Accessing BCO-DMO data
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_681997 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_681997/ | public | Data from: Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It\\u2019s about time: Insights into temporal genetic patterns in oceanic zooplankton from biodiversity indices. | This dataset\\u00a0consists of mitochondrial sequence data and specimen\ninformation for two species of copepods, Haloptilus longicornis and\nPleuromamma xiphias, collected at an open ocean time series site in the North\nPacific Subtropical Gyre (station ALOHA, 22.45N, 158W) during 11 of the\nroutine Hawai'i Ocean Time-series (HOT) research cruises from September of\n2012 to October of 2013 (HOT-246 to HOT-256).\\u00a0Data for Haloptilus\nlongicornis include\\u00a0a 546 base-pair fragment of mitochondrial cytochrome\nc oxidase subunit II for each of 483 individuals (mean of 44 animals per\ncruise). Data for Pleuromamma xiphias include\\u00a0a 551 base-pair fragment of\nmitochondrial cytochrome c oxidase subunit I for each of 510 individuals (mean\nof 46 animals per cruise). Information is also provided on the HOT cruise\nnumber, date, and specific tow from which each individual was collected. Life\nstage and sex of each animal are also noted when identifiable\n \nThese data are associated with the forthcoming publication: \n Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It\\u2019s about\ntime: Insights into temporal genetic patterns in oceanic zooplankton from\nbiodiversity indices.\\u00a0 Limnology and Oceanography \\u00a0\n \nThe unique haplotypes in these data are also available under NCBI accession\nnumbers KY560470 - KY560514 [Haloptilus longicornis], KY560515 -\nKY560565\\u00a0[Pleuromamma xiphias].\n \nThe following files have been included in this dataset (note that the sequence\nIDs in these files differ from the NCBI sequence IDs): \n HOT-HALO.fasta: A fasta-formatted text file containing sequences for a\nportion of the mitochondrial cytochrome c oxidase subunit II gene (COII; 546\nbp) for 483 Haloptilus longicornis individuals collected at Station ALOHA.\n \nHOT-PLXI.fasta: A fasta-formatted text file containing sequences for a portion\nof the mitochondrial cytochrome c oxidase subunit I gene (COI; 551 bp) for 510\nPleuromamma xiphias individuals collected at Station ALOHA.\n \nHALO.csv and PLXI.csv: Converted to csv from an Excel file consisting of one\nworksheet for Haloptilus longicornis and one worksheet for Pleuromamma\nxiphias. In each worksheet, column headings designate: \n sample_id: the sample ID number associated with the original organism\ncollected, DNA extraction, and PCR amplification. \n sequence_id: the sample ID number associated with sequences analysed for the\nproject. \n genus: Genus of the collected organism. \n species: Species of the collected organism. \n cruise: The cruise number for the Hawai'i Ocean Time Series (HOT) cruise on\nwhich the specimen was collected. \n tow: The net tow number on which the specimen was collected. \n collection_date: The date on which the specimen was collected, formatted as\nyyyy-mm-dd. \n stage_sex: The life stage (Copepodite or Adult) of the individual, and the\nsex (Copepodite, Female, Male). \n stage: The life stage (Copepodite or Adult) of the individual. Column added\nby BCO-DMO\\u00a0from the original stage_sex column for ease of use. \n sex: The sex (Copepodite, Female, or Male) of the individual.\\u00a0Column\nadded by BCO-DMO\\u00a0from the original stage_sex column for ease of use. \n mtCO*_sequence: The mtDNA sequence (COII for Haloptilus longicornis; COI for\nPleuromamma xiphias) associated with that individual. This sequence matches\nthe sequence associated with the Sequence ID number in the respective fasta\nfile.\n\ncdm_data_type = Other\nVARIABLES:\nfile_link (unitless)\ndescription (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_681997_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_681997/index.htmlTable | https://www.bco-dmo.org/dataset/681997
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_681997.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_681997&showErrors=false&email= | BCO-DMO | bcodmo_dataset_681997 |