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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745527/ public [18S rRNA gene tag sequences from DNA and RNA] - NCBI accession metadata for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) Raw DNA and RNA V4 tag sequences include spatially and temporally distinct samples from coastal California.  Samples were collected in Niskin bottles with a CTD rosette at the San Pedro Ocean Time-series (SPOT) between April of 2013 and January of 2014.  This dataset contains sequence data accession numbers and metadata for the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP070577, BioProject: PRJNA311248).\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletpe2 (unitless)\nfilename2 (unitless)\ndepth2 (Depth, various)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_745527_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745527_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745527/index.htmlTable https://www.bco-dmo.org/dataset/745527 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745527.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745527&showErrors=false&email= BCO-DMO bcodmo_dataset_745527
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739077/ public [Community 16S rRNA gene sequences] - Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters) Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (Bio Project, unitless)\nstudy (unitless)\nsample_description (unitless)\nyear (unitless)\nnum_sequences (unitless)\nNCBI_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_739077_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739077/index.htmlTable https://www.bco-dmo.org/dataset/739077 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739077.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739077&showErrors=false&email= BCO-DMO bcodmo_dataset_739077
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762511/ public [Coral colony sequece accessions: Hidden resilience to recurrent bleaching] - RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa) RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. This dataset includes accession numbers for 36 RNAseq libraries housed at The National Center for Biotechnology Information (NCBI).\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ncolony (unitless)\nspecies (uniless)\ndate (unitless)\nyear (unitless)\nmonth (unitless)\nbleaching_status (percent)\nAccession (unitless)\nAccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_762511_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762511/index.htmlTable https://www.bco-dmo.org/dataset/762511 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762511.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762511&showErrors=false&email= BCO-DMO bcodmo_dataset_762511
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762497/ public [Coral colony sequence accessions: The genomics of recovery from coral bleaching] - Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa) Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndate (unitless)\ncolony (unitless)\nbleaching_status (percent (%))\naccession (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nspecies (unitless)\naccession_link (untiless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_762497_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_762497_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762497/index.htmlTable https://www.bco-dmo.org/dataset/762497 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762497.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762497&showErrors=false&email= BCO-DMO bcodmo_dataset_762497
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_706167 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_706167/ public [Deep convection simulation using MITgcm] - Deep convection simulation from the MITgcm (MIT General Circulation Model) (IVOMLS project) (Interannual variability of oxygen and macro-nutrients in the Labrador Sea) This dataset includes deep convection simulation output from the MITgcm (MIT\nGeneral Circulation Model). The data include profiles under different\nsituations in an idealized domain. \\u00a0The experiment was based\non\\u00a0winter Labrador Sea\\u00a0conditions.\n \nModel output\\u00a0is\\u00a0available to download as MATLAB .mat files by\nclicking the \\Get Data\\ link. \\u00a0Each file includes the output of one run\ncovering 90 days.  \n * Contents of .mat files described in\n\\u00a0[mat_file_variables.csv](\\\\http://dmoserv3.whoi.edu/data_docs/IVOMLS/MITgcm/mat_file_variables.csv\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nexperiment_name (unitless)\nexperiment_type (unitless)\ncomment (unitless)\nfilesize (unitless)\nfile_download_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_706167_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_706167/index.htmlTable https://www.bco-dmo.org/dataset/706167 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_706167.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_706167&showErrors=false&email= BCO-DMO bcodmo_dataset_706167
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753343.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753343 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753343.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753343/ public [ESP 2016 Seq] - Metagenomic, metatranscriptomic, and single cell sequencing data from an Environmental Sample Processor deployment in Monterey Bay, CA in 2016. (Bacterial Taxa that Control Sulfur Flux from the Ocean to the Atmosphere) These metagenomic and metatranscriptomic time-series data cover a 52-day period in the fall of 2016 during an intense bloom of the dinoflagellate Akashiwo sanguinea in Monterey Bay, CA, USA. The dataset comprises 84 metagenomes, 82 metatranscriptomes, and 88 16S rRNA amplicon libraries that capture the functions and taxonomy the bacterial and archaeal community. In addition, 88 18S rRNA amplicon libraries describe the taxonomy of the eukaryotic community during the bloom. Microbial cells were collected at station M0 using the moored autonomous robotic Environmental Sample Processor (ESP) instrument and preserved with RNAlater in the instrument until retrieval.