BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
griddap Subset tabledap Make A Graph wms files Accessible Title Summary ISO 19115 Info Background Info RSS Email Institution Dataset ID
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_660308.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_660308 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_660308.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_660308/ public CTD summary data from phytoplankton monitoring sites in Juneau, AK sampled from 2015-2016 (SEAK-AHAB project) CTD summary data from phytoplankton monitoring sites in Juneau, AK sampled from 2015-2016 (SEAK-AHAB project)\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\ninvestigator (unitless)\ninstrument (unitless)\nstation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsampling_event (unitless)\ndate (unitless)\ntime_zone (unitless)\ntime_local (unitless)\ndepth (Cast Depth, m)\nsurface_temp (celsius)\ns_salinity (Sea Water Practical Salinity, practical salinity units (PSU))\nb_salinity (Sea Water Practical Salinity, practical salinity units (PSU))\ns_density (kilogram per meter cubed (kg/m3))\nb_density (kilogram per meter cubed (kg/m3))\nmax_fluor (milligram per meter cubed (mg/m3))\ndata_quality (unitless)\ntime (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_660308_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_660308/index.htmlTable https://www.bco-dmo.org/dataset/660308 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_660308.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_660308&showErrors=false&email= BCO-DMO bcodmo_dataset_660308
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_651599.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_651599 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_651599.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_651599/ public CTD-GTC profiles from GEOTRACES-Arctic Section cruise HLY1502 in 2015 (U.S. GEOTRACES Arctic project) CTD-GTC profiles from GEOTRACES-Arctic Section cruise HLY1502 in 2015\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (text)\nEXPOCODE (text)\nSECT_ID (text)\nGEOTRC_EVENTNO (dimensionless)\nSTNNBR (dimensionless)\nCASTNO (dimensionless)\nDATE (unitless)\ntime2 (TIME, HHMM)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nBTMDEPTH (meters)\nINSTRUMENT_ID (dimensionless)\nCTDPRS (DBARS)\nCTDPRS_FLAG_W (dimensionless)\nCTDTMP (degrees celsius)\nCTDTMP_FLAG_W (dimensionless)\nCTDSAL (PSS-78)\nCTDSAL_FLAG_W (dimensionless)\nCTDOXY (UMOL/KG)\nCTDOXY_FLAG_W (dimensionless)\nTRANSM (volts)\nTRANSM_FLAG_W (dimensionless)\nFLUORM (volts)\nFLUORM_FLAG_W (dimensionless)\nDEPTH (meters)\nDEPTH_FLAG_W (Depth, unitless)\nCTDNOBS (dimensionless)\nCTDETIME (SECONDS)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_651599_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_651599/index.htmlTable https://www.bco-dmo.org/dataset/651599 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_651599.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_651599&showErrors=false&email= BCO-DMO bcodmo_dataset_651599
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_4010.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_4010 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_4010.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_4010/ public Descriptive data from Isaacs-Kidd midwater trawls (IKMT) from R/V New Horizon cruise NH1106 in the Guaymas Basin in 2011 (Jumbo Squid Physiology project) Sampling locations, depths, times, etc. from midwater trawls performed on the NH1106 cruise in the Guaymas Basin. Samples are archived in the biocuration facility at Oregon State University.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (text)\ninstrument (text)\ntow (integer)\nlocation (text)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntarget_depths (meters)\ntarget_depth_min (meters)\ntarget_depth_max (meters)\nday_or_night (text)\ndepth_btm_min (Depth, meters)\ndepth (m)\ndate_start (unitless)\ntime_start (HH:MM)\ntime_end (HH:MM)\ntime_start_target_depth (HH:MM)\ntime_end_target_depth (HH:MM)\nsog_min (knots)\nsog_max (knots)\nwire_out_max (meters)\nportion_cod_end_filled (fraction)\npcnt_catch_preserved (percent (%))\nno_jars_preserved (integer)\nnotes (text)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_4010_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_4010/index.htmlTable https://www.bco-dmo.org/dataset/4010 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_4010.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_4010&showErrors=false&email= BCO-DMO bcodmo_dataset_4010
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_785167.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_785167 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_785167/ public Eastern oyster gonad methylation patterns in response to experimental ocean acidification Eastern oyster gonad methylation patterns in response to experimental ocean acidification at pCO2 levels 400 and 2800 ppm. Oysters were collected from an intertidal oyster reef in Plum Island Sound, MA, Gulf of Maine in mid-July 2016. This dataset includes GenBank BioProject PRJNA513384 metadata.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\nMBD_cv_id (unitless)\npCO2_treatment (P CO2 Treatment, ppm)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_785167_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_785167/index.htmlTable https://www.bco-dmo.org/dataset/785167 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_785167.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_785167&showErrors=false&email= BCO-DMO bcodmo_dataset_785167
