published in Broek et al. (2019) and Broek et al.\n(2017).\n\ncdm_data_type = Other\nVARIABLES:\nlocation (unitless)\nyear (unitless)\nseason (unitless)\nsample_type (unitless)\ndepth (m)\namino_acid (unitless)\nMol_pcnt (unitless (percent))\nMol_pcnt_stdev (unitless (percent))\npcnt_D (unitless (percent))\npcnt_D_stdev (unitless (percent))\nD_L_ratio (unitless)\nD_L_ratio_stdev (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_811458_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_811458/index.htmlTable https://www.bco-dmo.org/dataset/811458 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_811458.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_811458&showErrors=false&email= BCO-DMO bcodmo_dataset_811458
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_815362 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_815362.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_815362/ public [Carbon NEXAFS standards] - Carbon near edge X-ray absorption fine structure (NEXAFS) spectra of standard compounds (Geochemical controls on organic carbon quantity and quality in the deep subsurface) Carbon near edge X-ray absorption fine structure (NEXAFS) spectra of standard compounds.  These data contain incident energy and absorption values at that energy for a standard compounds.\n\ncdm_data_type = Other\nVARIABLES:\neV (E V, electron volts (eV))\nBSA (unitless)\nphenylalanin (unitless)\nleucine (unitless)\nagarose (unitless)\nalginate (unitless)\nlipo (unitless)\nphospholipid (unitless)\nHMWDOM (unitless)\nhumic_acid (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_815362_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_815362/index.htmlTable https://www.bco-dmo.org/dataset/815362 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_815362.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_815362&showErrors=false&email= BCO-DMO bcodmo_dataset_815362
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719379.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719379 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719379.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_719379/ public [Fatty acid profiles] - Fatty acid profiles of M. menidia females and their unfertilized eggs. (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) Gas chromatography was used to quantify the absolute (mg g dry weight-1) and\nrelative concentrations (% of total) of 27 FAs for each of 5 females (whole\nindividual) and their unfertilized eggs (~ 1 ml). Samples were first dried and\nthen homogenized in a solution of chloroform-methanol (2:1 v/v) and\ntricosanoic acid (23:0) as an internal standard for quantification of mg\ng\\u22121\\u00a0dry mass of fatty acids. Lipids were cold-extracted from\napproximately 50 mg of dry mass. A Shimadzu GC-2014 gas chromatograph set with\na Phenomenex ZB-WAX plus capillary column (30\\u00a0m long; 0.53 mm ID; 1.0 um\nthick) was used to quantify FAs, and individual FAs were identified by\ncomparison to commercial standards (Supelco, Inc).\\u00a0\n \nThese data are\\u00a0associated with the corresponding paper:\n \n[Snyder, J.T.*, Murray, C.S.*, and Baumann, H. (2017) Potential for maternal\neffects on offspring CO2-sensitivities in a coastal marine fish. Journal of\nExperimental Marine Biology and Ecology (in\npress).](\\\\https://doi.org/10.1016/j.jembe.2017.11.002\\\\)\n \nOther datasets related to this paper:\n \n[Survival, length, and growth responses of M. menidia offspring from different\nfemales exposed to contrasting CO2 environments.](\\\\https://www.bco-\ndmo.org/dataset/719420\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nCollection_site (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\n... (6 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_719379_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_719379_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_719379/index.htmlTable https://www.bco-dmo.org/dataset/719379 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_719379.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_719379&showErrors=false&email= BCO-DMO bcodmo_dataset_719379
