Accessing BCO-DMO data
Brought to you by BCO-DMO
|
|
BCO-DMO ERDDAP
Accessing BCO-DMO data |
log in
Brought to you by BCO-DMO |
| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log in | [Sequence metadata hatchery and restored reef oysters 2017-2020] - Sequence metadata for all sampled oysters from an experimental oyster reef restoration in Ninigret Pond, Rhode Island (USA) in 2017-2020 (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems) | This dataset contains sequencing metadata for all 803 eastern oysters (Crassostrea virginica, urn:lsid:marinespecies.org:taxname:140657) sampled for genetic analysis and retained after SNP quality filtering as part of a multi-year oyster reef restoration experiment in Ninigret Pond, Rhode Island, USA. Oysters were sourced from four commercial hatcheries along the U.S. Atlantic coast (Maine, Massachusetts, New York, and Virginia) and sampled from hatchery source collections pre-experiment and from experimental restored reefs over time. Metadata are drawn from the NCBI Sequence Read Archive (BioProject PRJNA1280068), where the associated raw fastq files are publicly archived, and include sample identifiers, collection details, sequencing instrument/platform information, and SRA accession numbers linking each individual to its raw sequencing data. The primary genetic cluster assignment for each individual broadly correspond to the four commercial hatchery sources as described in the related individual genetic assignments dataset. A flag column indicates individuals excluded from downstream reef-level analyses for the associated manuscript, including those from reefs determined to have started as single-source reefs in fall 2018 and a small subset of individuals sampled outside the primary fall 2018 and fall 2020 time points.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\ntissue (unitless)\nacc (unitless)\nassay_type (unitless)\nbatch (unitless)\nbioproject (unitless)\nbiosample (unitless)\nbiosamplemodel (unitless)\nSRS (unitless)\ndatastore_filetype (unitless)\ndatastore_provider (unitless)\ndatastore_region (unitless)\nexperiment (unitless)\ngenotyped_individual (unitless)\n... (17 more variables)\n | BCO-DMO | bcodmo_dataset_1003894_v1 |