Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_781114/ | public | 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | RNA extractions were attempted from sediments at Sites C0014 and C0017 to selectively investigate the active microbial populations at these sites. This study was conducted to supplement the gene-based and metagenomic studies. However, the results from sequenced reverse transcribe 16S rRNA demonstrate the sensitivity of extraction and amplification to external nucleic acids and attest to the challenges in working with low biomass environmental samples. Inconsistencies between primersets and replicates make conclusions about the results of this RNA study extremely tenuous.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_ID (unitless)\nSample_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWater_depth (meters)\nTop_Depth (meters below seafloor)\nBottom_Depth (meters below seafloor)\nSediment_type (unitless)\nEstimated_Temp (degrees Celsius)\nNucleic_Acid_amplified (unitless)\nPrimer_Set_16S_rRNA (Primer Set 16 S R RNA, unitless)\nIllumina_dataset (unitless)\nNotes (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_781114_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_781114/index.htmlTable | https://www.bco-dmo.org/dataset/781114
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_781114.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_781114&showErrors=false&email= | BCO-DMO | bcodmo_dataset_781114 | ||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734674 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734674.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_734674/ | public | OTU molecular abundances for coral Symbiodinium, Belize Mesoamerican Barrier Reef System (MBRS), 2014-2015 | This dataset contains relative abundance (counts?) of operational taxonomic units (OTUs) from Sumbiodinium samples collected from three coral species (S. siderea, S. radians, and P. strigosa) at nine sites across four latitudes along the Belize MBRS in 2014 and 2015. These sites were previously characterized into three thermally distinct regimes (lowTP, modTP, highTP) and exhibited variations in coral species diversity and richness.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nspecies_code (unitless)\nSample (unitless)\nsite (unitless)\nthermal_type (unitless)\nlat_location (Latitude, unitless)\nillumina_run (unitless)\notu_diversity (OTU's)\nC1_I (unitless)\nB1_I (unitless)\nC1_II (unitless)\nC1_III (unitless)\nD1a (unitless)\nB1_II (unitless)\nG3 (unitless)\nA4a (unitless)\nB_BG (unitless)\nC3 (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_734674_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_734674/index.htmlTable | https://www.bco-dmo.org/dataset/734674
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_734674.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_734674&showErrors=false&email= | BCO-DMO | bcodmo_dataset_734674 |