\n\ncdm_data_type = Other\nVARIABLES:\nGOLD_Project_ID (unitless)\nAnalysis_Project_Name (unitless)\nType (unitless)\nAssembly_Method (unitless)\nCollection_Date (unitless)\nInstrument (unitless)\nJGI_Contigs_Link (unitless)\nJGI_Project_ID (unitless)\nJGI_Sample_ID (unitless)\nJGI_Sequencing_Project_ID (unitless)\nJGI_Sequencing_Project_Name (unitless)\nLatitude_and_Longitude (Longitude, unitless)\nNCBI_BioProject_Accession (NCBI Bio Project Accession, unitless)\nNCBI_BioSample_Accession (NCBI Bio Sample Accession, unitless)\nNCBI_Project_ID (unitless)\nNCBI_SRA_Accession_ID (unitless)\nSample_Name (unitless)\nSequencing_Run_Mode (unitless)\nTotal_Bases (unitless)\nVolume_Seawater_Filtered (milliliters (mL))\nenv_biome (unitless)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_753343_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_753343_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753343/index.htmlTable https://www.bco-dmo.org/dataset/753343 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753343.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753343&showErrors=false&email= BCO-DMO bcodmo_dataset_753343
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747948.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_747948/ public [Illumina Sequences] - Illumina sequencing data from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin (Collaborative Research: The Role of Iron-oxidizing Bacteria in the Sedimentary Iron Cycle: Ecological, Physiological and Biogeochemical Implications) Illumina sequencing data (NCBI accession numbers) from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin.\n\ncdm_data_type = Other\nVARIABLES:\nsequence_accession_number (unitless)\nlink (unitless)\nSpecies_Names (unitless)\ndescription_of_the_types_of_sequences (unitless)\nlocations_where_species_were_collected (unitless)\nlatitude_dms (Latitude, unitless)\nlongitude_dms (Longitude, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nVessel (unitless)\nDive_number (unitless)\nsequencing_and_analysis_methods (unitless)\ninstrument_and_model (unitless)\nAnalysis_methods (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_747948_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_747948_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_747948/index.htmlTable https://www.bco-dmo.org/dataset/747948 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_747948.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_747948&showErrors=false&email= BCO-DMO bcodmo_dataset_747948
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_627835.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_627835 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_627835.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_627835/ public [Inferno vent plume proteins-Av1] - Proteins identified from the black smoker chimney Inferno hydrothermal vent plume meta-proteome - replicate Av1 - on the Axial seamount off the coast of Washington in 2011. (Mixotrophic bacteria and the cryptic marine sulfur cycle: Mechanisms of carbon assimilation and sulfur oxidation in the Arctic96BD-19 GSO clade) Proteins identified in the Inferno hydrothermal vent plume meta-proteome\n(replicate Av1).\\u00a0 Only proteins identified by peptides with a protein\nprobability >0.9 are listed.\\u00a0\n \nThese data are reported as Supplementary Table 3 and discussed in [Mattes et\nal., 2013](\\\\http://dmoserv3.bco-\ndmo.org/data_docs/SulfurOxidizers/Mattes_2013_PlumeProt.pdf\\\\).\n(doi:10.1038/ismej.2013.113)\n \nThe FASTA information in the data was expanded to include the metadata when\nthose FASTA headers were linked to GenBank.\\u00a0\n \nProteins that were identified in biological replicate Av2 that were not\nidentified in biological replicate Av1. (GSO: Gamma Sulfur Oxidizer)\n \n  \n \\u00a0\n \n\\u00a0\n \n\\u00a0\n \n\\u00a0\n \n\\u00a0\n \n\\Although fewer proteins were identified in Av2, nearly all (94%) of the\nproteins identified in Av2 were also identified in Av1.\\u00a0 Differences in\nthe total number of proteins identified in replicate samples may result from\ndifferences in the amount of biomass obtained during sample processing.\\\n \nDMO notes:  \n Put multiple FASTA entries on separate lines  \n Split out one number in FASTA header for linking  \n Left it sorted by Total Independent Spectra column  \n Added linkage column  \n Removed commas in 'consensus annotation' column (signals database to put in\nnew column)  \n Reordered columns to put KEGG last -- much longer than any other column\n\ncdm_data_type = Other\nVARIABLES:\nentry (number)\n... (10 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_627835_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_627835_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_627835/index.htmlTable https://www.bco-dmo.org/dataset/627835 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_627835.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_627835&showErrors=false&email= BCO-DMO bcodmo_dataset_627835
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665288 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665288.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_665288/ public [Isolate information] - Isolate information on genes found in samples collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula in 2014 (Polar Transcriptomes project). (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators) Isolate information on genes found in samples collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula in 2014 (Polar Transcriptomes project).\n\ncdm_data_type = Other\nVARIABLES:\npolar_diatoms (unitless)\nstrain_ID (unitless)\nPalmerLTER_station (Palmer LTER Station, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nGenBank_bestHit (Gen Bank Best Hit, unitless)\npercentSimilarity_bestHit (Percent Similarity Best Hit, percent)\naccession_number (unitless)\naccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_665288_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_665288_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_665288/index.htmlTable https://www.bco-dmo.org/dataset/665288 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_665288.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_665288&showErrors=false&email= BCO-DMO bcodmo_dataset_665288