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781862 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781862.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_781862/ public Environmental, sensory data  (temperature, light intensity, salinity, pH, dissolved oxygen, depth) sampled in August 2019 in Carrie Bow Caye, Belize Environmental, sensory data  (temperature, light intensity, salinity, pH, dissolved oxygen, depth) sampled in August 2019 in Carrie Bow Caye, Belize\n\ncdm_data_type = Other\nVARIABLES:\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)\nISO_DateTime_UTC (ISO Date Time UTC, unitless)\nTemperature (degrees Celcius (°C))\nLight_Intensity (lux (lx))\nInstrument (unitless)\ndepth (m)\nSalinity (Sea Water Practical Salinity, parts per thousand)\nDissolved_Oxygen (Volume Fraction Of Oxygen In Sea Water, milligram per liter (mg/l))\npH (Sea Water Ph Reported On Total Scale, molar concentrations of H ions)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_781862_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_781862/index.htmlTable https://www.bco-dmo.org/dataset/781862 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_781862.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_781862&showErrors=false&email= BCO-DMO bcodmo_dataset_781862
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_672511.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_672511 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_672511.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_672511/ public Event log for GEOTRACES Southwestern Atlantic Transect cruise RSS/James Cook JC057 leg 3, March 2011 (GEOTRACES-SWAT project) Event log for GEOTRACES Southwestern Atlantic Transect cruise RSS/James Cook JC057 leg 3, March 2011 (GEOTRACES-SWAT project).\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation (unitless)\ncast (unitless)\ninstrument (unitless)\naction (unitless)\ndate (unitless)\ntime2 (Time, unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_672511_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_672511/index.htmlTable https://www.bco-dmo.org/dataset/672511 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_672511.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_672511&showErrors=false&email= BCO-DMO bcodmo_dataset_672511
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783679.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783679 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783679.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783679/ public Flow cytometry and nutrient analyses data from a tidal study over 48 hours of mangrove, seagrass, and seawater from the US Virgin Islands in July of 2017 Data from a tidal study over 48 hours of mangrove, seagrass, and seawater from the US Virgin Islands in 2017.  These data include tidal height, depth, temperature, salinity, Prochlorococcus counts, Synechococcus counts, Picoeukaryote abundances, nutrient concentrations at accession numbers for sequences at The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nNCBI_BioProject_accession_number (NCBI Bio Project Accession Number, unitless)\nNCBI_BioSample_accession_number (NCBI Bio Sample Accession Number, unitless)\nSample_type (unitless)\nSequencing_Strategy (unitless)\nSequencing_Instrument_model (unitless)\nSequencing_strategy (unitless)\nSite_Name (unitless)\nBiome (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_Date (unitless)\nCollection_Time (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nTide (unitless)\nTide_Height (Sea Surface Height, meters (m))\nTime_elapsed_between_tide_timepoint_and_collection (Sea Surface Height, minutes)\ndepth (Collection Depth, m)\nSite_Depth (meters (m))\nTemperature (degrees Celsius (ºC))\nSalinity (Sea Water Practical Salinity, Practical Salinity Units (PSU))\nProchlorococcus (cells per milliliter (cells/ml))\nSynechococcus (cells per milliliter (cells/ml))\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_783679_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783679/index.htmlTable https://www.bco-dmo.org/dataset/783679 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783679.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783679&showErrors=false&email= BCO-DMO bcodmo_dataset_783679
