BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
griddap Subset tabledap Make A Graph wms files Accessible Title Summary FGDC ISO 19115 Info Background Info RSS Email Institution Dataset ID
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_780926 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_780926.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_780926/ public [16S rRNA gene from DNA] - 16S rRNA gene (from DNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 (An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments) The purpose of this dataset was to investigate taxonomic changes via the 16S rRNA gene from extractable DNA across 45 meters of recovered core. The temperature gradient in this section of the dynamic Iheya North Hydrothermal system was estimated to be ~3C/m. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_ID (unitless)\nIODP_Sample_Number (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWater_depth (meters)\nTop_Depth (meters below seafloor)\nBottom_Depth (meters below seafloor)\nSediment_type (unitless)\nEstimated_Temp (degrees Celsius)\nMGRAST_Accession_ID (unitless)\nNotes (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_780926_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_780926_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_780926/index.htmlTable https://www.bco-dmo.org/dataset/780926 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_780926.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_780926&showErrors=false&email= BCO-DMO bcodmo_dataset_780926
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781114.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_781114/ public [16S rRNA gene from RNA] - 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 (An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments) RNA extractions were attempted from sediments at Sites C0014 and C0017 to selectively investigate the active microbial populations at these sites. This study was conducted to supplement the gene-based and metagenomic studies. However, the results from sequenced reverse transcribe 16S rRNA demonstrate the sensitivity of extraction and amplification to external nucleic acids and attest to the challenges in working with low biomass environmental samples. Inconsistencies between primersets and replicates make conclusions about the results of this RNA study extremely tenuous.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_ID (unitless)\nSample_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWater_depth (meters)\nTop_Depth (meters below seafloor)\nBottom_Depth (meters below seafloor)\nSediment_type (unitless)\nEstimated_Temp (degrees Celsius)\nNucleic_Acid_amplified (unitless)\nPrimer_Set_16S_rRNA (Primer Set 16 S R RNA, unitless)\nIllumina_dataset (unitless)\nNotes (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_781114_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_781114_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_781114/index.htmlTable https://www.bco-dmo.org/dataset/781114 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_781114.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_781114&showErrors=false&email= BCO-DMO bcodmo_dataset_781114
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2348 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2348.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2348/ public [bacteria_ice] - Ice core bacteria data from RVIB Nathaniel B. Palmerand ARSV Laurence M. Gould cruises NBP0104, LMG0106, NBP0204,and LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project; Sea Ice Microbes project) (U.S. GLOBEC Southern Ocean) Ice core bacteria data from RVIB Nathaniel B. Palmerand ARSV Laurence M. Gould cruises NBP0104, LMG0106, NBP0204,and LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project; Sea Ice Microbes project)\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid\nyear\nstation\nevent\nlatitude (degrees_north)\nlongitude (degrees_east)\nmonth_gmt (GMT)\nday_gmt (GMT)\nyrday_gmt (GMT)\ncore_no\nsect_top_depth (decimal meters)\nsect_bot_depth (decimal meters)\nbact_abun (cells/meter3)\nbact_biomass_C (milligrams C/meter3)\nchl_a_ugm (Concentration Of Chlorophyll In Sea Water, micrograms/liter)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_2348_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2348_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2348/index.htmlTable https://www.bco-dmo.org/dataset/2348 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2348.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2348&showErrors=false&email= BCO-DMO bcodmo_dataset_2348
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700279/ public [Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files] - Metabarcoding zooplankton at station ALOHA: Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU (Plankton Population Genetics project) (Basin-scale genetics of marine zooplankton) Metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1-meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa.  All results derive from analyses in mothur v1.36.1 (Schloss et al. 2009, Kozich et al. 2013).\n\ncdm_data_type = Other\nVARIABLES:\nanalysis_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nanalysis_description (unitless)\nOTU_ID (unitless)\nFA3_N1_SF1 (per OTU)\nFA3_N1_SF2 (per OTU)\nFA3_N1_SF3 (per OTU)\nFA3_N2_SF1 (per OTU)\nFA3_N2_SF2 (per OTU)\nFA3_N2_SF3 (per OTU)\nFA3_N3_SF1 (per OTU)\nFA3_N3_SF2 (per OTU)\nFA3_N3_SF3 (per OTU)\nFA3_N4_SF1 (per OTU)\nFA3_N4_SF2 (per OTU)\nFA3_N4_SF3 (per OTU)\n... (68 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_700279_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_700279_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700279/index.htmlTable https://www.bco-dmo.org/dataset/700279 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700279.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700279&showErrors=false&email= BCO-DMO bcodmo_dataset_700279
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781137.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781137 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_781137.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_781137/ public [Metagenome] - Metagenomic data from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 (An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments) The purpose these metagenomic data was to capture a distinct changeover of microbial assemblages between the mesophilic horizons above 10 mbsf and the hottest (55C) hydrothermal clay horizon. In this section of the dynamic Iheya North Hydrothermal system, the temperature gradient was estimated to be ~3C/m. These metagenomes provide functional evidence to this model, demonstrating that molecular signals represent a responsive microbial community to the increasingly demanding environmental conditions.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_ID (unitless)\nSample_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nWater_depth (meters)\nTop_Depth (meters below seafloor)\nBottom_Depth (meters below seafloor)\nSediment_type (unitless)\nEstimated_Temp (degrees Celsius)\nMGRAST_Name (unitless)\nMGRAST_ID (unitless)\nNotes (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_781137_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_781137_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_781137/index.htmlTable https://www.bco-dmo.org/dataset/781137 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_781137.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_781137&showErrors=false&email= BCO-DMO bcodmo_dataset_781137

 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact