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log in [Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp.] - Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp. from Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023 (Northeast U.S. Shelf Long Term Ecological Research site) This dataset includes amplicon sequence variants (ASVs) representing species of the harmful algal bloom diatom genus Pseudo-nitzschia that were sampled from various sites in Narragansett Bay, Rhode Island, including the Narragansett Bay Long Term Plankton Time Series site, and various stations along the Northeast U.S. Shelf Long Term Ecological Research program transect. These data correspond to an analysis of Pseudo-nitzschia species composition and domoic acid toxin production during winters and summers from 2018-2023 in Narragansett Bay and the Northeast U.S. Shelf, which was prepared for submission to Harmful Algae (Roche, et al.). ASVs are also available under NCBI GenBank Accession Numbers PQ002243 - PQ002350 and MW447658 - MW447770 and raw sequencing data is available under NCBI Sequence Read Archive Accession numbers associated with BioSample accessions SAMN42123204 - 42123391 within BioProject PRJNA1129077.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nAssignment_method (unitless)\nNCBI_GenBank_Accession_Number (unitless)\nGenbank_ASV_number (unitless)\nASV_seq (unitless)\nBioProject (unitless)\n BCO-DMO bcodmo_dataset_936849_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_854887_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_854887_v1/ public [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids. Larvae were reared under two different temperatures to study temperature-dependent gene regulatory divergence between locally adapted Atlantic silverside populations in 2017. \n\nThe data are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with accession numbers SRR13523227- SRR13523268 associated with BioProject PRJNA694674 and BioSamples SAMN17531688 - SAMN17531729.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBioSample (unitless)\nSample_name (unitless)\nSRA (unitless)\ntaxonomy_id (unitless)\ntaxonomy_name (unitless)\necotype (unitless)\ndev_stage (unitless)\nsex (unitless)\ntissue (unitless)\nsample_type (unitless)\ncross (unitless)\ntreatment (degrees Celsius)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_854887_v1/index.htmlTable https://www.bco-dmo.org/dataset/854887 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_854887_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_854887_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_854887_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928636_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_928636_v1/ public [Ca. Aquarickettsia rohweri transcriptomes] - Sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) This dataset contains sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome sequences housed at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA1048415. All host colonies (Acropora cervicornis genotype ML-50) were collected from the same location, the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys between April and June of 2019.\n\nThe Rickettsiales-like bacterial parasite, 'Candidatus' Aquarickettsia rohweri (NCBI:txid2602574) is a ubiquitous coral symbiont that is strongly linked to coral disease susceptibility in staghorn coral, and is undergoing positive selection across the Caribbean. Although ‘Ca.' A. rohweri is a putative parasite, little is known about the activity of this bacterium in coral tissue. We performed a transcriptomic analyses of ‘Ca.' A. rohweri populations during a 6-week nutrient exposure experiment.  ‘Ca.' A. rohweri energy scavenging genes and those potentially involved during habitat transition are significantly upregulated during enrichment. Specifically, transcripts involved in signaling, virulence, two-component systems, and nutrient import genes are elevated under higher nutrients. These data support the predicted role of ‘Ca.' A. rohweri as a highly active nutrient-responsive A. cervicornis parasite and provide a glimpse at the mechanism of induced disease susceptibility while implicating nutrient exposure in its horizontal transmission.\n\ncdm_data_type = Other\nVARIABLES:\nSample_name (unitless)\nBioSample_Accession (unitless)\nSRA (unitless)\nBioProject (unitless)\nData_Type (unitless)\nScope (unitless)\nOrganism (unitless)\nCollected_Host_Organism (unitless)\nStrain (unitless)\nisolation_source (unitless)\nCollection_Year (unitless)\nCollection_date_note (unitless)\nTreatment (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_928636_v1/index.htmlTable https://osprey.bco-dmo.org/dataset/928636 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_928636_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_928636_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_928636_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_928039_v1/ public [Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux) Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.