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700961.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700961/ public [Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers] - NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) (Basin-scale genetics of marine zooplankton) These data include sample information and accession links to sequence data at\nThe National Center for Biotechnology Information (NCBI) Sequence Read Archive\n(SRA).\n \nThis data submission consists of metabarcoding data for the zooplankton\ncommunity in the epipelagic, mesopelagic and upper bathypelagic zones\n(0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to\nassess the hidden diversity present in zooplankton assemblages in midwaters,\nand detect vertical gradients in species richness, depth distributions, and\ncommunity composition of the full zooplankton assemblage. Samples were\ncollected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square\nMultiple Opening and Closing Nets and Environmental Sampling System (MOCNESS,\n200um mesh), on R/V Falkor cruise FK140613. \\u00a0Next generation sequence\ndata (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton\nassemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers\ndescribed in Fonseca et al. 2010). The data includes sequences and read count\nabundance information for molecular OTUs from both holoplanktonic and\nmeroplanktonic taxa\n \nRelated dataset containing OTU tables and fasta sequences (representative /\nmost abundance read for each OTU):  \n[Metabarcoding zooplankton at ](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[station](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[ ALOHA: OTU tables and ](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[fasta](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)[ files](\\\\http://www.bco-\ndmo.org/dataset/700279\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nanalysis_name (unitless)\n... (15 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_700961_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_700961_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700961/index.htmlTable https://www.bco-dmo.org/dataset/700961 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700961.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700961&showErrors=false&email= BCO-DMO bcodmo_dataset_700961
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745518/ public [Microbial eukaryotic focused metatranscriptome data] - Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community.  Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).  Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021.\\r\\n\\r\\nThese data were published in Hu et al. (2018).\n\ncdm_data_type = Other\nVARIABLES:\nSRA_run (unitless)\nSRA_run_link (unitless)\nSRA_study (unitless)\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nsample_name (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745518_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745518/index.htmlTable https://www.bco-dmo.org/dataset/745518 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745518.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745518&showErrors=false&email= BCO-DMO bcodmo_dataset_745518
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665407 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665407.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_665407/ public [Presence and absence of iron and light-related functional genes] - Presence and absence of iron and light-related functional genes collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project) (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators) Presence and absence of iron and light-related functional genes collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project)\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\ndescription (unitless)\nprotein (unitless)\nRPKM (unitless)\nevalue (unitless)\nKO_num (unitless)\naccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_665407_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_665407/index.htmlTable https://www.bco-dmo.org/dataset/665407 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_665407.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_665407&showErrors=false&email= BCO-DMO bcodmo_dataset_665407
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_675040 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_675040/ public [Salp genome and transcriptome] - Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project) (Population ecology of Salpa thompsoni based on molecular indicators) This dataset reports Salpa thompsoni specimens used for\ngenomics/transcriptomics with their GenBank accession links.\n \nRelated Dataset: [Salp sample log](\\\\https://www.bco-\ndmo.org/dataset/672600\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nspecimen (unitless)\ncruise_id (unitless)\nstation (unitless)\nlength (millimeters)\nSRA_accession (unitless)\nBioSample_accession (Bio Sample Accession, unitless)\nSRA_accession_link (unitless)\nBioSample_accession_link (Bio Sample Accession Link, unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_675040_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_675040/index.htmlTable https://www.bco-dmo.org/dataset/675040 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_675040.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_675040&showErrors=false&email= BCO-DMO bcodmo_dataset_675040
