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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_472032 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_472032.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_472032/ public 3A: Removal of organic carbon by natural bacterioplankton communities as a function of pCO2 from laboratory experiments between 2012 and 2016 Factors that affect the removal of organic carbon by heterotrophic bacterioplankton can impact the rate and magnitude of organic carbon loss in the ocean through the conversion of a portion of consumed organic carbon to CO2. Through enhanced rates of consumption, surface bacterioplankton communities can also reduce the amount of dissolved organic carbon (DOC) available for export from the surface ocean. The present study investigated the direct effects of elevated pCO2 on bacterioplankton removal of several forms of DOC ranging from glucose to complex phytoplankton exudate and lysate, and naturally occurring DOC. Elevated pCO2 (1000 \\u2013 1500 ppm) enhanced both the rate and magnitude of organic carbon removal by bacterioplankton communities compared to low (pre-industrial and ambient) pCO2 (250 \\u2013 ~400 ppm). The increased removal was largely due to enhanced respiration, rather than enhanced production of bacterioplankton biomass.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nbottle_number (unitless)\ndoc_addition (unitless)\ntarget_pCO2 (Target P CO2, parts per million (ppm))\ntime_point (unitless)\ntime_days (unitless)\ndate (unitless)\nbact_abun_x10e6_avg (cells per milliliter)\nbact_abun_x10e6_stderr (cells per milliliter)\nbact_abun_x10e6_stdev (cells per milliliter)\ntoc_avg (micromoles per liter (uM))\ntoc_stderr (micromoles per liter (uM))\ntoc_stdev (micromoles per liter (uM))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_472032_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_472032/index.htmlTable https://www.bco-dmo.org/dataset/472032 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_472032.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_472032&showErrors=false&email= BCO-DMO bcodmo_dataset_472032
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3872.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3872 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3872.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3872/ public Bacterial production in microcosm experiments from samples collected by R/V E.O. Wilson in the Gulf of Mexico, Alabama (En-Gen DMSP Cycling project) Bacterial production measurements from control and experimental microcosms from the Dauphin Island Cubitainer Experiment (DICE).\n\ncdm_data_type = Other\nVARIABLES:\nexp_id (text)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsite_desc (text)\nmicrocosm (text)\nmicrocosm_type (text)\nexp_day (integer)\nmean (dpm)\nmean_minus_blank (dpm)\nstdev (dpm)\ncoeff_var (%)\ninc_time (hours)\nleu_inc_per_h (nM Leu per hour)\nleu_inc_per_d (nM Leu per day)\nstdev_calc (nM Leu per day)\nbact_prod (nM Carbon per day)\nbact_prod_err (nM Carbon  per day)\nbact_C_demand (nM Carbon per day)\nbact_C_demand_err (nM Carbon per day)\nbact_S_prod (nM Sulfur per day)\nreplicate (unitless)\ndpm (dpm)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3872_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3872/index.htmlTable https://www.bco-dmo.org/dataset/3872 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3872.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3872&showErrors=false&email= BCO-DMO bcodmo_dataset_3872
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3951 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3951.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3951/ public Biogeochemical and biological data from Niskin bottle samples from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station from 2011-2012 (Trophic BATS project) Biogeochemical and biological data from Niskin bottle samples from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station from 2011-2012.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (text)\nstation (integer or text)\ncast (integer)\ndate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\njulian_day (decimal day)\ntime_local (HHMM)\ndepth (m)\ndepth_nom (Depth, meters)\nniskin_flag (dimensionless)\ntemp (Temperature, degrees Celsius)\nsal (parts per thousand (ppt))\ndensity (kg per cubic meter)\nchl_a (Concentration Of Chlorophyll In Sea Water, micrograms per liter)\nO2 (micromoles per kilogram)\nbeam (reciprocal meters)\nchla_tot_whole (Concentration Of Chlorophyll In Sea Water, micrograms per liter)\nchla_tot_gt5um (Concentration Of Chlorophyll In Sea Water, micrograms per liter)\nbact_prod (pmol Thy per liter per hour)\nbact_prod_C (milligrams C per cubic meter per day)\nbact_abund (cells per milliliter)\nbact_POC (micrograms per liter)\nprochlorococcus (cells per milliliter)\nsynechococcus (cells per milliliter)\n... (21 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3951_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3951/index.htmlTable https://www.bco-dmo.org/dataset/3951 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3951.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3951&showErrors=false&email= BCO-DMO bcodmo_dataset_3951