\n\ncdm_data_type = Other\nVARIABLES:\nBottle_ID (unitless)\nTreatment (unitless)\nTime_h (hour (h))\nMicromonas_cells_ml (cells per milliliter (cell/ml))\nBacteria_cells_ml (cells per milliliter (cell/ml))\nNH4_uM (micromolar (uM))\nNO3_uM (micromolar (uM))\nPO4_uM (micromolar (uM))\nNCBI_Sample_ID (unitless)\nAccession (unitless)\nBioProject (unitless)\nOrganism (unitless)\nTaxonomy_ID (unitless)\nDescription (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_928039_v1/index.htmlTable https://www.bco-dmo.org/dataset/928039 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_928039_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_928039_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_928039_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908689_v1/ public [Gulf of Alaska copepods: annotated transcriptomes] - Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads. The species are ecologically-important members of sub-arctic North Pacific marine zooplankton communities. The de novo assemblies included one generated several years ago plus eight new ones generated from six co-occurring species of calanoid copepods in the Gulf of Alaska. The transcriptomes include the first published ones for Neocalanus plumchrus, Neocalanus cristatus, Eucalanus bungii and Metridia pacifica and three for Neocalanus flemingeri and two for Calanus marshallae. Total RNA from single individuals was used to construct gene libraries that were sequenced on an Illumina Next-Seq platform. Short-sequence reads were assembled with Trinity software and resulting transcripts were annotated using the SwissProt database with additional functional annotation using gene ontology terms and enzyme function. The annotations files are the first ones published for these species. The integrated dataset can be used for quantitative inter- and intra-species comparisons of gene expression patterns across biological processes using the annotations.\n\nThese data are further described in the following publications: Hartline, et al. (2023) (DOI: 10.1038/s41597-023-02130-1), Roncalli, et al. (2022) (DOI: 10.1111/mec.16354), and Roncalli, et al. (2019) (DOI: 10.1038/s42003-019-0565-5)\n\ncdm_data_type = Other\nVARIABLES:\nseq_id (unitless)\nGenbank_accession (unitless)\nSpecies (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\nDepth_range (meters (m))\nLife_stage (unitless)\nSex (unitless)\nEntry (unitless)\n... (20 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_908689_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_908689_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908689_v1/index.htmlTable https://www.bco-dmo.org/dataset/908689 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908689_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908689_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908689_v1
log in [Kelletia kelletii: DNA and RNA sequence] - Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion) Understanding the genomic characteristics of non-model organisms can bridge research gaps between ecology and evolution. However, the lack of a reference genome and transcriptome for these species makes their study challenging. Here, we complete the first full genome and transcriptome sequence assembly of the non-model organism Kellet's whelk, Kelletia kelletii, a marine gastropod exhibiting a poleward range expansion coincident with climate change. We used a combination of Oxford Nanopore Technologies, PacBio, and Illumina sequencing platforms and integrated a set of bioinformatic pipelines to create the most complete and contiguous genome documented among the Buccinoidea superfamily to date. Genome validation revealed relatively high completeness with low missing metazoan Benchmarking Universal Single-Copy Orthologs (BUSCO) and an average coverage of ∼70x for all contigs. Genome annotation identified a large number of protein-coding genes similar to some other closely related species, suggesting the presence of a complex genome structure. Transcriptome assembly and analysis of individuals during their period of peak embryonic development revealed highly expressed genes associated with specific Gene Ontology (GO) terms and metabolic pathways, most notably lipid, carbohydrate, glycan, and phospholipid metabolism. We also identified numerous heat shock proteins (HSPs) in the transcriptome and genome that may be related to coping with thermal stress during the sessile life history stage. A robust reference genome and transcriptome for the non-model organism K. kelletii provide resources to enhance our understanding of its ecology and evolution and potential mechanisms of range expansion for marine species facing environmental changes.\n\ncdm_data_type = Other\nVARIABLES:\nRun (unitless)\nAssay_Type (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\nBioProject (unitless)\nBioSample (unitless)\nBioSampleModel (unitless)\nBytes (unitless)\nCenter_Name (unitless)\n... (29 more variables)\n BCO-DMO bcodmo_dataset_945292_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_948590_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_948590_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_948590_v1/ public [Metatranscriptomic nutrient response experiments - 2021 DY131] - Data from nutrient manipulation experiments (conducted on EXPORTS cruise DY131) aimed at relieving or inducing nutrient stress in phytoplankton and quantifying these responses using metatranscriptomic sequencing (Collaborative Research: Diatoms, Food Webs and Carbon Export - Leveraging NASA EXPORTS to Test the Role of Diatom Physiology in the Biological Carbon Pump) This dataset includes data from nutrient manipulation experiments aimed at relieving or inducing nutrient stress in phytoplankton and quantifying these responses using metatranscriptomic sequencing. Experiments were conducted by adding key macronutrients (N, P, Si) and Fe in different combinations over different growth periods, simulating potential alleviation of in situ nutrient stress or the induction of nutrient stress. Experiments were conducted on the EXports Processes in the Oceans from RemoTe Sensing (EXPORTS) cruise DY131 in the North Atlantic during May of 2021.