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_522646.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_522646 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_522646.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_522646/ public GTC CTD down casts along the US GEOTRACES East Pacific Zonal Transect from the R/V Thomas G. Thompson TN303 cruise in the tropical Pacific from Peru to Tahiti during 2013 (U.S. GEOTRACES EPZT project) GTC CTD down casts along the US GEOTRACES East Pacific Zonal Transect from the R/V Thomas G. Thompson TN303 cruise in the tropical Pacific from Peru to Tahiti during 2013.\n\ncdm_data_type = Other\nVARIABLES:\nDATASET_ID (text)\nEXPOCODE (text)\nSECT_ID (text)\nGEOTRC_EVENTNO (dimensionless)\nSTNNBR (dimensionless)\nCASTNO (dimensionless)\nDATE (unitless)\ntime2 (TIME, HHMM)\ntime (ISO DATE TIME, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nBTMDEPTH (meters)\nINSTRUMENT_ID (dimensionless)\nCTDPRS (DBARS)\nCTDPRS_FLAG_W (dimensionless)\nCTDTMP (degrees celsius)\nCTDTMP_FLAG_W (dimensionless)\nCTDSAL (PSS-78)\nCTDSAL_FLAG_W (dimensionless)\nCTDOXY (UMOL/KG)\nCTDOXY_FLAG_W (dimensionless)\nTRANSM (volts)\nTRANSM_FLAG_W (dimensionless)\nFLUORM (volts)\nFLUORM_FLAG_W (dimensionless)\nTURBDTY (volts)\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_522646_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_522646/index.htmlTable https://www.bco-dmo.org/dataset/522646 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_522646.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_522646&showErrors=false&email= BCO-DMO bcodmo_dataset_522646
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_747948/ public Illumina sequencing data from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin Illumina sequencing data (NCBI accession numbers) from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin.\n\ncdm_data_type = Other\nVARIABLES:\nsequence_accession_number (unitless)\nlink (unitless)\nSpecies_Names (unitless)\ndescription_of_the_types_of_sequences (unitless)\nlocations_where_species_were_collected (unitless)\nlatitude_dms (Latitude, unitless)\nlongitude_dms (Longitude, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nVessel (unitless)\nDive_number (unitless)\nsequencing_and_analysis_methods (unitless)\ninstrument_and_model (unitless)\nAnalysis_methods (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_747948_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_747948/index.htmlTable https://www.bco-dmo.org/dataset/747948 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_747948.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_747948&showErrors=false&email= BCO-DMO bcodmo_dataset_747948
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753343.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753343 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753343.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753343/ public Metagenomic, metatranscriptomic, and single cell sequencing data from an Environmental Sample Processor deployment in Monterey Bay, CA in 2016. These metagenomic and metatranscriptomic time-series data cover a 52-day period in the fall of 2016 during an intense bloom of the dinoflagellate Akashiwo sanguinea in Monterey Bay, CA, USA. The dataset comprises 84 metagenomes, 82 metatranscriptomes, and 88 16S rRNA amplicon libraries that capture the functions and taxonomy the bacterial and archaeal community. In addition, 88 18S rRNA amplicon libraries describe the taxonomy of the eukaryotic community during the bloom. Microbial cells were collected at station M0 using the moored autonomous robotic Environmental Sample Processor (ESP) instrument and preserved with RNAlater in the instrument until retrieval.\n\ncdm_data_type = Other\nVARIABLES:\nGOLD_Project_ID (unitless)\nAnalysis_Project_Name (unitless)\nType (unitless)\nAssembly_Method (unitless)\nCollection_Date (unitless)\nInstrument (unitless)\nJGI_Contigs_Link (unitless)\nJGI_Project_ID (unitless)\nJGI_Sample_ID (unitless)\nJGI_Sequencing_Project_ID (unitless)\nJGI_Sequencing_Project_Name (unitless)\nLatitude_and_Longitude (Longitude, unitless)\nNCBI_BioProject_Accession (NCBI Bio Project Accession, unitless)\nNCBI_BioSample_Accession (NCBI Bio Sample Accession, unitless)\nNCBI_Project_ID (unitless)\nNCBI_SRA_Accession_ID (unitless)\nSample_Name (unitless)\nSequencing_Run_Mode (unitless)\nTotal_Bases (unitless)\nVolume_Seawater_Filtered (milliliters (mL))\nenv_biome (unitless)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_753343_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753343/index.htmlTable https://www.bco-dmo.org/dataset/753343 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753343.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753343&showErrors=false&email= BCO-DMO bcodmo_dataset_753343
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745518/ public Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community.  Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).  Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021.\\r\\n\\r\\nThese data were published in Hu et al. (2018).\n\ncdm_data_type = Other\nVARIABLES:\nSRA_run (unitless)\nSRA_run_link (unitless)\nSRA_study (unitless)\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nsample_name (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745518_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745518/index.htmlTable https://www.bco-dmo.org/dataset/745518 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745518.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745518&showErrors=false&email= BCO-DMO bcodmo_dataset_745518
