Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_781114/ | public | 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | RNA extractions were attempted from sediments at Sites C0014 and C0017 to selectively investigate the active microbial populations at these sites. This study was conducted to supplement the gene-based and metagenomic studies. However, the results from sequenced reverse transcribe 16S rRNA demonstrate the sensitivity of extraction and amplification to external nucleic acids and attest to the challenges in working with low biomass environmental samples. Inconsistencies between primersets and replicates make conclusions about the results of this RNA study extremely tenuous.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_ID (unitless)\nSample_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWater_depth (meters)\nTop_Depth (meters below seafloor)\nBottom_Depth (meters below seafloor)\nSediment_type (unitless)\nEstimated_Temp (degrees Celsius)\nNucleic_Acid_amplified (unitless)\nPrimer_Set_16S_rRNA (Primer Set 16 S R RNA, unitless)\nIllumina_dataset (unitless)\nNotes (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_781114_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_781114/index.htmlTable | https://www.bco-dmo.org/dataset/781114
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_781114.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_781114&showErrors=false&email= | BCO-DMO | bcodmo_dataset_781114 | ||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767141 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767141.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_767141/ | public | Limits of detection and qPCR efficiencies from cruise SAV 17-16 in the South Atlantic Bight aboard the R/V Savannah from 2011 to 2017 | This dataset contains the results of analyses related to ammonia oxidation rates, including oxidation rates of 15N supplied as ammonia, urea, 1,2 diamino ethane, 1,3 diamino propane, 1,4 diamino butane (putrescine), arginine and glutamate. Ancillary data including nutrient concentrations and the abundance of ammonia- and nitrite-oxidizing microorganisms are also reported. The samples analyzed to produce the dataset were collected off the coast of Georgia, USA. Most data were collected on one cruise in August 2017, incidental data from 2011, 2013 and 2016 are also reported.\n\ncdm_data_type = Other\nVARIABLES:\nqPCR_Parameters (Q PCR Parameters, unitless)\nProbe (unitless)\nForward_primer (unitless)\nReverse_primer (unitless)\nCycling_conditions (unitless)\nEfficiency (unitless)\nLimit_of_Detection_template (copies per microliter of template)\nLimit_of_Detection_sample (copies per liter of sample)\nNumber_plates_run (count)\nReference (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_767141_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_767141/index.htmlTable | https://www.bco-dmo.org/dataset/767141
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_767141.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_767141&showErrors=false&email= | BCO-DMO | bcodmo_dataset_767141 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658340.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658340 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658340/ | public | Sample numbers, barcode information, primer information and project name from bacteria samples collected in the Caribbean during 2013 (Contagious coral diseases project) | Sample numbers, barcode information, primer information and project name from bacteria samples collected in the Caribbean during 2013 (Contagious coral diseases project)\n\ncdm_data_type = Other\nVARIABLES:\nproject_name (unitless)\nlinker_primer_sequence (unitless)\nsample_id (unitless)\nbarcode_sequence (unitless)\nbarcode_name (unitless)\ndescription (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_658340_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658340/index.htmlTable | https://www.bco-dmo.org/dataset/658340
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658340.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658340&showErrors=false&email= | BCO-DMO | bcodmo_dataset_658340 |