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543314.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543314 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543314.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_543314/ public Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013 (Ocean Microbial Observatory project) Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013. This dataset includes water samples collected from 2009-2013 at the Bermuda Hydrostation that were analyzed for DOC, POC, bacterial abundance, leucine, and thymidine incorporation.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\ncruise_id2 (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nstation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncast_type (unitless)\ncast (unitless)\nsample (unitless)\ndepth_n (Depth, meters)\ndepth (m)\nDOC (micromoles per liter)\nDOC_stdev (umol/L)\nPOC (Particulate Organic Carbon, umol/L)\nbact_abund (10^8 cells/liter)\nbact_abund_stdev (10^8 cells/liter)\nleuc_incorp (picomoles per liter per hour)\nleu_sd (picomoles per liter per hour)\nthy_incorp (picomoles per liter per hour)\nthy_sd (picomoles per liter per hour)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_543314_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_543314/index.htmlTable https://www.bco-dmo.org/dataset/543314 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_543314.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_543314&showErrors=false&email= BCO-DMO bcodmo_dataset_543314
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_718117/ public Dilution batch-culture bioassay (remineralization) experiments from SBDOM11 project cruise from R/V Point Sur PS1103 in the Santa Barbara Channel, May 2011 (SBDOM project, SBC LTER project) This dataset includes results from dilution batch-culture bioassay experiments reporting bacterial abundance, growth rates, barcode sequences and DOC were from the SBDOM 11 cruise in May 2011.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nsta_id (unitless)\nbottle (unitless)\nInitiation_date (unitless)\nInitiation_time (unitless)\nTimepoint (unitless)\nDate (unitless)\nDOC_sampling_time (unitless)\nDOC_Bottle_A (micromol/liter)\nDOC_A_st_dev (micromol/liter)\nDOC_Bottle_B (micromol/liter)\nDOC_B_st_dev (micromol/liter)\nBact_abun_sampling_time (unitless)\nBact_abun_A (cells/liter)\nBact_abun_B (cells/liter)\nDNA_sampling_time (unitless)\nPyrosequencing_barcode (unitless)\nmu_growth_A (cells/day)\nmu_growth_B (cells/day)\nBGE_A (unitless)\nBGE_B (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_718117_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_718117/index.htmlTable https://www.bco-dmo.org/dataset/718117 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_718117.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_718117&showErrors=false&email= BCO-DMO bcodmo_dataset_718117
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773802 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773802.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_773802/ public Dissolved organic matter (DOM) and base-extracted particulate organic matter (BEPOM) collected from a plankton senescence experiment from water samples offshore of North Carolina A mixed assemblage of natural phytoplankton community collected from waters offshore of North Carolina were used to create planktonic dissolved organic matter (DOM) and particulate organic matter (POM). The latter was extracted with 0.1 M NaOH to create base-extracted POM (BEPOM). Methods are reported in Kinsey et al. (2018) and Osburn et al. (2019). The medium used was: Natural Assemblage 2x filtered North Atlantic Surface water with f/2 nutrients; Whole water experiment - unfiltered North Atlantic Surface water with f/20 nutrients Irradiance ~70-100 umol photon m-2 s-1 (cool white bulbs); on roller table; diel cycle, 19 \\u00b0C\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nsample_date (unitless)\ndays (unitless)\ngrowth (unitless)\nlabel_time_rep (unitless)\nbottle_nr (unitless)\nraw_invivo_flu (arbitrary)\nbact_abund (cells per mL)\ndoc (micromoles per Liter (umol/L))\ndom_b (quinine sulfate units)\ndom_t (quinine sulfate units)\ndom_a (quinine sulfate units)\ndom_c (quinine sulfate units)\ndom_m (quinine sulfate units)\ndom_n (quinine sulfate units)\ndom_bix (unitless)\ndom_hix (unitless)\ndom_a254 (inverse meters)\ndom_a300 (inverse meters)\ndom_a320 (inverse meters)\ndom_slope (inverse micrometer)\n... (19 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_773802_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_773802/index.htmlTable https://www.bco-dmo.org/dataset/773802 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_773802.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_773802&showErrors=false&email= BCO-DMO bcodmo_dataset_773802