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745527/ public NCBI accession metadata for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 Raw DNA and RNA V4 tag sequences include spatially and temporally distinct samples from coastal California.  Samples were collected in Niskin bottles with a CTD rosette at the San Pedro Ocean Time-series (SPOT) between April of 2013 and January of 2014.  This dataset contains sequence data accession numbers and metadata for the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP070577, BioProject: PRJNA311248).\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletpe2 (unitless)\nfilename2 (unitless)\ndepth2 (Depth, various)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745527_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745527/index.htmlTable https://www.bco-dmo.org/dataset/745527 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745527.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745527&showErrors=false&email= BCO-DMO bcodmo_dataset_745527
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700961/ public NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) These data include sample information and accession links to sequence data at\nThe National Center for Biotechnology Information (NCBI) Sequence Read Archive\n(SRA).\n \nThis data submission consists of metabarcoding data for the zooplankton\ncommunity in the epipelagic, mesopelagic and upper bathypelagic zones\n(0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to\nassess the hidden diversity present in zooplankton assemblages in midwaters,\nand detect vertical gradients in species richness, depth distributions, and\ncommunity composition of the full zooplankton assemblage. Samples were\ncollected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square\nMultiple Opening and Closing Nets and Environmental Sampling System (MOCNESS,\n200um mesh), on R/V Falkor cruise FK140613. \\u00a0Next generation sequence\ndata (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton\nassemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers\ndescribed in Fonseca et al. 2010). The data includes sequences and read count\nabundance information for molecular OTUs from both holoplanktonic and\nmeroplanktonic taxa\n \nRelated dataset containing OTU tables and fasta sequences (representative /\nmost abundance read for each OTU):  \n[Metabarcoding zooplankton at ](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[station](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[ ALOHA: OTU tables and ](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[fasta](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[ files](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nanalysis_name (unitless)\n... (15 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_700961_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700961/index.htmlTable https://www.bco-dmo.org/dataset/700961 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700961.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700961&showErrors=false&email= BCO-DMO bcodmo_dataset_700961
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_522713.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_522713 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_522713.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_522713/ public ODF CTD down casts along the US GEOTRACES East Pacific Zonal Transect from the R/V Thomas G. Thompson TN303 cruise in the tropical Pacific from Peru to Tahiti during 2013 (U.S. GEOTRACES EPZT project) ODF CTD down casts along the US GEOTRACES East Pacific Zonal Transect from the R/V Thomas G. Thompson TN303 cruise in the tropical Pacific from Peru to Tahiti during 2013.\n\ncdm_data_type = Other\nVARIABLES:\nDATASET_ID (text)\nEXPOCODE (text)\nSECT_ID (text)\nGEOTRC_EVENTNO (dimensionless)\nSTNNBR (dimensionless)\nCASTNO (dimensionless)\nDATE (unitless)\ntime2 (TIME, HHMM)\ntime (ISO DATE TIME, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nBTMDEPTH (meters)\nINSTRUMENT_ID (dimensionless)\nCTDPRS (DBARS)\nCTDPRS_FLAG_W (dimensionless)\nCTDTMP (degrees celsius)\nCTDTMP_FLAG_W (dimensionless)\nCTDSAL (PSS-78)\nCTDSAL_FLAG_W (dimensionless)\nCTDOXY (UMOL/KG)\nCTDOXY_FLAG_W (dimensionless)\nTRANSM (volts)\nTRANSM_FLAG_W (dimensionless)\nFLUORM (volts)\nFLUORM_FLAG_W (dimensionless)\nTURBDTY (volts)\n... (9 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_522713_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_522713/index.htmlTable https://www.bco-dmo.org/dataset/522713 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_522713.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_522713&showErrors=false&email= BCO-DMO bcodmo_dataset_522713
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_711846.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_711846 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_711846.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_711846/ public Phytoplankton abudance and physical environmental data from niskin bottles off the coast of Juneau, Alaska from 2015-2016 (SEAK-AHAB project) Phytoplankton abudance and physical environmental data from niskin bottles off the coast of Juneau, Alaska from 2015-2016 (SEAK-AHAB project)\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\ninvestigator (unitless)\ninstrument (unitless)\nstation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsite_type (unitless)\nsampling_event (unitless)\ndate (unitless)\ntime_zone (unitless)\ntime_local (unitless)\nair_temp (celsius)\nsurface_salinity (Sea Water Practical Salinity, parts per thousand (PPT))\nsurface_temp (celsius)\nweather (unitless)\ntide (unitless)\ndepth (m)\ndinoflagellates (cells per liter (cells/L))\ndiatoms (cells per Liter (cells/L))\nAlexandrium_sp (cells per Liter (cells/L))\ntime (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_711846_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_711846/index.htmlTable https://www.bco-dmo.org/dataset/711846 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_711846.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_711846&showErrors=false&email= BCO-DMO bcodmo_dataset_711846