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nDate_UTC (unitless)\nTime_UTC (unitless)\nEvent (unitless)\nActivity (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nexp_id (unitless)\nIncubation (unitless)\nTreatment (unitless)\nreplicate (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSRA_sample (unitless)\nPhosphate (millimoles per cubic meter (mmol m^3))\nPhosphate_flag (unitless)\nSilicate (millimoles per cubic meter (mmol m^3))\nSilicate_flag (unitless)\nNitrite (millimoles per cubic meter (mmol m^3))\nNitrite_flag (unitless)\n... (8 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_948590_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_948590_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_948590_v1/index.htmlTable https://www.bco-dmo.org/dataset/948590 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_948590_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_948590_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_948590_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922330_v1/ public [Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) High-throughput sequencing study of field-collected Neocalanus flemingeri pre-adults (stage CV) and adult females between 2015 and 2022. Dataset includes information and accession numbers of the raw sequence reads. Zooplankton collections were made in the northern Gulf of Alaska in collaboration with the Seward Long-term Monitoring Program and the northern Gulf of Alaska Long-term Ecological Research Program (LTER). Pre-adults were collected during the spring from multiple stations, sorted from net collections and immediately preserved. Adult females were collected mostly from Prince William Sound, but also on one occasion from the Gulf of Alaska. Adult females were collected from depth during diapause and preserved upon net retrieval.  In addition, time series data were generated in three different years to characterize the post-diapause period through the spawning phase. The purpose of the data collection is to generate gene expression profiles during different years and seasons to evaluate developmental stage and physiological state.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDepth_Range (meters (m))\nDate (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nLife_Stage (unitless)\nSex (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSample_Accession (unitless)\nSRA_Run_Accession (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922330_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922330_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922330_v1/index.htmlTable https://www.bco-dmo.org/dataset/922330 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922330_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922330_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922330_v1
log in [Seagrass Microbiome Data] -  (Collaborative Research: The role of a keystone pathogen in the geographic and local-scale ecology of eelgrass decline in the eastern Pacific) This dataset includes sample collection information and sequence accessions for 16S rRNA amplicon sequencing of eelgrass leaf and surrounding water column bacteria from 32 eelgrass meadows across latitudes from 55 to 32° N in the Northeastern Pacific during July and August 2019.  Sequence Read Archive (SRA) Experiments and BioSamples can be accessed from the NCBI BioProject PRJNA802566 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA802566/)\n\nEelgrass, Zostera marina, is impacted by outbreaks of wasting disease caused by the opportunistic pathogen Labyrinthula zosterae. We investigated how Z. marina phyllosphere microbial communities vary with rising wasting disease lesion prevalence and severity relative to plant and meadow characteristics like shoot density, longest leaf length, and temperature across 23° latitude in the Northeastern Pacific. We sampled 32 eelgrass meadows across latitudes from 55 to 32° N in the Northeastern Pacific during July and August 2019. This range included six regions (AK=Alaska, BC=British Columbia, WA=Washington, OR=Oregon, BB=Bodega Bay Northern California, SD=San Diego Southern California), with 5–6 meadows per region. The location of each region is AK: N 55° 32' 27.124” W 133° 11' 1.0546, BC: N 51° 48' 30.1469” W 128° 13' 27.2182, WA: N 48° 36' 4.9725” W 122° 59' 56.4203, OR: N 44° 69 43.717” W 124° 89 22.7337, BB: N 38° 14' 30.3218” W 122° 58' 32.5723, SD: N 32° 47' 37.5929” W 117° 12' 57.1071”. We selected eelgrass meadows within each region that had consistently high cover of eelgrass in recent years.\n\ncdm_data_type = Other\nVARIABLES:\nsample_title (unitless)\nSampleType (unitless)\nRegionName (unitless)\nSiteCode (unitless)\nTissueType (unitless)\nLesionStatus (unitless)\ncollection_date (unitless)\nLocationName (unitless)\nTidalHeight (unitless)\nTransect (unitless)\n... (8 more variables)\n BCO-DMO bcodmo_dataset_933635_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916134_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916134_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_916134_v1/ public [Substrate-specific metabolic responses of model marine bacteria] - Metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates (C-CoMP Model Bacteria Physiological Studies) This dataset includes metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw RNA sequences (50 bp reads in fastq format) have been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA972985 (https://www.ncbi.nlm.nih.gov/bioproject/972985).\n\ncdm_data_type = Other\nVARIABLES:\nSample_Name (unitless)\nAccession (unitless)\nBioProject (unitless)\nOrganism (unitless)\nStrain (unitless)\nTax_ID (unitless)\nGlucose_initial_concentration_uM (micromolar concentration)\nAcetate_initial_concentration_uM (micromolar concentration)\nSample_description (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_916134_v1/index.htmlTable https://www.bco-dmo.org/dataset/916134 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_916134_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_916134_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_916134_v1
