Accessing BCO-DMO data
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_628993.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_628993 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_628993.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_628993/ | public | [Incubation in diffuse flow vent fluids - Crab Spa] - Results from shipboard high-pressure incubations of diffuse flow vent fluids collected from the Crab Spa and Alvinella sites at East Pacific Rise during the AT26-10 expedition, Jan. 2014 (Microbial Communities at Deep-Sea Vents project) (An Integrated Study of Energy Metabolism, Carbon Fixation, and Colonization Mechanisms in Chemosynthetic Microbial Communities at Deep-Sea Vents) | This dataset includes results from shipboard high-pressure incubations of\ndiffuse flow vent fluids collected from the Crab Spa (9.8398\\u00ba N,\n104.2913\\u00ba W) and Alvinella (9.8398\\u00ba N, 104.2915\\u00ba W) sites at\nEast Pacific Rise during the AT26-10 oceanographic expedition in January 2014.\nReported parameters include dates and time elapsed, flow rate, temperature,\npressure, and pH, and concentrations of NO3, NH4, H2, H2S, CH4.\n \nVent fluids used in shipboard incubations were corrected from diffuse flow\nvent sites at the East Pacific Rise (2503 m): Crab Spa (9.8398\\u00ba N,\n104.2913\\u00ba W) and Alvinella (9.8398\\u00ba N, 104.2915\\u00ba W) (see\ndescription in McNichol et al. [2016]). Fluids were collected using isobaric\ngas-tight samplers [Seewald et al., 2002] prior to their transfer to the\nshipboard continuous culture system [Foustoukos and Perez-Rodriguez, 2015].\nHere, high-pressure incubations (250 bars) were conducted at mesophilic (30\n\\u00baC) and thermophilic (50 \\u00baC) conditions to constrain the function\nand metabolic rates of denitrifying and DNRA microbial communities residing at\nCrab Spa and Alvinella, respectively. To enhance the activity of nitrate-\nrespiring anaerobic bacteria, an NO3- (5 mm) and H2(aq) (1.30 mM)-enriched\nmedium was introduced in the high-pressure incubations under strictly\nanaerobic conditions. Dissolved HCO3- (7.3 mm, 13C labeled) was used as added\ncarbon source. Vent fluids were introduced at a flow rate of 0.042 mL/min,\nwhile growth medium was added at a rate of 0.0042 mL/min. The two sets of\nexperiments were performed for 356 (Crab Spa) and 50 hours (Alvinella). Direct\ncell counts were conducted by staining cells with 0.1% acridine orange and\ncounting them with a fluorescence microscope. 15N/14N isotopic analysis of the\nNO3-, NH4+ and biomass were conducted with a Thermo Scientific Delta VPlus\nmass spectrometer and CE Instruments NA 2500 series elemental analyzer (EA).\n \nReferences:\n \nFoustoukos, D., and I. Perez-Rodriguez (2015), A continuous culture system for\nassessing microbial activities in the piezosphere, Applied and Environmental\nMicrobiology, 81(19), 6850-6856.\n \nMcNichol, J., S. P. Sylva, F. Thomas, C. D. Taylor, S. M. Sievert, and J. S.\nSeewald (2016), Assessing microbial processes in deep-sea hydrothermal systems\nby incubation at in situ temperature and pressure, Deep Sea Research Part I:\nOceanographic Research Papers, 115, 221-232.\n \nSeewald, J. S., K. W. Doherty, T. R. Hammar, and S. P. Liberatore (2002), A\nnew gas-tight isobaric sampler for hydrothermal fluids, Deep-Sea Research,\nPart I: Oceanographic Research Papers, 49(1), 189-196.\n\ncdm_data_type = Other\nVARIABLES:\ndescription (unitless)\n... (15 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_628993_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_628993/index.htmlTable | https://www.bco-dmo.org/dataset/628993
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_628993.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_628993&showErrors=false&email= | BCO-DMO | bcodmo_dataset_628993 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_812240 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_812240.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_812240/ | public | [M. jannaschii high/low H2: isotopes and fractionation factors] - Carbon isotopic compositions and fractionation factors of M. jannaschii in high and low hydrogen (H2) environments (Bioenergetic influences upon carbon flow in alkaliphilic sulfate-reducing microbial populations with relevance to the subsurface biosphere at the Lost City Hydrothermal Field) | Carbon isotopic compositions and fractionation factors of amino acids and squalenoid lipids in Methanocaldococcus jannaschii in high and low hydrogen (H2) environments.