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_660429.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_660429 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_660429.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_660429/ public Phytoplankton abudance and physical environmental data from off the coast of Juneau, Alaska from 2015-2016 (SEAK-AHAB project) Phytoplankton abudance and physical environmental data from off the coast of Juneau, Alaska from 2015-2016 (SEAK-AHAB project)\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\ninvestigator (unitless)\ninstrument (unitless)\nstation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsite_type (unitless)\nsampling_event (unitless)\ndate (unitless)\ntime_zone (unitless)\ntime_local (unitless)\nair_temp (celsius)\nsurface_salinity (Sea Water Practical Salinity, parts per thousand (PPT))\nsurface_temp (celsius)\nweather (unitless)\ntide (unitless)\ndepth (m)\ndinoflagellates (count)\ndiatoms (count)\nAlexandrium_sp (count)\nISO_DateTime_Local (ISO Date Time Local, unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_660429_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_660429/index.htmlTable https://www.bco-dmo.org/dataset/660429 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_660429.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_660429&showErrors=false&email= BCO-DMO bcodmo_dataset_660429
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3953.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3953 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3953.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3953/ public Scientific sampling event log from R/V Endeavor cruise EN524 along the continental shelf of New England in 2013 (OA, Hypoxia and Warming project) Scientific sampling event log from R/V Endeavor cruise EN524 along the continental shelf of New England in 2013.\n\ncdm_data_type = Other\nVARIABLES:\nevent (unitless)\nsci_event (integer)\ninstrument (dimensionless)\naction (dimensionless)\nmonth_utc (unitless)\nday_utc (unitless)\nyear (unitless)\ntime_utc (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nstation (dimensionless)\ndepth_w (Depth, meters)\ndepth (m)\nlatitude (degrees_north)\nlongitude (degrees_east)\nauthor (dimensionless)\ncomment (dimensionless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3953_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3953/index.htmlTable https://www.bco-dmo.org/dataset/3953 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3953.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3953&showErrors=false&email= BCO-DMO bcodmo_dataset_3953
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3739 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3739.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3739/ public Scientific sampling event log from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012 (NA-VICE project) Scientific sampling event log from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012. The scientific sampling event log was created using v1.0 of the Rolling Deck to Repository (R2R) event log application.\n\ncdm_data_type = Other\nVARIABLES:\nevent (unitless)\ndate_utc (unitless)\ntime_utc (HHMM)\ninstrument (text)\naction (text)\ntransect (dimensionless)\nstation (dimensionless)\ncast (dimensionless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_w (Depth, meters)\nauthor (text)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\ncomment (text)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3739_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3739/index.htmlTable https://www.bco-dmo.org/dataset/3739 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3739.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3739&showErrors=false&email= BCO-DMO bcodmo_dataset_3739
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_4008 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_4008.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_4008/ public Scientific sampling event log from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013 (Deep Atlantic DOM project) Scientific sampling event log from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013 (Deep Atlantic DOM project).\n\ncdm_data_type = Other\nVARIABLES:\nevent (dimensionless)\ndate_utc (unitless)\ntime_utc (HHMM)\ninstrument (dimensionless)\naction (dimensionless)\nstation (dimensionless)\ncast (dimensionless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nseafloor (meters)\nauthor (dimensionless)\ncomment (dimensionless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_4008_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_4008/index.htmlTable https://www.bco-dmo.org/dataset/4008 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_4008.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_4008&showErrors=false&email= BCO-DMO bcodmo_dataset_4008
