Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818765.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818765 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_818765/ | public | [Diatom Matrix RNAseq] - Transcriptome data for bacteria collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture (Metabolic Currencies of the Ocean Carbon Cycle) | Transcriptome data for bacteria Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, Polaribacter dokdonensis MED152, and Dokdonia MED134 collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture. The sequence data description for PRHNA448168 is at https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA448168.\n\ncdm_data_type = Other\nVARIABLES:\nSample_Name (unitless)\nNCBI_Bioproject_Accession (unitless)\nBioSample (Bio Sample, unitless)\nDescription (unitless)\nreplicate (unitless)\nNCBI_Genome_Accession (unitless)\ntaxon_microbe (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_818765/index.htmlTable | https://www.bco-dmo.org/dataset/818765
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_818765.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_818765&showErrors=false&email= | BCO-DMO | bcodmo_dataset_818765 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768550/ | public | [DYEatom: Metatranscriptome accessions and assembled contigs] - DYEatom Metatranscriptome metadata from RV/Point Sur cruise PS1312 in the Monterey Bay area, June-July 2013 (Linking physiological and molecular aspects of diatom silicification in field populations) | Metadata for assembled contigs and ORFS from metatranscriptome analysis from CTD casts in the Monterey Bay area on RV/Point Sur cruise PS1312, June-July 2013. Assembled contigs files are also available; see Supplemental Files.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject_type (Bio Project Type, unitless)\nBioProject_id (Bio Project Id, unitless)\nBioSample (Bio Sample, unitless)\nSample_name (unitless)\nSRA_id (unitless)\nPackage_type (unitless)\nversion (unitless)\nAccession (unitless)\nID (unitless)\ncruise_id (unitless)\nCTD_cast (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate_collection (unitless)\nstation (unitless)\ndepth (m)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_768550_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768550/index.htmlTable | https://www.bco-dmo.org/dataset/768550
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768550.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768550&showErrors=false&email= | BCO-DMO | bcodmo_dataset_768550 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782058.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782058 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782058/ | public | [reconstructed genomes] - Reconstructed genomes from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling) | Reconstructed genomes from North Pond\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_id (unitless)\nAssembly (unitless)\nLevel (unitless)\nWGS (unitless)\nBioSample (Bio Sample, unitless)\nIsolate (unitless)\nTaxonomy (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782058/index.htmlTable | https://www.bco-dmo.org/dataset/782058
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782058.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782058&showErrors=false&email= | BCO-DMO | bcodmo_dataset_782058 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775451.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775451 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775451.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_775451/ | public | [Sponge holobiont accessions and metadata] - NCBI accessions and metadata associated with Caribbean sponge metagenomes collected from Curacao, Belize, Cayman Islands and St. Croix, 2009 and 2017-2018 (Collaborative Research: Dimensions: Evolutionary Ecology of Sponges and Their Microbiome Drives Sponge Diversity on Coral Reefs) | NCBI accessions and metadata associated with Caribbean sponge metagenomes collected from Curacao, Belize, Cayman Islands and St. Croix, 2009 and 2017-2018.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (Bio Project, unitless)\nBioSample (Bio Sample, unitless)\nSample_name (unitless)\nsample_type (unitless)\nhost (unitless)\ncollection_date (unitless)\ngeographic_location (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsource_material_identifiers (unitless)\ndepth_ (Depth, feet seawater (fsw) or meters)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_775451_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_775451/index.htmlTable | https://www.bco-dmo.org/dataset/775451
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_775451.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_775451&showErrors=false&email= | BCO-DMO | bcodmo_dataset_775451 |