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nCulture_ID (unitless)\nd13C_ppt_Ala (D13 C Ppt Ala, parts per thousand (ppt))\nd13C_ppt_Gly (D13 C PPT GLY, parts per thousand (ppt))\nd13C_ppt_Thr (D13 C PPT THR, parts per thousand (ppt))\nd13C_ppt_Ser (D13 C Ppt Ser, parts per thousand (ppt))\nd13C_ppt_Val (D13 C Ppt Val, parts per thousand (ppt))\nd13C_ppt_Leu (D13 C Ppt Leu, parts per thousand (ppt))\nd13C_ppt_Iso (D13 C Ppt Iso, parts per thousand (ppt))\nd13C_ppt_Pro (D13 C Ppt Pro, parts per thousand (ppt))\nd13C_ppt_Glu (D13 C Ppt Glu, parts per thousand (ppt))\nd13C_ppt_Phe (D13 C Ppt Phe, parts per thousand (ppt))\nWeighted_Avg_d13C_THAA_ppt (Weighted Avg D13 C THAA Ppt, parts per thousand (ppt))\nd13C_ppt_Sq_3 (D13 C PPT SQ 3, parts per thousand (ppt))\nd13C_ppt_Sq_4 (D13 C PPT SQ 4, parts per thousand (ppt))\nd13C_ppt_Sq_5 (D13 C PPT SQ 5, parts per thousand (ppt))\nd13C_ppt_Sq_6 (D13 C PPT SQ 6, parts per thousand (ppt))\nWeighted_Avg_ppt_d13C_Sq (Weighted Avg Ppt D13 C Sq, parts per thousand (ppt))\nDIC_mM_To (DIC M M To, milliMolar (mM))\nDIC_mM_Tf (DIC M M Tf, milliMolar (mM))\nTFAA_uM_To (TFAA U M To, microMolar (uM))\nTFAA_uM_Tf (TFAA U M Tf, microMolar (uM))\nTHAA_uM_To (THAA U M To, microMolar (uM))\nTHAA_uM_Tf (THAA U M Tf, microMolar (uM))\nFractionation_factor_ppt_eCO2_CH4 (Fractionation Factor Ppt E CO2 CH4, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_B (Fractionation Factor Ppt E CO2 B, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_AA (Fractionation Factor Ppt E CO2 AA, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_squalenoids (Fractionation Factor Ppt E CO2 Squalenoids, parts per thousand (ppt))\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_812240_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_812240/index.htmlTable | https://www.bco-dmo.org/dataset/812240
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_812240.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_812240&showErrors=false&email= | BCO-DMO | bcodmo_dataset_812240 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750972 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750972.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_750972/ | public | [Micronekton AA CSIA ALOHA: Amino acid specific isotopes in micronekton] - Amino acid compound specific isotope values for micronekton from R/V Kilo Moana KM1109, KM1123, KM1407, KM1418, and other cruises in the Central North Pacific, Station ALOHA, Tropical Pacific, 2007-2014 (Collaborative Research: Isotopic insights to mercury in marine food webs and how it varies with ocean biogeochemistry) | This dataset contains amino acid compound specific concentrations in micronekton collected during R/V Kilo Moana cruises around the ALOHA observatory (KM1407, KM1418, KM2011, and a few other undocumented cruises). For more information about the ALOHA observatory see: http://aco-ssds.soest.hawaii.edu/. These data were published in Gloeckler et al (2018), Supporting Information file lno10762-sup-0001-suppinfo1.xlsx\n\ncdm_data_type = Other\nVARIABLES:\nSpeciesID (Species ID, unitless)\nFamilyID (Family ID, unitless)\nSpecimenID (Specimen ID, unitless)\nSample_site (unitless)\nYear (unitless)\nMonth (unitless)\nCruiseID (Cruise ID, unitless)\nn (individuals)\nLength_mm (millimeters)\nLength_Type (length)\nTissue_Type (sample_type)\ndelta15N_ppt_v_AIR (Delta15 N Ppt V AIR, permil)\ndelta13C_ppt_v_VPDB (Delta13 C Ppt V VPDB, permil)\nC_N_mol_mol (unitless)\nAlanine (unitless)\nGlycine (unitless)\nThreonine (unitless)\nSerine (unitless)\nValine (unitless)\nLeucine (unitless)\nIsoleucine (unitless)\nProline (unitless)\nAspartic_acid (unitless)\n... (7 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_750972_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_750972/index.htmlTable | https://www.bco-dmo.org/dataset/750972
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_750972.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_750972&showErrors=false&email= | BCO-DMO | bcodmo_dataset_750972 |