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783581 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783581.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783581/ public [Hawaiian crustose coralline algae dissolved organic matter] - Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae in two water treatments and their effect on the microbial community cell count (Collaborative Research: Dissolved organic matter feedbacks in coral reef resilience: The genomic & geochemical basis for microbial modulation of algal phase shifts) Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae (Hydrolithon reinboldii and Porolithon onkodes) in two water treatments (pre-filtered and unfiltered) and their effect on the microbial community cell count.\n\ncdm_data_type = Other\nVARIABLES:\nWater (unitless)\nInhabitant (unitless)\nReplicate (unitless)\nTimepoint (unitless)\nHours (hours)\nCells (cells per microliter (cells uL-1))\ndelta_Cells (cells per microliter (cells uL-1))\nSurface_Area (square centimeters (cm^2))\nUltra_Violet_Humic_like (Raman units of water (RU))\nMarine_Humic_like (Raman units of water (RU))\nVisible_Humic_like (Raman units of water (RU))\nTryptophan_like (Raman units of water (RU))\nTyrosine_like (Raman units of water (RU))\nPhenylalanine_like (Raman units of water (RU))\nFulvic_Acid_like (Raman units of water (RU))\nDOC (micromoles per liter (umol L-1))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_783581_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783581/index.htmlTable https://www.bco-dmo.org/dataset/783581 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783581.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783581&showErrors=false&email= BCO-DMO bcodmo_dataset_783581
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750972 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750972.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_750972/ public [Micronekton AA CSIA ALOHA: Amino acid specific isotopes in micronekton] - Amino acid compound specific isotope values for micronekton from R/V Kilo Moana KM1109, KM1123, KM1407, KM1418, and other cruises in the Central North Pacific, Station ALOHA, Tropical Pacific, 2007-2014 (Collaborative Research: Isotopic insights to mercury in marine food webs and how it varies with ocean biogeochemistry) This dataset contains amino acid compound specific concentrations in micronekton collected during R/V Kilo Moana cruises around the ALOHA observatory (KM1407, KM1418, KM2011, and a few other undocumented cruises). For more information about the ALOHA observatory see: http://aco-ssds.soest.hawaii.edu/. These data were published in Gloeckler et al (2018), Supporting Information file lno10762-sup-0001-suppinfo1.xlsx\n\ncdm_data_type = Other\nVARIABLES:\nSpeciesID (Species ID, unitless)\nFamilyID (Family ID, unitless)\nSpecimenID (Specimen ID, unitless)\nSample_site (unitless)\nYear (unitless)\nMonth (unitless)\nCruiseID (Cruise ID, unitless)\nn (individuals)\nLength_mm (millimeters)\nLength_Type (length)\nTissue_Type (sample_type)\ndelta15N_ppt_v_AIR (Delta15 N Ppt V AIR, permil)\ndelta13C_ppt_v_VPDB (Delta13 C Ppt V VPDB, permil)\nC_N_mol_mol (unitless)\nAlanine (unitless)\nGlycine (unitless)\nThreonine (unitless)\nSerine (unitless)\nValine (unitless)\nLeucine (unitless)\nIsoleucine (unitless)\nProline (unitless)\nAspartic_acid (unitless)\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_750972_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_750972/index.htmlTable https://www.bco-dmo.org/dataset/750972 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_750972.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_750972&showErrors=false&email= BCO-DMO bcodmo_dataset_750972
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712090.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712090 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712090.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_712090/ public [mol percent - HPLC Method Glu and Phe 15N values] - N isotopic composition of Phenylalanine and Glutamic Acid from a number of organisms, demonstrating new HPLC protocol for precise isotopic measurements (The Use of Nitrogen Isotopes of Amino Acids To Understand Marine Sedimentary 15N Records) N isotopic composition of Phenylalanine and Glutamic Acid from a number of organisms, demonstrating new HPLC protocol for precise isotopic measurements.\n\ncdm_data_type = Other\nVARIABLES:\nsample_type (unitless)\namino_acid (unitless)\nmol_pcnt_hplc (percent (%))\nmol_pcnt_hplc_stdev (percent (%))\nmol_pcnt_GCC (percent (%))\nmol_pcnt_GCC_stdev (percent (%))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_712090_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_712090/index.htmlTable https://www.bco-dmo.org/dataset/712090 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_712090.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_712090&showErrors=false&email= BCO-DMO bcodmo_dataset_712090