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_517839/ public Experimental and survey biogeochemical and microbial data from R/V Point Sur cruises PS1009 and PS1103 in the Santa Barbara Channel from 2010-2011 (SBDOM project, SBC LTER project) The dataset includes experimental and survey biogeochemical and microbial data. Samples were collected during research cruises in April 2010 and May 2011 in the Santa Barbara Channel.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (text)\ncruise_id (text)\nactivity (text)\nevent (unitless)\nsta_id (alphanumeric)\ncast_type (text)\ncast (alphanumeric)\ndepth_bottom (Depth, meters (m))\ndate_local (unitless)\ntime_local (unitless)\ndecimal_year_local (decimal year)\ndate_gmt (unitless)\ntime_gmt (unitless)\ndecimal_year_gmt (decimal year)\nlatitude (degrees_north)\nlongitude (degrees_east)\nISO_DateTime_Local (ISO Date Time Local, unitless)\ndepth (m)\ndepth_target (Depth, meters (m))\nbottle (integer or text)\nsample (integer)\ncollection_bot_ID (integer)\nphosphate (Mass Concentration Of Phosphate In Sea Water, micromoles per Liter (umol/L))\nsilicate (Mass Concentration Of Silicate In Sea Water, micromolar (uM))\nNO2 (Mole Concentration Of Nitrite In Sea Water, micromoles per Liter (umol/L))\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromoles per Liter (umol/L))\n... (46 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_517839_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_517839/index.htmlTable https://www.bco-dmo.org/dataset/517839 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_517839.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_517839&showErrors=false&email= BCO-DMO bcodmo_dataset_517839
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_511526 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_511526.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_511526/ public Experimental results: Exopolymer and carbohydrate production by diatoms with growth; conducted at the Thornton lab, TAMU from 2007-2012 (Diatom EPS Production project) Data from laboratory experiment on exopolymer and carbohydrate production by\nthe diatoms Thalassiosira weissflogii (CCMP 1051), Skeletonema marinoi (CCMP\n1332), and Cylindrotheca closterium (CCMP 339) during the growth to death\nphases of the cultures.\n \nRelated references:  \n Chen, J. 2014. Factors affecting carbohydrate production and the formation\nof transparent exopolymer particles (TEP) by diatoms. Ph.D. dissertation,\nTexas A&M University, College Station, TX.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (dimensionless)\ngrowth_phase (dimensionless)\nday (dimensionless)\nculture (dimensionless)\ncell_abundance (cells per milliliter (mL-1))\ncell_vol_mean (cubic micrometers (um^3))\nchla (Concentration Of Chlorophyll In Sea Water, micrograms per liter (ug L-1))\nchla_per_cell (Concentration Of Chlorophyll In Sea Water, picograms per cell (pg cell-1))\nchla_per_cell_vol (Concentration Of Chlorophyll In Sea Water, femtograms per cubic micrometer (fg um-3))\ntot_carb (micrograms per milliliter (ug mL-1))\ntot_carb_per_cell (picograms per cell (pg cell-1))\ntot_carb_per_cell_vol (femtograms per cubic micrometer (fg um-3))\ncolloidal_carb (micrograms per milliliter (ug mL-1))\ncollodial_per_cell (picograms per cell (pg cell-1))\ncolloidal_per_cell_vol (femtograms per cubic micrometer (fg um-3))\nEPS_carb (micrograms per milliliter (ug mL-1))\nEPS_carb_per_cell (picograms per cell (pg cell-1))\nEPS_carb_per_cell_vol (femtograms per cubic micrometer (fg um-3))\nHW_carb (micrograms per milliliter (ug mL-1))\n... (21 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_511526_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_511526/index.htmlTable https://www.bco-dmo.org/dataset/511526 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_511526.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_511526&showErrors=false&email= BCO-DMO bcodmo_dataset_511526
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_518508 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_518508.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_518508/ public Experimental results: Remineralization experiments to assess the ability of natural assemblages of bacteria to utilize DOM produced under Si and N limitation (SBDOM project, SBC LTER project) Culture studies of diatoms that dominate spring blooms in the Santa Barbara Channel were used to examine the effects of N and Si stress on the magnitude of production and the chemical composition of DOM (see the BIB Experiments dataset). The ability of natural assemblages of bacteria to utilize DOM produced under Si and N limitation was then assessed using remineralization experiments. Species examined in the remineralization experiments include: Skeletonema marinoi, Chaetoceros socialis, Thalassiosira weissflogii, and Odontella aurita.