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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log in | [Genetic analyses and microsatellite characterization of new zooxanthellae species for Butler et al. (2023)] - Genetic analyses and microsatellite characterization for formal recognition of new species of host-generalist species of dinoflagellate (Cladocopium, Symbiodiniaceae) mutualistic with Indo-Pacific reef corals collected from 2003 through 2015 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses) | These genetic data were used to justify the formal characterization of new species of ‘ecological generalists' zooxanthellae, the dinoflagellate symbionts living in the tissues of numerous marine animals including corals. Reef-building corals are dependent on endosymbiotic dinoflagellates (Family: Symbiodiniaceae) for their survival and growth but there is almost no taxonomy available for coral symbionts thus limiting research on them. These data include the sequences of genes originating from the nuclear genome, the mitochondrial genome as well as from the chloroplast genome. These sequences were analyzed independently and the resulting phylogenies from these analyses used to test for reciprocal monophyly, a way to verify the evolutionary divergence of two populations. Additionally, microsatellites were analyzed to test boundaries to genetic recombination indicated by the phylogenetic data.\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nSpecies (unitless)\nAphia_ID (unitless)\nSample_Origin (unitless)\nC1_22 (base pairs)\nC1_22_2 (base pairs)\nC1_25 (base pairs)\nC1_25_2 (base pairs)\nC1_24 (base pairs)\nC1_24_2 (base pairs)\nC1_05 (base pairs)\nC1_05_2 (base pairs)\nC1_16 (base pairs)\nC1_16_2 (base pairs)\nZ1_Spl_1 (base pairs)\nZ1_Spl_1_2 (base pairs)\nz78 (base pairs)\nz78_2 (base pairs)\n | BCO-DMO | bcodmo_dataset_957700_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3095 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3095.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3095/ | public | [phytoplankton taxonomy] - Time-Series of Phytoplankton Taxonomy and Density collected by the CARIACO Ocean Time-Series Project from November 1995 to January 2017 (CARIACO Ocean Time-Series Program) | The CARIACO Ocean Time-Series Program (formerly known as CArbon Retention In A Colored Ocean) started on November 1995 (CAR-001) and ended on January 2017 (CAR-232). Monthly cruises were conducted to the CARIACO station (10.50\\u00b0 N, 64.67\\u00b0 W) onboard the R/V Hermano Gin\\u00e9s of the Fundaci\\u00f3n La Salle de Ciencias Naturales de Venezuela. The program studied the relationship between surface primary production, physical forcing variables like the wind, and the settling flux of particulate carbon in the Cariaco Basin. This depression, located on the continental shelf of Venezuela, shows marked seasonal and interannual variation in hydrographic properties and primary production (carbon fixation rates by photosynthesis of planktonic algae).\\r\\n\\r\\nOne of the monthly measurements taken by the program was water sampling at different depths for phytoplankton taxonomy (occurrence and density). Those water samples were collected with Niskin bottles during the first CTD Cast of the morning at 1, 7, 25, 35, 75, and 100 m depth. Phytoplankton taxonomy and density was determined at each depth at the level of species or genera. Values of zero are real and denote that a specific species was not found at that cruise/depth.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\nCruise_ID_2 (unitless)\nLeg (unitless)\nCast (unitless)\nDay_local (unitless)\nMonth_local (unitless)\nYear_local (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nTime_start_local (unitless)\nTime_end_local (unitless)\nDatetime_local (unitless)\ntime (Datetime UTC, seconds since 1970-01-01T00:00:00Z)\nSpeciesNameOriginal (Species Name Original, unitless)\nSpeciesNameCleaned (Species Name Cleaned, unitless)\n... (11 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3095_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3095/index.htmlTable | https://www.bco-dmo.org/dataset/3095
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3095.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3095&showErrors=false&email= | BCO-DMO | bcodmo_dataset_3095 | ||||
| log in | [Pocillopora species ID from Recharge project] - Differential effects of nutrients and consumer pressure on sympatric cryptic coral species (Pocillopora spp.) in Moorea, French Polynesia sampled in November 2021. (Collaborative research: Coral community resilience: testing the role of hidden diversity in pocilloporid corals at Moorea) | Cryptic species (evolutionarily distinct lineages that do not align with morphologically defined species) are being increasingly discovered but are poorly integrated into ecological theory. In particular, we still lack a useful understanding of if and how cryptic species differ in ways that affect community recovery from disturbances and responses to anthropogenic stressors, such as the removal of consumers and pollution from nutrients. \n\nOn coral reefs, nutrient pollution increases the growth of macroalgae that displaces corals. Reductions in herbivorous fishes reduce the suppression of macroalgae, while reductions in coralivorous fishes reduce predation on corals. An unresolved question is if and how cryptic coral species respond differently to these impacts, thereby differing in their ability to influence coral community dynamics and maintain coral