BCO-DMO ERDDAP
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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_472032 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_472032.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_472032/ public 3A: Removal of organic carbon by natural bacterioplankton communities as a function of pCO2 from laboratory experiments between 2012 and 2016 Factors that affect the removal of organic carbon by heterotrophic bacterioplankton can impact the rate and magnitude of organic carbon loss in the ocean through the conversion of a portion of consumed organic carbon to CO2. Through enhanced rates of consumption, surface bacterioplankton communities can also reduce the amount of dissolved organic carbon (DOC) available for export from the surface ocean. The present study investigated the direct effects of elevated pCO2 on bacterioplankton removal of several forms of DOC ranging from glucose to complex phytoplankton exudate and lysate, and naturally occurring DOC. Elevated pCO2 (1000 \\u2013 1500 ppm) enhanced both the rate and magnitude of organic carbon removal by bacterioplankton communities compared to low (pre-industrial and ambient) pCO2 (250 \\u2013 ~400 ppm). The increased removal was largely due to enhanced respiration, rather than enhanced production of bacterioplankton biomass.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nbottle_number (unitless)\ndoc_addition (unitless)\ntarget_pCO2 (Target P CO2, parts per million (ppm))\ntime_point (unitless)\ntime_days (unitless)\ndate (unitless)\nbact_abun_x10e6_avg (cells per milliliter)\nbact_abun_x10e6_stderr (cells per milliliter)\nbact_abun_x10e6_stdev (cells per milliliter)\ntoc_avg (micromoles per liter (uM))\ntoc_stderr (micromoles per liter (uM))\ntoc_stdev (micromoles per liter (uM))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_472032_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_472032/index.htmlTable https://www.bco-dmo.org/dataset/472032 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_472032.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_472032&showErrors=false&email= BCO-DMO bcodmo_dataset_472032
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_518427 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_518427.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_518427/ public Experimental results: Bloom in Bottle (BIB) experiments: culture studies of the effect of Si and N stress on diatoms of the Santa Barbara Channel (SBDOM project, SBC LTER) Culture studies of diatoms that dominate spring blooms in the Santa Barbara Channel were used to examine the effects of N and Si stress on the magnitude of production and the chemical composition of DOM. Species cultured were: Skeletonema costatum (CCMP 1332), Chaetoceros socialis (CCMP 172), Thalassiosira weissflogii (CCMP 1051), and Odontella aurita (CCMP 595).\n\ncdm_data_type = Other\nVARIABLES:\nspecies (text)\ndate_start (unitless)\ndate_end (unitless)\ntreatment (text)\ntime_point (alphanumeric)\nnominal_hrs (integer)\nreplicate (1 or 2)\nchl (micrograms per Liter (ug L-1))\nphyt_abun (cells per milliliter (cells/mL))\nphyt_abun_sd (cells per milliliter (cells/mL))\nNO3 (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))\nSi (Mass Concentration Of Silicate In Sea Water, micromolar (uM))\nSi_bio (Mass Concentration Of Silicate In Sea Water, micromolar (uM))\nprim_prod (micromoles Carbon per Liter per day (uMol C L-1 d-1))\nER (micromoles Carbon per Liter per day (uMol C L-1 d-1))\nPOC (Particulate Organic Carbon, micromolar (uM))\nDOC (micromolar (uM))\nDOC_sd (micromolar (uM))\nTEP ((uXeq L-1))\nTEP_sd ((uXeq L-1))\nBP (picomoles per Liter per hour (pmol L-1 h-1))\nBP_sd (picomoles per Liter per hour (pmol L-1 h-1))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_518427_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_518427/index.htmlTable https://www.bco-dmo.org/dataset/518427 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_518427.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_518427&showErrors=false&email= BCO-DMO bcodmo_dataset_518427
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_518508 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_518508.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_518508/ public Experimental results: Remineralization experiments to assess the ability of natural assemblages of bacteria to utilize DOM produced under Si and N limitation (SBDOM project, SBC LTER project) Culture studies of diatoms that dominate spring blooms in the Santa Barbara Channel were used to examine the effects of N and Si stress on the magnitude of production and the chemical composition of DOM (see the BIB Experiments dataset). The ability of natural assemblages of bacteria to utilize DOM produced under Si and N limitation was then assessed using remineralization experiments. Species examined in the remineralization experiments include: Skeletonema marinoi, Chaetoceros socialis, Thalassiosira weissflogii, and Odontella aurita.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (text)\ntreatment (text)\nreplicate (integer)\ntime_point (integer)\ndays_elapsed (number)\nDOC (micromoles per Liter (umol/L))\nDOC_sd (micromoles per Liter (umol/L))\nTDN (micromoles per Liter (umol/L))\nTDN_sd (micromoles per Liter (umol/L))\nNO3_NO2 (micromoles per Liter (umol/L))\nNH4 (micromoles per Liter (umol/L))\nPO4 (Mass Concentration Of Phosphate In Sea Water, micromoles per Liter (umol/L))\ndSi (D Si, micromoles per Liter (umol/L))\nbact_abund_FCM (cells per Liter (cells/L))\nbact_abund_DAPI (cells per Liter (cells/L))\nbact_abund_DAPI_sd (cells per Liter (cells/L))\nbact_prod (picomoles Leucine per Liter per hour (pmol Leu/L/hr))\nbact_prod_sd (picomoles Leucine per Liter per hour (pmol Leu/L/hr))\nspecifc_growth_rate (per day)\nbact_growth_eff (unitless)\nDNA_sampled (yes or no)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_518508_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_518508/index.htmlTable https://www.bco-dmo.org/dataset/518508 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_518508.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_518508&showErrors=false&email= BCO-DMO bcodmo_dataset_518508