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (text)\ntreatment (text)\nreplicate (integer)\ntime_point (integer)\ndays_elapsed (number)\nDOC (micromoles per Liter (umol/L))\nDOC_sd (micromoles per Liter (umol/L))\nTDN (micromoles per Liter (umol/L))\nTDN_sd (micromoles per Liter (umol/L))\nNO3_NO2 (micromoles per Liter (umol/L))\nNH4 (micromoles per Liter (umol/L))\nPO4 (Mass Concentration Of Phosphate In Sea Water, micromoles per Liter (umol/L))\ndSi (D Si, micromoles per Liter (umol/L))\nbact_abund_FCM (cells per Liter (cells/L))\nbact_abund_DAPI (cells per Liter (cells/L))\nbact_abund_DAPI_sd (cells per Liter (cells/L))\nbact_prod (picomoles Leucine per Liter per hour (pmol Leu/L/hr))\nbact_prod_sd (picomoles Leucine per Liter per hour (pmol Leu/L/hr))\nspecifc_growth_rate (per day)\nbact_growth_eff (unitless)\nDNA_sampled (yes or no)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_518508_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_518508/index.htmlTable https://www.bco-dmo.org/dataset/518508 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_518508.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_518508&showErrors=false&email= BCO-DMO bcodmo_dataset_518508
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516204 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516204.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_516204/ public Heterotrophic (non-pigmented) bacteria abundances determined by flow cytometry (post-cruise/on-shore analysis) from samples collected on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) Non-pigmented bacteria abundances from preserved (0.5% paraformaldehyde) frozen samples run on a Beckman-Coulter Altra flow cytometer after staining with Hoechst 33342 DNA stain and excitation with 200 mW UV and 1W 488 nm laser light. Bacteria discriminated based on DNA content (450\\u00b140 nm), as well as forward and 90\\u00b0 side light scatter parameters. Samples were collected on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean.\n\ncdm_data_type = Other\nVARIABLES:\nevent (integer)\ncast (integer)\ncycle (text)\ndate_local (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nniskin (integer)\nbact_het_cyt (cells per milliliter (cells/mL))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_516204_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_516204/index.htmlTable https://www.bco-dmo.org/dataset/516204 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_516204.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_516204&showErrors=false&email= BCO-DMO bcodmo_dataset_516204
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2348 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2348.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2348/ public Ice core bacteria data from RVIB Nathaniel B. Palmerand ARSV Laurence M. Gould cruises NBP0104, LMG0106, NBP0204,and LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project; Sea Ice Microbes project) Ice core bacteria data from RVIB Nathaniel B. Palmerand ARSV Laurence M. Gould cruises NBP0104, LMG0106, NBP0204,and LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project; Sea Ice Microbes project)\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid\nyear\nstation\nevent\nlatitude (degrees_north)\nlongitude (degrees_east)\nmonth_gmt (GMT)\nday_gmt (GMT)\nyrday_gmt (GMT)\ncore_no\nsect_top_depth (decimal meters)\nsect_bot_depth (decimal meters)\nbact_abun (cells/meter3)\nbact_biomass_C (milligrams C/meter3)\nchl_a_ugm (Concentration Of Chlorophyll In Sea Water, micrograms/liter)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2348_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2348/index.htmlTable https://www.bco-dmo.org/dataset/2348 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2348.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2348&showErrors=false&email= BCO-DMO bcodmo_dataset_2348
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757485 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757485.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_757485/ public Iron concentrations of phage from experiments of iron-labelled E. coli infected with T4 and T5 bacteriophage, 2018 and 2019. This data was collected as part of a study investigating the source of iron to bacteriophage (phage for short, or viruses that infect and kill bacteria) progeny. Evidence from a phage that infects E. coli shows iron incorporated into the tail fiber structure. This study aims at identifying whether the source of the iron is environmental or bacterially derived. E. coli bacterial cultures were grown in minimal media spiked with 10 \\u00b5M 57FeSO4 then infected with phage T4 or T5. The phages were purified by methods of centrifugation, filtration, density-dependent ultracentrifugation, and dialyzing. The resulting phage fractions were quantified by SYBR epifluorescence microscopy and metal concentrations were measured on an ELEMENT XR ICP-MS.