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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813173.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813173 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813173.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_813173/ public [IODP360 - iTAG and metatranscriptome data] - Supplementary Table 4C: Statistics of reads retained through bioinformatic processing of iTAG data for the 11 samples and control samples and metatranscriptome data. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches) Supplementary Table 4C: Metatranscriptome data summary for cellular activities presented and statistics on sequencing and removal of potential contaminant sequences: Statistics of reads retained through bioinformatic processing of iTAG data for the 11 samples and control samples and metatranscriptome data. Samples  taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\niTAG_Raw (I TAG Raw, number of reads)\niTAG_Paired_QC (I TAG Paired QC, number of reads)\niTAG_Paired_Contmnt_Rem (I TAG Paired Contmnt Rem, number of reads)\niTAG_OTU (I TAG OTU, number of OTUs)\nMetatr_Raw (number of reads)\nMetatr_Paired_QC (number of reads)\nMetatr_Paired_Contmnt_Rem (number of reads)\nMetatr_Reads_Remaining (percentage (%))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_813173_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_813173_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_813173/index.htmlTable https://www.bco-dmo.org/dataset/813173 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_813173.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_813173&showErrors=false&email= BCO-DMO bcodmo_dataset_813173
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734674 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734674.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_734674/ public [MBRS Symbiodinium OTU] - OTU molecular abundances for coral Symbiodinium, Belize Mesoamerican Barrier Reef System (MBRS), 2014-2015 (Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales) This dataset contains relative abundance (counts?) of operational taxonomic units (OTUs) from Sumbiodinium samples collected from three coral species (S. siderea, S. radians, and P. strigosa) at nine sites across four latitudes along the Belize MBRS in 2014 and 2015. These sites were previously characterized into three thermally distinct regimes (lowTP, modTP, highTP) and exhibited variations in coral species diversity and richness.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nspecies_code (unitless)\nSample (unitless)\nsite (unitless)\nthermal_type (unitless)\nlat_location (Latitude, unitless)\nillumina_run (unitless)\notu_diversity (OTU's)\nC1_I (unitless)\nB1_I (unitless)\nC1_II (unitless)\nC1_III (unitless)\nD1a (unitless)\nB1_II (unitless)\nG3 (unitless)\nA4a (unitless)\nB_BG (unitless)\nC3 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_734674_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_734674/index.htmlTable https://www.bco-dmo.org/dataset/734674 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_734674.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_734674&showErrors=false&email= BCO-DMO bcodmo_dataset_734674
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700279/ public [Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files] - Metabarcoding zooplankton at station ALOHA: Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU (Plankton Population Genetics project) (Basin-scale genetics of marine zooplankton) Metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1-meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa.  All results derive from analyses in mothur v1.36.1 (Schloss et al. 2009, Kozich et al. 2013).\n\ncdm_data_type = Other\nVARIABLES:\nanalysis_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nanalysis_description (unitless)\nOTU_ID (unitless)\nFA3_N1_SF1 (per OTU)\nFA3_N1_SF2 (per OTU)\nFA3_N1_SF3 (per OTU)\nFA3_N2_SF1 (per OTU)\nFA3_N2_SF2 (per OTU)\nFA3_N2_SF3 (per OTU)\nFA3_N3_SF1 (per OTU)\nFA3_N3_SF2 (per OTU)\nFA3_N3_SF3 (per OTU)\nFA3_N4_SF1 (per OTU)\nFA3_N4_SF2 (per OTU)\nFA3_N4_SF3 (per OTU)\n... (68 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_700279_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_700279_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700279/index.htmlTable https://www.bco-dmo.org/dataset/700279 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700279.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700279&showErrors=false&email= BCO-DMO bcodmo_dataset_700279
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748064 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748064.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_748064/ public [OTU table for 18S rRNA gene tag sequences from DNA and RNA] - Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) This dataset is a raw output operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from extracted DNA and RNA. Columns represent samples, including month sampled, material (either extracted RNA or DNA), and depth (in meters); thus values in each column represent the number of sequences in that sample that belong to a given OTU (OTUs by row). Each row represents a single OTU. The last column lists the taxonomic identifier assigned to each OTU. The raw sequence data can be found in the NCBI SRA database under accession number SRP070577 with the associated BioProject PRJNA311248.\n\ncdm_data_type = Other\nVARIABLES:\nOTU_ID (unitless)\nApril_150m_DNA (unitless)\nJuly_DCM_DNA (unitless)\nApril_890m_DNA (unitless)\nOct_DCM_DNA (unitless)\nOct_150m_DNA (unitless)\nJuly_150m_DNA (unitless)\nApril_150m_cDNA (April 150m C DNA, unitless)\nJuly_150m_cDNA (July 150m C DNA, unitless)\nJan_DCM_DNA (unitless)\nJan_150m_DNA (unitless)\nApril_CAT_DNA (unitless)\nApril_5m_DNA (unitless)\nJuly_POLA_DNA (unitless)\nJuly_CAT_DNA (unitless)\nJuly_5m_DNA (unitless)\nApril_5m_cDNA (April 5m C DNA, unitless)\nJuly_CAT_cDNA (July CAT C DNA, unitless)\nJuly_5m_cDNA (July 5m C DNA, unitless)\nOct_CAT_DNA (unitless)\nApril_CAT_cDNA (April CAT C DNA, unitless)\n... (29 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_748064_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_748064/index.htmlTable https://www.bco-dmo.org/dataset/748064 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_748064.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_748064&showErrors=false&email= BCO-DMO bcodmo_dataset_748064
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768138 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768138/ public [Palau lakes: invertebrate barcodes] - Specimen log with OTU identifiers collected from Palau marine lakes (Do Parallel Patterns Arise from Parallel Processes?) List of all barcoded specimens of collected invertebrates with sequence name and OTU identifier collected from Palau marine lakes. FASTA files for major invertebrate groups are included in supplemental files.\n\ncdm_data_type = Other\nVARIABLES:\nOTU_id (unitless)\nID (unitless)\nlake_code (unitless)\nSequenceName (Sequence Name, unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nCRRF_ID (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_768138_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768138/index.htmlTable https://www.bco-dmo.org/dataset/768138 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768138.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768138&showErrors=false&email= BCO-DMO bcodmo_dataset_768138
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768196 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768196/ public [Palau lakes: voucher summary] - Voucher summary of invertebrates and barcoded OTU's with field identifications, collected from Palau marine lakes (Do Parallel Patterns Arise from Parallel Processes?) Voucher summary of invertebrates and barcoded OTU's with field identifications, collected from Palau marine lakes.\n\ncdm_data_type = Other\nVARIABLES:\nCRRF_ID (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nID_name (unitless)\nOTU_id (specimens)\nlake_code (unitless)\ncomment (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_768196_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768196/index.htmlTable https://www.bco-dmo.org/dataset/768196 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768196.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768196&showErrors=false&email= BCO-DMO bcodmo_dataset_768196

 
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