Accessing BCO-DMO data
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_905357_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_905357_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_905357_v1/ | public | [pH internal Consistency Experiment: Measured pH and nutrients] - Measured pH and nutrient data acquired during the pH internal consistency experiment. (Improving Accuracy and Precision of Marine Inorganic Carbon Measurements) | These data include the measured pHt, total alkalinity, dissolved inorganic carbon, raw pHt absorbance, and calculated pHt of 25 batches of seawater as a function of temperature, salinity, and pCO2. These data were used to evaluate the internal consistency of 120 different possible combinations of CO2 system constants. \n\nThe marine inorganic carbon system can be calculated with two measured parameters due to thermodynamic relationships. However, there are many different parameterizations for the required constants and the most accurate or best is not known. These data were used to evaluate the constants and make recommendations for which constants to use, and how to perform CO2 system calculations.\n\ncdm_data_type = Other\nVARIABLES:\nBatch (unitless)\nPractical_Salinity (unitless)\nTemp (degrees Celsius (˚C))\nmeas_pHt (unitless)\npHt_std_err (unitless)\nmeas_TA (micromoles per kilogram (µmol/kg))\nTA_std (micromoles per kilogram (µmol/kg))\nmeas_DIC (micromoles per kilogram (µmol/kg))\nDIC_std (micromoles per kilogram (µmol/kg))\nequilibrator_pCO2 (microatmospheres (µatm))\nPO4 (micromoles per kilogram (µmol/kg))\nPO4_stdev (micromoles per kilogram (µmol/kg))\nSi (micromoles per kilogram (µmol/kg))\nSi_stdev (micromoles per kilogram (µmol/kg))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_905357_v1/index.htmlTable | https://www.bco-dmo.org/dataset/905357
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_905357_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_905357_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_905357_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_905235_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_905235_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_905235_v1/ | public | [pH internal Consistency Experiment: Raw pH Data] - Raw pH data acquired during the pH internal consistency experiment. (Improving Accuracy and Precision of Marine Inorganic Carbon Measurements) | These data include the measured pHt, total alkalinity, dissolved inorganic carbon, raw pHt absorbance, and calculated pHt of 25 batches of seawater as a function of temperature, salinity, and pCO2. These data were used to evaluate the internal consistency of 120 different possible combinations of CO2 system constants.\n\nThe marine inorganic carbon system can be calculated with two measured parameters due to thermodynamic relationships. However, there are many different parameterizations for the required constants and the most accurate or best is not known. These data were used to evaluate the constants and make recommendations for which constants to use, and how to perform CO2 system calculations.\n\ncdm_data_type = Other\nVARIABLES:\nBatch (unitless)\nBottle (unitless)\nRep (unitless)\nPractical_Salinity (unitless)\nCalculated_Temperature (Degrees Celsius (˚C))\nMeasured_Temperature (Degrees Celsius (˚C))\nA434 (Absorbance units (AU))\nA578 (Absorbance units (AU))\nA730 (Absorbance units (AU))\nA488 (Absorbance units (AU))\nR (Absorbance units (AU))\nraw_pHt (unitless)\nflag (unitless)\nflag_reason (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_905235_v1/index.htmlTable | https://www.bco-dmo.org/dataset/905235
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_905235_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_905235_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_905235_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_905278_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_905278_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_905278_v1/ | public | [pH internal Consistency Experiment: TA & DIC] - (Improving Accuracy and Precision of Marine Inorganic Carbon Measurements) | These data include the measured pHt, total alkalinity, dissolved inorganic carbon, raw pHt absorbance, and calculated pHt of 25 batches of seawater as a function of temperature, salinity, and pCO2. These data were used to evaluate the internal consistency of 120 different possible combinations of CO2 system constants. \n\nThe marine inorganic carbon system can be calculated with two measured parameters due to thermodynamic relationships. However, there are many different parameterizations for the required constants and the most accurate or best is not known. These data were used to evaluate the constants and make recommendations for which constants to use, and how to perform CO2 system calculations.\n\ncdm_data_type = Other\nVARIABLES:\nBatch (unitless)\nPractical_Salinity (unitless)\nmeas_TA (micromoles per kilogram (µmol/kg))\nmeas_DIC (micromoles per kilogram (µmol/kg))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_905278_v1/index.htmlTable | https://www.bco-dmo.org/dataset/905278
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_905278_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_905278_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_905278_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918220_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918220_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918220_v1/ | public | [qPCR assays] - Results from qPCR assays to quantify the abundance and photochemical performance of symbionts relative to coral cells in three coral species collected from colonies in southeast Florida in April and October 2019 before, during, and after heat stress tests (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications) | This dataset contains results from assays to quantify the abundance and photochemical performance of Breviolum, Cladocopium, and Durusdinium symbionts relative to coral cells in Montastraea cavernosa, Orbicella faveolata, and Siderastrea siderea corals collected from colonies in southeast Florida in April 2019 and in October 2019, before, during and after aquarium-based experimental heat stress tests. Bulk genomic DNA was extracted from tissue scrapings taken from 2.5cm diameter cores of corals and was used as a template for symbiont genus-specific qPCR assays. The resulting CT values were used to calculate the relative abundance of each symbiont genus within each coral core over the course of the heat stress. The photochemical efficiency of each coral core was also measured periodically throughout heat stress tests using an imaging pulse amplitude modulated (I-PAM) fluorometer. The publication based on these data is Buzzoni, et al. (2023) (DOI: 10.1007/s00338-023-02428-x).\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nTreatment (unitless)\nCore (unitless)\nCollection_Latitude (degrees_north)\nlongitude (Collection_longitude, degrees_east)\nTimepoint (unitless)\nSym_Host (unitless)\nY2 (unitless)\nPropD (unitless)\nBatch (unitless)\nDate (unitless)\nColony (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918220_v1/index.htmlTable | https://www.bco-dmo.org/dataset/918220
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918220_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918220_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_918220_v1 | |||||
| log in | [RECHARGE 2018 - 2020 Microbiome Data] - Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 (Collaborative Research: Tipping points in coral reefs and their associated microbiomes: interactive effects of herbivory, nutrient enrichment, and temperature) | This dataset contains the complete sample information for the 16S rRNA gene V4 region amplicon sequencing data associated with the NCBI SRA accession from BioProject PRJNA994532. All raw sequencing data can be found at this publicly available NCBI SRA BioProject. \n\nThe associated samples were collected from an in situ coral manipulative experiment in Moorea, French Polynesia between 2018-2020 from Acropora retusa, Porites lobata, and Pocillopora spp. Data collection was a multi-university collaborative effort between the Vega Thurber Laboratory, at Oregon State University during the time of the experiment, and the Burkepile Community Ecology Laboratory at UC Santa Barbara. The experiment, conducted on the fore reef on the north shore of the island, evaluated the interaction of consumer pressure level (termed \"Herbivory\" in the dataset and in Vompe et al., 2023) and nutrient enrichment on coral microbiome composition and host success. The experiment also captured two severe and sequential marine heatwaves in 2019 and 2020. This experiment aimed to evaluate whether managing local inputs, including water column nutrient levels and fishing regimes, interacts with heat stress to affect coral success. Coral microbiomes were sampled as these microbial communities are known to interact with host health during heat stress. The data herein correspond to the microbiomes of the sampled corals.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nDate_MonthYear (unitless)\nCoral_Code (unitless)\nHerbivory (unitless)\nNutrients (unitless)\nPlot (unitless)\nTag (unitless)\nBatch (unitless)\nRun (unitless)\nAssayType (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\n... (32 more variables)\n | BCO-DMO | bcodmo_dataset_954262_v1 |