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516174 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516174.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_516174/ public [nutrients_major] - Concentration of major dissolved nutrients sampled from CTD hydrocasts from R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) (Costa Rica Dome FLUx and Zinc Experiments) Concentration of major dissolved nutrients (nitrate, nitrite, phosphate and silicate) sampled from CTD hydrocasts on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean.\n\ncdm_data_type = Other\nVARIABLES:\nevent (integer)\ncast (integer)\ncycle (text)\ndate_local (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nnitrate (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))\nnitrite (Mole Concentration Of Nitrite In Sea Water, micromolar (uM))\nN_N (micromolar (uM))\nphosphate (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))\nsilicic_acid (micromolar (uM))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_516174_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_516174_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_516174/index.htmlTable https://www.bco-dmo.org/dataset/516174 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_516174.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_516174&showErrors=false&email= BCO-DMO bcodmo_dataset_516174
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762119 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762119.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762119/ public [Organic Phosphorus NEXFS Standards] - Near Edge X-ray Fluorescence Spectroscopy Data for standard organic phosphorus compounds (P-NEXFS investigation of the influence of aerosol phosphorus on the Mediterranean Sea) Near Edge X-ray Fluorescence Spectroscopy Data for standard organic phosphorus compounds.\n\ncdm_data_type = Other\nVARIABLES:\nEnergy (nd)\nTwo_aminoethylphosphonic_acid (x-ray fluorescence counts)\nAmmonium_OO_diethyldithiophosphate (Mole Concentration Of Ammonium In Sea Water, x-ray fluorescence counts)\nAmmonium_Polyphosphate (Mole Concentration Of Ammonium In Sea Water, x-ray fluorescence counts)\nAdenosine_5prime_triphosphate (Mass Concentration Of Phosphate In Sea Water, x-ray fluorescence counts)\nGlycerol_Phosphate (Mass Concentration Of Phosphate In Sea Water, x-ray fluorescence counts)\nHexametaphosphate (Mass Concentration Of Phosphate In Sea Water, x-ray fluorescence counts)\nPolyphosphate_CL15 (Mass Concentration Of Phosphate In Sea Water, x-ray fluorescence counts)\nSodium_tripolyphosphate (Mass Concentration Of Phosphate In Sea Water, x-ray fluorescence counts)\nO_Phospho_L_Serine (x-ray fluorescence counts)\nO_Phosphorylethanolamine (x-ray fluorescence counts)\nPropylenediphosphonic_Acid (x-ray fluorescence counts)\nPhosphotidylcholine (x-ray fluorescence counts)\nPhytic_Acid (x-ray fluorescence counts)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_762119_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762119/index.htmlTable https://www.bco-dmo.org/dataset/762119 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762119.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762119&showErrors=false&email= BCO-DMO bcodmo_dataset_762119
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_814713 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_814713.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_814713/ public [Sulfonates in plankton cultures] - Intracellular sulfonate metabolites measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics (OCE-PRF Track 1 (Broadening Participation): Cryptic Sulfonate Cycling between Marine Phytoplankton and Heterotrophic Bacterioplankton) Intracellular sulfonate metabolites were measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics. These data have been published in Durham et al. (2019). Raw data are available at Metabolomics Workbench under Project ID PR000797.\n\ncdm_data_type = Other\nVARIABLES:\nOrganism (unitless)\nreplicate (unitless)\ncells_filtered (unitless)\nDHPS (amol per cell)\ncysteic_acid (amol per cell)\nsulfolactate (amol per cell)\nisethionic_acid (amol per cell)\ntaurine (amol per cell)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_814713_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_814713/index.htmlTable https://www.bco-dmo.org/dataset/814713 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_814713.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_814713&showErrors=false&email= BCO-DMO bcodmo_dataset_814713

 
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