log in [Subsurface Nitrospirota and Nitrospinota Origins] - Collection of subsurface bacteria Nitrospirota and Nitrospinota genome data including IMG and NCBI accessions for sequence datasets in June 2021 (Slow Life in Crust project) (Microbial activity in the crustal deep biosphere) The phyla Nitrospirota and Nitrospinota have received significant research attention due to their unique mitrogen metabolisms important to biogeochemical and industrial processes. These phyla are common inhabitants of marine and terrestrial subsurface environments and contain members capable of diverse physiologies in addition to nitrite oxidation and complete ammonia oxidation. We used phylogenomics and gene-based analysis with ancestral state reconstruction and gene-tree-species tree reconciliation methods to investigate the life histories of these two phyla. This dataset includes list of previously-published sequence datasets that were used for the analysis. The data and interpretations are published at DOI 10.1038/s41396-023-01397-x. Additional metadata such as NCBI accessions, assembly release dates, and NCBI taxon ids were added in December 2024.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nIMG_genome_id (unitless)\nGenBank_assembly (unitless)\nSample (unitless)\nCorrected_BioSample (unitless)\nBioProject (unitless)\nrelease_date (unitless)\nlast_updated_date (seconds since 1970-01-01T00:00:00Z)\npublication_date (seconds since 1970-01-01T00:00:00Z)\nDomain (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nNCBI_organism_taxid (unitless)\nIsolation_Source (unitless)\nIsolationPlot (unitless)\n... (11 more variables)\n BCO-DMO bcodmo_dataset_933610_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949777_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949777_v1/ public [Transcriptomics of Phytoplankton Cultures Grown on Various Phosphorus Sources] - Transcriptomics of phytoplankton cultures grown on various phosphorus sources in a laboratory experiment (Phosphonate Utilization by Eukaryotic Phytoplankton: Who, How, and Where?) A laboratory experiment was carried out to characterize the growth and physiological response of three species of eukaryotic phytoplankton grown with inorganic phosphate (+P), without phosphate (-P), and with methylphosphonate (+MPN) and aminoethylphosphonate (+AEPN) as the sole sources of phosphorus (P). Data reported in this dataset are the transcriptomic reads, in biological triplicate, of these culture growth substrate combinations.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBiosample (unitless)\nTreatment (unitless)\nReplicate (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nStrain (unitless)\nURL (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949777_v1/index.htmlTable https://www.bco-dmo.org/dataset/949777 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949777_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949777_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_949777_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924852_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924852_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_924852_v1/ public [Zostera marina whole genome resequencing] - Sample collection and sequence accession information for Zostera marina whole genome resequencing from specimens collected at 16 geographic locations worldwide in 2017 (Using genomics to link traits to ecosystem function in the eelgrass Zostera marina) This dataset includes sample collection and sequence accession information for Zostera marina whole genome resequencing from specimens collected at 16 geographic locations worldwide in 2017. Sequence accessions are housed in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).\n\ncdm_data_type = Other\nVARIABLES:\nSampleID (unitless)\nBioProject (unitless)\nLibrary_Code (unitless)\nSample_Description (unitless)\nLocation_Name (unitless)\nlatitude (degrees_north)\nlongitude (Long, degrees_east)\nSRA_accession (unitless)\nLibrary_type (unitless)\nSampled_tissue (unitless)\nInstrument (unitless)\nreads (unitless)\nNumber_of_bases_Raw_fastq (count)\nCoverage_Raw_fastq (genomes)\nNumber_of_bases_Clean_fastq (count)\nCoverage_Clean_fastq (genomes)\nMapped_pcnt (percent)\nProperly_paired_pcnt (percent)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_924852_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_924852_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_924852_v1/index.htmlTable https://www.bco-dmo.org/dataset/924852 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_924852_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_924852_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_924852_v1

 
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