Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813173.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813173 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813173.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_813173/ | public | [IODP360 - iTAG and metatranscriptome data] - Supplementary Table 4C: Statistics of reads retained through bioinformatic processing of iTAG data for the 11 samples and control samples and metatranscriptome data. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches) | Supplementary Table 4C: Metatranscriptome data summary for cellular activities presented and statistics on sequencing and removal of potential contaminant sequences: Statistics of reads retained through bioinformatic processing of iTAG data for the 11 samples and control samples and metatranscriptome data. Samples taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\niTAG_Raw (I TAG Raw, number of reads)\niTAG_Paired_QC (I TAG Paired QC, number of reads)\niTAG_Paired_Contmnt_Rem (I TAG Paired Contmnt Rem, number of reads)\niTAG_OTU (I TAG OTU, number of OTUs)\nMetatr_Raw (number of reads)\nMetatr_Paired_QC (number of reads)\nMetatr_Paired_Contmnt_Rem (number of reads)\nMetatr_Reads_Remaining (percentage (%))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_813173_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_813173_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_813173/index.htmlTable | https://www.bco-dmo.org/dataset/813173
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_813173.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_813173&showErrors=false&email= | BCO-DMO | bcodmo_dataset_813173 | ||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665311 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665311.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_665311/ | public | [Transcriptome statistics] - Transcriptome statistics from samples obtained on LMG1411 collected on the Gould (LMG1411) in the Western Antarctica Peninsula in 2014. (Polar Transcriptomes project) (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators) | Transcriptome statistics from samples obtained on LMG1411 collected on the Gould (LMG1411) in the Western Antarctica Peninsula in 2014. (Polar Transcriptomes project)\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nraw_sequence_reads (count)\ncontigs_num (count)\nisogroups_num (count)\ntranscriptome_size (Megabase)\nmean_contig_length (base pair)\nmax_contig_length (base pair)\nmin_contig_length (base pair)\nN50 (unitless)\ncontiguity (unitless)\nBUSCO_pcnt (percent)\nspliceosome_pcnt (percent)\nribosome_pcnt (percent)\nKEGG (count)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_665311_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_665311/index.htmlTable | https://www.bco-dmo.org/dataset/665311
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_665311.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_665311&showErrors=false&email= | BCO-DMO | bcodmo_dataset_665311 |