Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_965379_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_965379_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_965379_v1/ | public | [Arctic Bacterial Genomes] - Under the ice bacterial cultures and genome sequences from the R/V Kronprins Haakon in the Arctic Ocean from May 18 to 21, 2023 (Collaborative Research: Drivers and effects of latent phage activation in marine SAR11) | Bacteria were cultured and sequenced from the Arctic Ocean under 2-meter-thick sea ice to identify patterns of gene, loss, and rearrangement. Cultures were obtained by high-throughput dilution to extinction cultivation using cryopreserved samples. Bacteria selected for genome sequencing were grown in 1 liter of Puget Sound seawater media and sequenced using the Oxford Nanopore Technologies (ONT) R10.4.1 Flongle flow cells with the SQK-RAD114 rapid library prep kit (Oxford Nanopore Technologies, Oxford, United Kingdom). Time-series data indicate that this collection represents up to 60% of the marine bacterial community in the Arctic. Their complete genomes provide insights into the evolutionary processes that underlie diversity and adaptation to the Arctic Ocean.\n\ncdm_data_type = Other\nVARIABLES:\nisolate (unitless)\nDate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nid (unitless)\ngenome_length (number of nucleotides)\nsequencing_covearge (unitless)\npcnt_gc (unitless)\ncoding_ratio (unitless)\nrRNA (unitless)\ngenome_accession (unitless)\nbioproject (unitless)\nbiosample (unitless)\nsequence_read_archive (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_965379_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_965379_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_965379_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/965379
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_965379_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_965379_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_965379_v1 |