\n\ncdm_data_type = Other\nVARIABLES:\ndate_utc (unitless)\nexpt_round (unitless)\nsample (unitless)\ndescription (unitless)\nFe_56_nM (Fe 56 N M, nanoMolar)\nFe_57_nM (Fe 57 N M, nanoMolar)\nvolume (liters)\nFe_56_nmol (nanomoles)\nFe_57_nmol (nanomoles)\nCu_63_nmol (nanomoles)\nZn_66_nmol (nanomoles)\nNi_60_nmol (nanomoles)\nPb_208_nmol (nanomoles)\nbact_cells_ml (cells/milliliter)\nphage_VPL_ml (virus-like particles/milliliter)\nFe_57_atoms_per_phage (atoms)\nnotes_expt (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_757485_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_757485/index.htmlTable https://www.bco-dmo.org/dataset/757485 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_757485.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_757485&showErrors=false&email= BCO-DMO bcodmo_dataset_757485
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782.graph public Niskin bottle samples Niskin bottle samples. CTD measurements at water sample depths and Niskin bottle water samples from the Bermuda Atlantic Time-series Study (BATS) and from Station S, located 25 km SE of Bermuda (32°10N, 64°30W) Measurements have been collected since 1988 and include nutrients, biogeochemical concentration, bacterial enumeration, and cyanobacteria..\n\ncdm_data_type = Point\nVARIABLES:\ncruise_type (unitless)\ncruise_type_text (unitless)\ncruise_number (unitless)\ncast_number (unitless)\ndecy (year)\ntime (ISO Datetime, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nfilename (unitless)\nId (unitless)\ndepth (m)\nniskin_number (unitless)\np1 (nanograms per kilogram)\np2 (nanograms per kilogram)\np3 (nanograms per kilogram)\np4 (nanograms per kilogram)\np5 (nanograms per kilogram)\np6 (nanograms per kilogram)\np7 (nanograms per kilogram)\np8 (nanograms per kilogram)\np9 (nanograms per kilogram)\np10 (nanograms per kilogram)\np11 (nanograms per kilogram)\np12 (nanograms per kilogram)\n... (41 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3782_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3782/index.htmlTable https://www.bco-dmo.org/dataset/3782 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3782.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3782&showErrors=false&email= BCO-DMO bcodmo_dataset_3782
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3773.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3773 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3773.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3773/ public Niskin bottle water samples and CTD measurements from the Hawaii Ocean Time-Series cruises from 1988-2016 (HOT project) Monthly measurements of the thermohaline structure, water column chemistry, and primary production were collected at station ALOHA as part of the HOT program.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (unitless)\nEXPOCODE (unitless)\nShip (unitless)\nSTNNBR (unitless)\nCASTNO (unitless)\nsection (unitless)\ntime (ISO Date Time, seconds since 1970-01-01T00:00:00Z)\nDate (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\ntimeutc (unitless)\ntimecode (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nnav_code (unitless)\ndepth_max (Depth, meters (m))\npres_max (decibars (db))\ndepth_hgt (Depth, meters (m))\nparameters (unitless)\ncomments (unitless)\nHOT_summary_file_name (unitless)\nROSETTE (unitless)\nCTDPRS (decibars)\nA_CAR (nanograms per liter (ng/L))\nALKALIN (microeq/kilogram (ueq/kg))\n... (78 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3773_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3773/index.htmlTable https://www.bco-dmo.org/dataset/3773 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3773.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3773&showErrors=false&email= BCO-DMO bcodmo_dataset_3773
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753624.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753624 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753624.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753624/ public Nutrient concentrations and microbial counts from Niskin bottle collections on R/V Atlantic Explorer A1620 in the Bermuda Atlantic Time-series Study site from Sept 2016 Nutrient concentrations and microbial counts from Niskin bottle collections on R/V Atlantic Explorer A1620 in the Bermuda Atlantic Time-series Study site from Sept 2016.