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701987 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701987.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_701987/ public Green crab size based predation trials conducted in laboratory mesocosms at Romberg Tiburon Center, Tiburon, CA in 2015 Green crab size based predation trials conducted in laboratory mesocosms at Romberg Tiburon Center, Tiburon, CA in 2015.\n\ncdm_data_type = Other\nVARIABLES:\ntrial_number (unitless)\ntime_point (unitless)\ndate (unitless)\ntank_number (unitless)\ntub_number (unitless)\npredator_size (millimeters (mm))\norigin (unitless)\ntime2 (Time, unitless)\nprey_found (unitless)\nprey_size_1 (millimeters (mm))\nprey_size_2 (millimeters (mm))\nprey_size_3 (millimeters (mm))\nprey_size_4 (millimeters (mm))\nprey_size_5 (millimeters (mm))\nnotes (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_701987_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_701987/index.htmlTable https://www.bco-dmo.org/dataset/701987 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_701987.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_701987&showErrors=false&email= BCO-DMO bcodmo_dataset_701987
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762443.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762443 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762443.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762443/ public Metagenomic, metatranscriptomics and 16S rRNA gene sequence data from diel sampling at Groves Creek Marsh, Skidaway Island, GA during July 2014 Groves Creek Marsh (31.972\\u00b0 N, 81.028\\u00b0 W), a temperate salt marsh fringing Skidaway Island, GA served as the field site for this study. During July 16-17, 2014, samples were collected every two hours and four minutes to evenly sample across two tidal cycles and one diurnal cycle.\n\ncdm_data_type = Other\nVARIABLES:\nTime_point (unitless)\ntime (seconds since 1970-01-01T00:00:00Z)\nTemperature (degrees Celsius)\ndepth (m)\nSalinity (Sea Water Practical Salinity, parts per thousand (ppt))\nCell_Density (cells per mililiter (cells/mL))\nBacterial_Production (milimole per hour (mmol/h))\nDOC (mm)\nTDN (mm)\nDOC_TDN (unitless)\na254_DOC (unitless)\nLignin (mg 1/ mg OC)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_762443_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762443/index.htmlTable https://www.bco-dmo.org/dataset/762443 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762443.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762443&showErrors=false&email= BCO-DMO bcodmo_dataset_762443
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735583 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735583.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_735583/ public Net calcification, gross calcification, and linear extension rates of fragments of 4 species of coral over a 93-day ocean acidification and warming laboratory experiment This dataset includes measurements of calcification, linear extension, and surface area for four species of Caribbean reef-building corals (Siderastrea siderea, Pseudodiploria strigosa, Porites astreoides, and Undaria tenuifolia) after a 93-day ocean acidification (280-3200 \\u03bcatm) and warming (28\\u00b0C and 31\\u00b0C) experiment. Both calcification, measured using a buoyant weight method, and surface area, quantified using image processing software on photos taken of each fragment, were assess every 30 days throughout the experiment. Linear extension was quantified at the end of the experiment for total linear growth.\n\ncdm_data_type = Other\nVARIABLES:\nreefzone (unitless)\nspecies_code (unitless)\ncolony (unitless)\ncoral (unitless)\ntank (unitless)\ntreatment (unitless)\npCO2_label (P CO2 Label, unitless)\npCO2_target (P CO2 Target, micro-atmospheres)\ntemp_target (degrees Celsius)\npCO2 (P CO2, micro-atmospheres)\ntemp (Temperature, degrees Celsius)\nsurface_area (square centimeters)\nlinear_extension (millimeters/day (mm day-1))\ntime_point (unitless)\ncalc_rate (milligrams/centimeter^2/day (mg cm-2 day-1))\ncalc_gross (milligrams/centimeter^2/day (mg cm-2 day-1))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_735583_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_735583/index.htmlTable https://www.bco-dmo.org/dataset/735583 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_735583.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_735583&showErrors=false&email= BCO-DMO bcodmo_dataset_735583
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_754885/ public Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments Incubation experiments were conducted in the dark or using a dark/light cycle. Incubations conducted in the dark alone are classified as \\microbial, and incubations using a dark/light cycle are classified as \\coupled\\.\n\ncdm_data_type = Other\nVARIABLES:\nincubation_type (unitless)\nsite_type (unitless)\ntime_point (unitless)\ndays (days)\nhours (hours)\nExposure (hours)\nDose (MJ/m2)\nIrradiance (W/m2)\nDOC_mg_L (mg/L)\nDOC_mM (DOC M M, mM)\nFuc (nanomoles per liter (nmol/L))\nRha (nanomoles per liter (nmol/L))\nAra (nanomoles per liter (nmol/L))\nGal (nanomoles per liter (nmol/L))\nGlu (nanomoles per liter (nmol/L))\nMan (nanomoles per liter (nmol/L))\nXyl (nanomoles per liter (nmol/L))\nD_Asx (nanomoles per liter (nmol/L))\nL_Asx (nanomoles per liter (nmol/L))\nD_Glx (nanomoles per liter (nmol/L))\nL_Glx (nanomoles per liter (nmol/L))\nD_Ser (nanomoles per liter (nmol/L))\nL_Ser (nanomoles per liter (nmol/L))\nD_His (nanomoles per liter (nmol/L))\nL_His (nanomoles per liter (nmol/L))\n... (69 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_754885_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_754885/index.htmlTable https://www.bco-dmo.org/dataset/754885 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_754885.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_754885&showErrors=false&email= BCO-DMO bcodmo_dataset_754885

 
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