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728395 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_728395/ public [Sediment trap gel images] - Sediment trap gel images of settled particles that were collected from the Sargasso Sea between 2013 and 2014. (Rapid, Autonomous Particle Flux Observations in the Oligotrophic Ocean) Sinking particle sizes span many orders of magnitude and the relative influence of small particles on carbon export compared to large particles has not been resolved. To determine the influence of particle size on carbon export, the flux of both small (11\\u201364 \\u03bcm) and large (>64 \\u03bcm) particles in the upper mesopelagic was examined during five cruises of the Bermuda Atlantic Time Series (BATS) in the Sargasso Sea using neutrally buoyant sediment traps mounted with tubes containing polyacrylamide gel layers to preserve sizes and shapes of sinking particles. Microphotographic images of gels were collected and used to determine particle size distributions.\n\ncdm_data_type = Other\nVARIABLES:\nYear (unitless)\nMonth (unitless)\nImage_zip_download_link (unitless)\nZip_size (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_728395_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_728395/index.htmlTable https://www.bco-dmo.org/dataset/728395 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_728395.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_728395&showErrors=false&email= BCO-DMO bcodmo_dataset_728395
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_681997 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_681997/ public [Temporal genetic patterns in plankton] - Data from: Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It’s about time: Insights into temporal genetic patterns in oceanic zooplankton from biodiversity indices. (Basin-scale genetics of marine zooplankton) This dataset\\u00a0consists of mitochondrial sequence data and specimen\ninformation for two species of copepods, Haloptilus longicornis and\nPleuromamma xiphias, collected at an open ocean time series site in the North\nPacific Subtropical Gyre (station ALOHA, 22.45N, 158W) during 11 of the\nroutine Hawai'i Ocean Time-series (HOT) research cruises from September of\n2012 to October of 2013 (HOT-246 to HOT-256).\\u00a0Data for Haloptilus\nlongicornis include\\u00a0a 546 base-pair fragment of mitochondrial cytochrome\nc oxidase subunit II for each of 483 individuals (mean of 44 animals per\ncruise). Data for Pleuromamma xiphias include\\u00a0a 551 base-pair fragment of\nmitochondrial cytochrome c oxidase subunit I for each of 510 individuals (mean\nof 46 animals per cruise). Information is also provided on the HOT cruise\nnumber, date, and specific tow from which each individual was collected. Life\nstage and sex of each animal are also noted when identifiable\n \nThese data are associated with the forthcoming publication:  \n Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It\\u2019s about\ntime: Insights into temporal genetic patterns in oceanic zooplankton from\nbiodiversity indices.\\u00a0 Limnology and Oceanography \\u00a0\n \nThe unique haplotypes in these data are also available under NCBI accession\nnumbers KY560470 - KY560514 [Haloptilus longicornis], KY560515 -\nKY560565\\u00a0[Pleuromamma xiphias].\n \nThe following files have been included in this dataset (note that the sequence\nIDs in these files differ from the NCBI sequence IDs):  \n HOT-HALO.fasta: A fasta-formatted text file containing sequences for a\nportion of the mitochondrial cytochrome c oxidase subunit II gene (COII; 546\nbp) for 483 Haloptilus longicornis individuals collected at Station ALOHA.\n \nHOT-PLXI.fasta: A fasta-formatted text file containing sequences for a portion\nof the mitochondrial cytochrome c oxidase subunit I gene (COI; 551 bp) for 510\nPleuromamma xiphias individuals collected at Station ALOHA.\n \nHALO.csv and PLXI.csv: Converted to csv from an Excel file consisting of one\nworksheet for Haloptilus longicornis and one worksheet for Pleuromamma\nxiphias. In each worksheet, column headings designate:  \n sample_id: the sample ID number associated with the original organism\ncollected, DNA extraction, and PCR amplification.  \n sequence_id: the sample ID number associated with sequences analysed for the\nproject.  \n genus: Genus of the collected organism.  \n species: Species of the collected organism.  \n cruise: The cruise number for the Hawai'i Ocean Time Series (HOT) cruise on\nwhich the specimen was collected.  \n tow: The net tow number on which the specimen was collected.  \n collection_date: The date on which the specimen was collected, formatted as\nyyyy-mm-dd.  \n stage_sex: The life stage (Copepodite or Adult) of the individual, and the\nsex (Copepodite, Female, Male).  \n stage: The life stage (Copepodite or Adult) of the individual. Column added\nby BCO-DMO\\u00a0from the original stage_sex column for ease of use.  \n sex: The sex (Copepodite, Female, or Male) of the individual.\\u00a0Column\nadded by BCO-DMO\\u00a0from the original stage_sex column for ease of use.  \n mtCO*_sequence: The mtDNA sequence (COII for Haloptilus longicornis; COI for\nPleuromamma xiphias) associated with that individual. This sequence matches\nthe sequence associated with the Sequence ID number in the respective fasta\nfile.\n\ncdm_data_type = Other\nVARIABLES:\nfile_link (unitless)\ndescription (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_681997_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_681997/index.htmlTable https://www.bco-dmo.org/dataset/681997 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_681997.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_681997&showErrors=false&email= BCO-DMO bcodmo_dataset_681997
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2468 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2468/ public [w0008 seasoar CTD] - SeaSoar CTD Data from R/V Wecoma cruise W0008 in the Northeast Pacific in 2000 as part of the U.S. GLOBEC program (NEP project) (U.S. GLOBEC Northeast Pacific) SeaSoar CTD data from R/V Wecoma cruise W0008 in the Northeast Pacific in 2000 as part of the U.S. GLOBEC-NEP program.\n\ncdm_data_type = Other\nVARIABLES:\nlink\ndescription\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2468_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2468/index.htmlTable https://www.bco-dmo.org/dataset/2468 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2468.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2468&showErrors=false&email= BCO-DMO bcodmo_dataset_2468

 
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