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nCruise (unitless)\nCast (unitless)\nNiskin (unitless)\ndate (unitless)\ndate_decyr (unitless)\ntime_UTC (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nTemp (Temperature, degrees celsius)\nCTD_S (pratical salinity units (PSU))\nPressure (decibars)\nSigma_theta (Sea Water Sigma Theta, kilogram/meter^3)\nConductivity (Sea Water Electrical Conductivity, Siemens per meter)\nFluor (milligram per Liter)\nPar (Downwelling Photosynthetic Photon Radiance In Sea Water, micro-Einsteins/meter^2/second (uE/m^2/sec))\nO2 (millimole per kilogram)\nbeam_trans_CStarTr0 (Beam Trans CStar Tr0, unitless)\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, millimole per Liter)\nNO3_NO2_QF (Mole Concentration Of Nitrate In Sea Water, unitless)\nPO4 (Mass Concentration Of Phosphate In Sea Water, millimole per Liter)\nPO4_QF (Mass Concentration Of Phosphate In Sea Water, unitless)\nPOC_mg_L (milligram per Liter)\nPOC_mmol_L (millimole per Liter)\nPOC_QF (unitless)\n... (11 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_753624_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753624/index.htmlTable https://www.bco-dmo.org/dataset/753624 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753624.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753624&showErrors=false&email= BCO-DMO bcodmo_dataset_753624
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753679.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753679 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753679.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753679/ public Nutrient concentrations and microbial counts from Niskin bottle collections on R/V Atlantic Explorer A1703 in the Bermuda Atlantic Time-series Study site from Mar/April 2016 Nutrient concentrations and microbial counts from Niskin bottle collections on R/V Atlantic Explorer A1703 in the Bermuda Atlantic Time-series Study site from Mar/April 2016.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nCruise (unitless)\nCast (unitless)\nNiskin (unitless)\ndate (unitless)\ndate_decyr (unitless)\ntime_UTC (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nTemp (Temperature, degrees celsius)\nCTD_S (pratical salinity units (PSU))\nPressure (decibars)\nSigma_theta (Sea Water Sigma Theta, kilogram/meter^3)\nConductivity (Sea Water Electrical Conductivity, Siemens per meter)\nFluor (milligram per Liter)\nPar (Downwelling Photosynthetic Photon Radiance In Sea Water, micro-Einsteins/meter^2/second (uE/m^2/sec))\nO2 (millimole per kilogram)\nbeam_trans_CStarTr0 (Beam Trans CStar Tr0, unitless)\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, millimole per Liter)\nNO3_NO2_QF (Mole Concentration Of Nitrate In Sea Water, unitless)\nPO4 (Mass Concentration Of Phosphate In Sea Water, millimole per Liter)\nPO4_QF (Mass Concentration Of Phosphate In Sea Water, unitless)\nNH4 (Mole Concentration Of Ammonium In Sea Water, millimole per liter)\nNH4_QF (Mole Concentration Of Ammonium In Sea Water, unitless)\nPOC_mg_L (milligram per Liter)\n... (13 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_753679_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753679/index.htmlTable https://www.bco-dmo.org/dataset/753679 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753679.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753679&showErrors=false&email= BCO-DMO bcodmo_dataset_753679
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_506135.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_506135 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_506135.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_506135/ public Results from growth rate experiment with the diatom Thalassiosira wessiflogii in semi-continuous culture; conducted at the Thornton lab, TAMU from 2007-2012 (Diatom EPS Production project) Data from laboratory experiment on growth rate and transparent exopolymer particles (TEP) in the diatom Thalassiosira wessiflogii (CCMP 1051) in a semi-continuous culture (four replicate cultures).\n\ncdm_data_type = Other\nVARIABLES:\nday (dimensionless)\ndilution_rate (per day (day-1))\nculture (dimensionless)\ncell_abundance (cells per milliliter)\ncell_vol_mean (cubic micrometers (um^3))\ncell_vol_sd (cubic micrometers (um^3))\ncell_vol_n (dimensionless)\nchla (Concentration Of Chlorophyll In Sea Water, micrograms per liter (ug L-1))\nchla_per_cell (Concentration Of Chlorophyll In Sea Water, picograms per cell (pg cell-1))\nchla_per_cell_vol (Concentration Of Chlorophyll In Sea Water, femtograms per cubic micrometer (fg um-3))\ntot_carb (micrograms per milliliter (ug mL-1))\ntot_carb_per_cell (picograms per cell (pg cell-1))\ntot_carb_per_cell_vol (femtograms per cubic micrometer (fg um-3))\nTEP (TEP per milliliter (TEP mL-1))\nTEP_mean_size (square micrometers (um^2))\nTEP_sd (square micrometers (um^2))\nTEP_n (dimensionless)\ntot_TEP_area (square millimeters per milliliter (mm^2 mL-1))\nTEP_prod_rate (square millimeters per milliliter per day  (mm^2 mL-1 day-1))\nvol_conc (microliters per liter (uL L-1))\nvol_conc_sd (microliters per liter (uL L-1))\nvol_conc_n (dimensionless)\nagg_vol_conc (microliters per liter (uL L-1))\nagg_vol_conc_sd (microliters per liter (uL L-1))\nagg_vol_conc_n (dimensionless)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_506135_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_506135/index.htmlTable https://www.bco-dmo.org/dataset/506135 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_506135.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_506135&showErrors=false&email= BCO-DMO bcodmo_dataset_506135
