Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700961/ | public | NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) | These data include sample information and accession links to sequence data at\nThe National Center for Biotechnology Information (NCBI) Sequence Read Archive\n(SRA).\n \nThis data submission consists of metabarcoding data for the zooplankton\ncommunity in the epipelagic, mesopelagic and upper bathypelagic zones\n(0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to\nassess the hidden diversity present in zooplankton assemblages in midwaters,\nand detect vertical gradients in species richness, depth distributions, and\ncommunity composition of the full zooplankton assemblage. Samples were\ncollected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square\nMultiple Opening and Closing Nets and Environmental Sampling System (MOCNESS,\n200um mesh), on R/V Falkor cruise FK140613. \\u00a0Next generation sequence\ndata (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton\nassemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers\ndescribed in Fonseca et al. 2010). The data includes sequences and read count\nabundance information for molecular OTUs from both holoplanktonic and\nmeroplanktonic taxa\n \nRelated dataset containing OTU tables and fasta sequences (representative /\nmost abundance read for each OTU): \n[Metabarcoding zooplankton at ](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[station](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[ ALOHA: OTU tables and ](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[fasta](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[ files](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nanalysis_name (unitless)\n... (15 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_700961_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700961/index.htmlTable | https://www.bco-dmo.org/dataset/700961
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700961.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700961&showErrors=false&email= | BCO-DMO | bcodmo_dataset_700961 |