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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745527/ public [18S rRNA gene tag sequences from DNA and RNA] - NCBI accession metadata for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) Raw DNA and RNA V4 tag sequences include spatially and temporally distinct samples from coastal California.  Samples were collected in Niskin bottles with a CTD rosette at the San Pedro Ocean Time-series (SPOT) between April of 2013 and January of 2014.  This dataset contains sequence data accession numbers and metadata for the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP070577, BioProject: PRJNA311248).\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletpe2 (unitless)\nfilename2 (unitless)\ndepth2 (Depth, various)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_745527_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745527_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745527/index.htmlTable https://www.bco-dmo.org/dataset/745527 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745527.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745527&showErrors=false&email= BCO-DMO bcodmo_dataset_745527
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_705881 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_705881.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_705881/ public [Calcification Comparison] - Porites coral calcification responses to declining Ωar in a CO2 manipulation experiment in Palau versus the calcification responses observed in ten other studies of massive Porites corals (Toward Predicting the Impact of Ocean Acidification on Net Calcification by a Broad Range of Coral Reef Ecosystems: Identifying Patterns and Underlying Causes) Porites coral calcification responses to declining \\u03a9ar in a CO2 manipulation experiment in Palau versus the calcification responses observed in ten other studies of massive Porites corals.\n\ncdm_data_type = Other\nVARIABLES:\nreference (unitless)\nsite (unitless)\nstudy_type (unitless)\nomega_AR (unitless)\nstandardized_calcification_anom (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_705881_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_705881/index.htmlTable https://www.bco-dmo.org/dataset/705881 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_705881.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_705881&showErrors=false&email= BCO-DMO bcodmo_dataset_705881
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739077/ public [Community 16S rRNA gene sequences] - Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters) Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (Bio Project, unitless)\nstudy (unitless)\nsample_description (unitless)\nyear (unitless)\nnum_sequences (unitless)\nNCBI_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_739077_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739077/index.htmlTable https://www.bco-dmo.org/dataset/739077 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739077.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739077&showErrors=false&email= BCO-DMO bcodmo_dataset_739077
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713636.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713636 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713636.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_713636/ public [Florida Straights 2015 MOC1 Larval Fish Counts] - Counts of larval fishes collected by a 1m2 Multiple Opening Closing Net and Environmental Sampling System (MOCNESS; MOC1) in a subtropical, pelagic environment from R/V F.G. Walton Smith cruise WS15161 in June 2015 (Spatial variability of larval fish in relation to their prey and predator fields: Patterns and interactions from cm to 10s of km in a subtropical, pelagic environment) Counts of larval fishes collected by a 1m2 Multiple Opening Closing Net and Environmental Sampling System (MOCNESS; MOC1) in a subtropical, pelagic environment from R/V F.G. Walton Smith cruise WS15161 in June 2015.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (unitless)\ncruise_id (unitless)\nstudy (unitless)\nstation (unitless)\ntow_type (unitless)\nnet (unitless)\ndate (unitless)\ntime_open (unitless)\ntime_closed (unitless)\ndepth_open (Depth, meters (m))\ndepth_close (Depth, meters (m))\ntow_vol (cubic meters (m^3))\nlarval_fish_count (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nlat_end (Latitude, decimal degrees)\nlon_end (Longitude, decimal degrees)\ntime (ISO Date Time Start UTC, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_713636_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_713636_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_713636/index.htmlTable https://www.bco-dmo.org/dataset/713636 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_713636.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_713636&showErrors=false&email= BCO-DMO bcodmo_dataset_713636
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_526852 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_526852.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_526852/ public [JeDI] - Jellyfish Database Initiative: Global records on gelatinous zooplankton for the past 200 years, collected from global sources and literature (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea \t) The Jellyfish Database Initiative (JeDI) is a scientifically-coordinated global database dedicated to gelatinous zooplankton (members of the Cnidaria, Ctenophora and Thaliacea) and associated environmental data. The database holds 476,000 quantitative, categorical, presence-absence and presence only records of gelatinous zooplankton spanning the past four centuries (1790-2011) assembled from a variety of published and unpublished sources. Gelatinous zooplankton data are reported to species level, where identified, but taxonomic information on phylum, family and order are reported for all records. Other auxiliary metadata, such as physical, environmental and biometric information relating to the gelatinous zooplankton metadata, are included with each respective entry. JeDI has been developed and designed as an open access research tool for the scientific community to quantitatively define the global baseline of gelatinous zooplankton populations and to describe long-term and large-scale trends in gelatinous zooplankton populations and blooms. It has also been constructed as a future repository of datasets, thus allowing retrospective analyses of the baseline and trends in global gelatinous zooplankton populations to be conducted in the future.\n\ncdm_data_type = Other\nVARIABLES:\nproject_title (dimensionless)\nsub_project_title (dimensionless)\nowner_dataset (dimensionless)\ncontact (dimensionless)\nlocation_name (dimensionless)\ndate (variable)\nyear (unitless)\nmonth (MM)\nday (DD)\ntime_local (HH:MM:SS)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntaxon (dimensionless)\nrank_phylum (dimensionless)\n... (23 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_526852_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_526852_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_526852/index.htmlTable https://www.bco-dmo.org/dataset/526852 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_526852.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_526852&showErrors=false&email= BCO-DMO bcodmo_dataset_526852