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2429.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2429 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2429.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2429/ public Seabird 911 CTD data from R/V Oceanus and R/V Edwin Link cruises OC301, OC303, EL9904, and EL9905 in the Gulf of Maine and Georges Bank from 1997-1999 as part of the U.S. GLOBEC program (GB project) Seabird 911 CTD data from R/V Oceanus and R/V Edwin Link cruises OC301, OC303, EL9904, and EL9905 in the Gulf of Maine and Georges Bank from 1997-1999 as part of the U.S. GLOBEC program.\n\ncdm_data_type = Other\nVARIABLES:\nyear (nd)\nship (nd)\ncruiseid (nd)\ninstrument (nd)\npi (nd)\neventno (nd)\nyrday0_utc_range (decyd:decyd)\nyrday0_local_range (decyd:decyd)\nlon_range (decdeg:decdeg)\nlat_range (Latitude, decdeg:decdeg)\nctd_range (cast:cast)\ndepth_w_range (Depth, meters:meters)\nsite (nd)\ncomments (nd)\nyrday0_utc ((noon Jan 1st = 0.5))\nyrday0_local (decimal yd)\ncast (nd)\nstation (nd)\ndepth_w (Depth, meters)\nlongitude (degrees_east)\nlatitude (degrees_north)\npress (decibars)\ntemp_ctd (degC)\nsal_ctd (PSU)\nsigmat (kg/m3 -1000)\nflvolt (volts)\nlight_tran_v (volts)\npar_scalar_v (volts)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2429_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2429/index.htmlTable https://www.bco-dmo.org/dataset/2429 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2429.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2429&showErrors=false&email= BCO-DMO bcodmo_dataset_2429
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746654.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746654 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746654.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_746654/ public Trichodesmium AHL amendment metatranscriptomic reads accessions and metadata Trichodesmium is a marine, diazotrophic cyanobacterium that plays a central role in the biogeochemical cycling of carbon and nitrogen. Colonies ubiquitously co-occur with a diverse microbiome of heterotrophic bacteria. Here we show that manipulation of the microbiome with quorum sensing acyl homoserine lactone (AHL) molecules significantly modulated rates of N2 fixation by Trichodesmium collected from the western North Atlantic, with both positive and negative effects of varied magnitude. Changes in Trichodesmium N2 fixation did not clearly correlate with changes in microbiome composition or geochemical patterns. Metatranscriptome sequencing revealed significant changes in the relative abundance of microbiome transcripts encoding metabolic functions consistent with quorum sensing responses in model bacteria. There was little overlap in specific microbiome transcriptional responses to AHL addition between stations, and this variability in microbiome gene expression may underpin the heterogeneous changes in Trichodesmium N2 fixation. These data suggest the microbiome could play a large and previously overlooked role in modulating Trichodesmium N2 fixation. This metadata form describes the metatranscriptomic sequencing reads that were used in the study.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nassembly (unitless)\nfilename (unitless)\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_746654_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_746654/index.htmlTable https://www.bco-dmo.org/dataset/746654 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_746654.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_746654&showErrors=false&email= BCO-DMO bcodmo_dataset_746654
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658946 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658946.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658946/ public Water samples from CTD casts and vehicle-mounted bottles from the R/V Atlantis, R/V Ronald Brown, R/V Falkor, & E/V Nautilus in the Gulf of Mexico & Florida from 2010 to 2014 (Lophelia OA project) Water samples from CTD casts and vehicle-mounted bottles from the R/V Atlantis, R/V Ronald Brown, R/V Falkor, & E/V Nautilus in the Gulf of Mexico & Florida from 2010 to 2014 (Lophelia OA project)\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (unitless)\ncruise_id (unitless)\nsite (unitless)\ninstrument (unitless)\nmeasurement_location (unitless)\nsample_ID (unitless)\nyear (unitless)\nmonth (unitless)\nday\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nsalinity (Sea Water Practical Salinity, practical salinity units (PSU))\npressure (decibar (dbar))\ntemperature (celsius)\nmeasured_temp (celsius)\ninput_pH (Input P H, total pH scale)\nTA (micromoles per killigram (umol/kg))\nnTA (N TA, micromoles per killigram (umol/kg))\npHT (P HT, total pH scale)\nomega_aragonite (unitless)\nDIC (micromoles per killigram (umol/kg))\npCO2 (P CO2, microatomospheres (uatm))\nrevelle_factor (unitless)\nbicarbonate_ion (micromoles per killigram (umol/kg))\ncarbonate_ion (micromoles per killigram (umol/kg))\nTA_DIC (unitless)\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_658946_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658946/index.htmlTable https://www.bco-dmo.org/dataset/658946 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658946.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658946&showErrors=false&email= BCO-DMO bcodmo_dataset_658946

 
ERDDAP, Version 2.02
Disclaimers | Privacy Policy | Contact