dominance. Therefore, we assessed how the response of cryptic Pocillopora species over a period of three years following a simulated disturbance from a cyclone depended on the experimental reduction of fish consumer pressure and nutrient addition. After three years, five morphologically cryptic, but genetically distinct, Pocillopora species recruited to the reef. However, recruitment was dominated by two species: P. tuahiniensis (46%) and P. meandrina (43%). \n\nUnder ambient conditions, recruitment of P. tuahiniensis and P. meandrina was similar, but experimentally reducing consumer pressure increased recruitment of P. tuahiniensis by up to 73% and reduced recruitment of P. meandrina by up to 49%. In both species, nutrient enrichment increased recruitment and colony growth rates equally, but colonies of P. tuahiniensis grew faster, and were up to 25% larger after three years, than those of P. meandrina, and growth was unaffected by reduced consumer pressure. Predation by excavating corallivorous fish was higher for P. meandrina than for P. tuahiniensis, especially under nutrient enrichment. In contrast, polyp extension (an indicator of elevated heterotrophic feeding as well as susceptibility and attractiveness to corallivores) was lower for P. meandrina than for P. tuahiniensis, especially under low to medium consumer pressure. Overall, we uncovered ecological differences in the response of morphologically cryptic foundation species to two pervasive stressors on coral reefs. \n\nOur results demonstrate how cryptic species respond differently to key anthropogenic stressors, which may contribute to response diversity that can support ecological resilience or increase extinction risk.\n\ncdm_data_type = Other\nVARIABLES:\nlatitude (degrees_north)\n... (14 more variables)\n | BCO-DMO | bcodmo_dataset_964151_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_931469_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_931469_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_931469_v1/ | public | [Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC)] - Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC) collected during West Florida Coastal Surveys of Seagrass from Feb 2022 to Oct 2023 (Collaborative Research: VIDA Seagrass: Viral Infection Dynamics Among Seagrass) | This dataset includes Sanger sequence references for 40 Thalassia testudinum samples collected during systematic seagrass surveys from multiple Florida sites, including Terra Ceia Aquatic Preserve, Tampa Bay seagrass sites S1T5 and S3T8 (Lassing Park), Panacea located in the Florida Panhandle, and Florida Keys sites including Bush Key, Garden Key, Marquesas Key, and Key West.\nWe investigated potexvirus distribution in seagrasses using a degenerate reverse transcription polymerase chain reaction (RT-PCR) assay originally designed to capture potexvirus diversity in terrestrial plants. The assay, which implements Potex-5 and Potex-2RC primers, successfully amplified a 584 nt RNA-dependent RNA polymerase (RdRp) fragment from TVX-infected seagrasses. Following validation, we screened 74 opportunistically collected, apparently healthy seagrass samples for potexviruses using this RT-PCR assay.\nPotexvirus PCR products were successfully generated from Thalassia testudinum samples. Sequences from these products are deposited in NCBI GenBank under the accession numbers OR827692-OR827705, OR854648, OR863396, OR879052-OR879056, and PP430548-PP430571.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nregion (unitless)\nsite (unitless)\ndate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsample_host (unitless)\nAphia_id (unitless)\nGenbank_accession (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_931469_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_931469_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_931469_v1/index.htmlTable | https://www.bco-dmo.org/dataset/931469
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_931469_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_931469_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_931469_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_770626 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_770626.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_770626/ | public | [Seagrass fauna traits] - Trait data for epibenthic and infaunal seagrass macrofauna in North Carolina, USA from peer-reviewed literature and web-based identification guides (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms) | Trait data for epibenthic and infaunal seagrass macrofauna in North Carolina, USA from peer-reviewed literature and web-based identification guides.\n\ncdm_data_type = Other\nVARIABLES:\nTaxon_name (unitless)\nAphiaID (Aphia ID, unitless)\nPrimary_trophic_mode (unitless)\nRefernece_code_for_primary_trophic_mode (unitless)\nMicrohabitat_use (unitless)\nReference_code_for_microhabitat_use (unitless)\nReproductive_mode (unitless)\nReference_code_for_reproductive_mode (unitless)\nLarval_development (unitless)\nReference_code_for_larval_development (unitless)\nPost_settlement_mobility (unitless)\nReference_code_for_post_settlement_mobility (unitless)\nMaximum_body_size (millimeters(mm))\nReference_code_for_maximum_body_size (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_770626/index.htmlTable | https://www.bco-dmo.org/dataset/770626
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_770626.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_770626&showErrors=false&email= | BCO-DMO | bcodmo_dataset_770626 |