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3093 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3093.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3093/ public Time-series Niskin-bottle sample data from R/V Hermano Gines cruises in the Cariaco Basin from 1995 through 2017 (CARIACO Ocean Time-Series Program) The CARIACO Ocean Time-Series Program (formerly known as CArbon Retention In A Colored Ocean) started on November 1995 (CAR-001) and ended on January 2017 (CAR-232). Monthly cruises were conducted to the CARIACO station (10.50\\u00b0 N, 64.67\\u00b0 W) onboard the R/V Hermano Gin\\u00e9s of the Fundaci\\u00f3n La Salle de Ciencias Naturales de Venezuela. During each cruise, a minimum of four hydrocasts were performed to collect a suite of core monthly observations. We conducted separate shallow and deep casts to obtain a better vertical resolution of in-situ Niskin-bottles samples for chemical observations, and for productivity, phytoplankton, and pigment observations.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_number (integer (nnn))\nCruise_ID_1 (alphanumeric)\nCruise_ID_2 (alphanumeric)\nLeg (integer (n))\nDay (unitless)\nMonth (unitless)\nYear (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nHydro_cast_no (integer (n))\nDepth_target (Depth, meters (m))\ndepth (m)\nO2_ml_L (milliliters/liter (ml/L))\nq_O2_ml_L (dimensionless)\nO2_umol_kg (micromoles/kilogram (μmol/kg))\nq_O2_umol_kg (dimensionless)\nNO3_UDO (Mole Concentration Of Nitrate In Sea Water, micromolar (μM))\nq_NO3_UDO (dimensionless)\nPO4_UDO (Mass Concentration Of Phosphate In Sea Water, micromolar (μM))\nq_PO4_UDO (dimensionless)\nSiO4_UDO (Si O4 UDO, micromolar (μM))\n... (75 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3093_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3093/index.htmlTable https://www.bco-dmo.org/dataset/3093 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3093.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3093&showErrors=false&email= BCO-DMO bcodmo_dataset_3093
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543828 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543828.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_543828/ public Virioplankton abundance using FISH probe at BATS site in the western Sargasso Sea from 2000-2011 (Ocean Microbial Observatory project) Virioplankton abundances were measured from samples collected from January 2000 to December 2011 as part of the larger BATS program aboard the R/V Weatherbird II or the R/V Atlantic Explorer. Supporting data provided by the BATS time-series program and are available at (http://bats.bios.edu/). This dataset reports abundances quantified using FISH (Fluorescence in situ hybridization).\n\ncdm_data_type = Other\nVARIABLES:\nstation (unitless)\ncruise_ID (unitless)\ndate_in (unitless)\ndecyear (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\ndepth_nom (Depth, meters)\ndepth_mixed (Depth, meters)\nabund_Probe_Bact (10^8 cells/liter)\nabund_Probe_Bact_sd (10^8 cells/liter)\nabund_Eubac (10^8 cells/liter)\nabund_Cyano (10^7 cells/liter)\nabund_SAR11 (10^8 cells/liter)\nabund_Cyt (10^7 cells/liter)\nabund_Rose (10^7 cells/liter)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_543828_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_543828/index.htmlTable https://www.bco-dmo.org/dataset/543828 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_543828.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_543828&showErrors=false&email= BCO-DMO bcodmo_dataset_543828
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2350.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2350 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2350.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2350/ public Water column bacteria data from ARSV Laurence M. Gould cruises LMG0104 and LMG0106 in the Southern Ocean in 2001 (SOGLOBEC project; Sea Ice Microbes project) Water column bacteria data from ARSV Laurence M. Gould cruises LMG0104 and LMG0106 in the Southern Ocean in 2001 (SOGLOBEC project; Sea Ice Microbes project)\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid\nyear\nevent\nstation\nmonth_gmt (GMT)\nday_gmt (GMT)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nbact_abun (cells/meter3)\nbact_biomass_C (milligrams C/meter3)\nchl_a_ugm (Concentration Of Chlorophyll In Sea Water, micrograms/liter)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2350_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2350/index.htmlTable https://www.bco-dmo.org/dataset/2350 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2350.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2350&showErrors=false&email= BCO-DMO bcodmo_dataset_2350

 
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