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739882 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739882.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739882/ public [Kd averages] - Kd averages calculated by month from studies conducted in St. John, US Virgin Islands from 2014-2017. (Collaborative research: Ecology and functional biology of octocoral communities) Diffuse attenuation coefficient (Kd) for light in reef water of Great Lameshur Bay. These data describe how light is attenuated with depth in seawater in Lameshur Bay, with the coefficient calculated using standard procedures constrain (as described in the ms) by using surface light instead of immediately sub surface\n\ncdm_data_type = Other\nVARIABLES:\nYear (unitless)\nMonth (unitless)\nStudy_Number (unitless)\nKd (umol photons per square meter per second)\nKd_Mean (umol photons per square meter per second)\nKd_SE (umol photons per square meter per second)\nNote (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_739882_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739882/index.htmlTable https://www.bco-dmo.org/dataset/739882 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739882.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739882&showErrors=false&email= BCO-DMO bcodmo_dataset_739882
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745518/ public [Microbial eukaryotic focused metatranscriptome data] - Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community.  Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).  Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021.\\r\\n\\r\\nThese data were published in Hu et al. (2018).\n\ncdm_data_type = Other\nVARIABLES:\nSRA_run (unitless)\nSRA_run_link (unitless)\nSRA_study (unitless)\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nsample_name (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_745518_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745518/index.htmlTable https://www.bco-dmo.org/dataset/745518 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745518.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745518&showErrors=false&email= BCO-DMO bcodmo_dataset_745518
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_789136 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_789136/ public [Ocean Crust Microbiome Amplicon Metadata] - Synthesis of publicly-available sequence datasets of the 16S rRNA gene in environmental DNA extracted from seafloor and subseafloor samples from the Dorado outcrop, Lō'ihi Seamount, North Pond, and Juan de Fuca Ridge flank (Microbial activity in the crustal deep biosphere) To summarize crustal bacterial and archaeal taxa for this review, we synthesized publicly-available sequence datasets of the 16S rRNA gene in environmental DNA extracted from seafloor and subseafloor basalts generated using 454, Illumina and Ion Torrent amplicon platforms. These include seafloor basalts from the Dorado Outcrop and the L\\u014d'ihi Seamount in the Pacific Ocean and subseafloor basalts from North Pond on the western flank of the Mid-Atlantic Ridge and the Juan de Fuca Ridge flank in the northeastern Pacific Ocean. Datasets from rock colonization experiments conducted in the subseafloor at the Juan de Fuca Ridge flank site were also included, as well as microbial community surveys of the subseafloor crustal fluids from the anoxic Juan de Fuca site and the oxic North Pond site.\n\ncdm_data_type = Other\nVARIABLES:\nPlot_Order (unitless)\nSample_Name (unitless)\nSRA_Run (unitless)\nSRA_LibraryName (SRA Library Name, unitless)\nStudy_Nickname (unitless)\nSample_Type (unitless)\nTemp (Temperature, unitless)\nLocation (unitless)\ndepth2 (Depth, unitless)\nSequencer_Type (unitless)\nregion16S (Region16 S, unitless)\nPrimers (unitless)\nDNAextraction (unitless)\nDOI (unitless)\nSRA_Study (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_789136_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_789136/index.htmlTable https://www.bco-dmo.org/dataset/789136 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_789136.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_789136&showErrors=false&email= BCO-DMO bcodmo_dataset_789136
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769969 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769969.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_769969/ public [Oyster Cohort Genetics] - DNA microsatellite alleles for hatchery-produced oyster cohorts (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems) DNA microsatellite alleles for hatchery-produced oyster cohorts.\n\ncdm_data_type = Other\nVARIABLES:\nSTUDY (unitless)\nPOPULATION (unitless)\nSAMPLE_ID (unitless)\nCvi4313E_a (Cvi4313 E A, bp (base pairs))\nCvi4313E_b (Cvi4313 E B, bp (base pairs))\nRUCV73_a (bp (base pairs))\nRUCV73_b (bp (base pairs))\nRUCV74_a (bp (base pairs))\nRUCV74_b (bp (base pairs))\nCvi1i24b_a (bp (base pairs))\nCvi1i24b_b (bp (base pairs))\nCvi2i23_a (bp (base pairs))\nCvi2i23_b (bp (base pairs))\nRUCV1_a (bp (base pairs))\nRUCV1_b (bp (base pairs))\nCvi11_a (bp (base pairs))\nCvi11_b (bp (base pairs))\nRUCV66_a (bp (base pairs))\nRUCV66_b (bp (base pairs))\nCvi9_a (bp (base pairs))\nCvi9_b (bp (base pairs))\nCvi13_a (bp (base pairs))\nCvi13_b (bp (base pairs))\nCvi2k14_a (bp (base pairs))\nCvi2k14_b (bp (base pairs))\nCvi2j24_a (bp (base pairs))\nCvi2j24_b (bp (base pairs))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_769969_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_769969/index.htmlTable https://www.bco-dmo.org/dataset/769969 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_769969.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_769969&showErrors=false&email= BCO-DMO bcodmo_dataset_769969

 
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