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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998771_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998771_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_998771_v1/ | public | [Metagenome from the Pacific Ocean OMZ] - Sample information and accession numbers for metagenome samples collected in the Eastern Tropical Pacific Oxygen Minimum Zone on R/V Sally Ride cruise SR2114 during December 2021 to January 2022 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss) | This dataset represents the shotgun metagenome samples used in used in Zhao et al., ISME J 2025. Samples for metagenomic sequencing were collected from the oxygen minimum zone in the Eastern Tropical Pacific Ocean during the R/V Sally Ride (SR2114) cruise, December 2021 – January 2022. Sea water was collected from all nine depths for all five sampling stations reported in the Zhao et al., paper (See Table for details). Collections were made using Niskin bottles on a rosette containing a conductivity–temperature–depth profiler (Sea-Bird SBE 911plus). DNA was extracted from biomass on collecting filters using the MoBio Power Soil kit (MoBio Inc. Carlsbad, CA, USA) and libraries were prepared for metagenomic sequencing using the Illumina DNA library prep kit with unique dual indexing according to manufacturer's instructions, except that the protocol was terminated after isolation of cleaned double stranded libraries. An equimolar mixture of the libraries was sequenced on an Illumina NovaSeq 6000 instrument at the Molecular Evolution Core, Georgia Institute of Technology. The shotgun metagenomes are available in the National Center for Biotechnology Information (NCBI) under BioProject number PRJNA1124864.\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nDNA_Concentration (micromoles per liter)\nDate_Sampled (unitless)\nDate_Extracted (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nVolume_Filtered (milliliters (mL))\nStation (unitless)\nOxygen_Concentration (micromoles per kilogram)\nExperiment_Accession (unitless)\nInstrument (unitless)\nStudy_Accession (unitless)\nSample_Accession (unitless)\nBioproejct_number (unitless)\nTotal_Bases (number of bases)\nLibrary_Name (Matches Sample ID above plus another unique identifier.)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_998771_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_998771_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_998771_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/998771
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_998771_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_998771_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_998771_v1 |