Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_770157 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_770157.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_770157/ | public | [Oyster Cohort Traits] - Performance traits (e.g., survival, growth, size) for hatchery-produced oyster cohorts (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems) | Performance traits (e.g., survival, growth, size) for hatchery-produced oyster cohorts.\n\ncdm_data_type = Other\nVARIABLES:\nExp (unitless)\nSite (unitless)\nEff_allelic_diversity (unitless)\nAllelic_richness (Number of alleles)\nGenetic_relatedness (unitless)\nCohort (unitless)\nFinal_avg_size (millimeters (mm))\nInitial_avg_size (millimeters (mm))\nCage_alive (Number of oysters)\nCage_dead (Number of oysters)\nOpen_tile_alive (Number of oysters)\nOpen_tile_dead (Number of oysters)\nGrowth (millimeters (mm))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_770157/index.htmlTable | https://www.bco-dmo.org/dataset/770157
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_770157.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_770157&showErrors=false&email= | BCO-DMO | bcodmo_dataset_770157 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_964162_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_964162_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_964162_v1/ | public | [Performance of coral and sea anemone early life stages under normoxic and hypoxic conditions] - Performance of coral and sea anemone early life stages under normoxic and hypoxic conditions from lab and field experiments performed in Pennsylvania (USA) and Bermuda in 2023-2024 (CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales) | This dataset arose from a project in which we investigated how hypoxia influences coral and sea anemone early life stages by comparing hypoxia responses across larvae and juveniles of three cnidarian species representing a range of life histories: the reef-building coral Galaxea fascicularis, a broadcast spawner with horizontal transmission of endosymbiotic algae (family Symbiodiniaceae); the reef-building coral Porites astreoides, a brooder with vertical endosymbiont transmission; and the estuarine sea anemone Nematostella vectensis, a non-symbiotic broadcast spawner. Specifically, larvae were exposed to normoxic (i.e., controls) or hypoxic (dissolved oxygen < 2 mg L−1 for 6 h) conditions before being cultured (under normoxia) through the juvenile stage. Data pertaining to organismal performance—including size, ash-free dry weight, protein content, chlorophyll content, symbiont density, photosynthesis and respiration rates, photochemical yield, heat tolerance (survival and Fv/Fm), settlement rate, and swimming behavior—were collected at several time points alongside environmental variables such as temperature, salinity, and dissolved oxygen concentration.\n\ncdm_data_type = Other\nVARIABLES:\nData_filename (unitless)\nSpecies (unitless)\nTreatment (unitless)\nCohort (unitless)\nGroup (unitless)\nLife_stage (unitless)\nHours_post_treatment (hours)\nAFDW_ug_mm (µg/mm)\nChlorophyll_pg_symbiont (pg/cell)\nHours_at_36_C (hours)\nDark_adapted_Fv_Fm_1 (unitless)\nLarvae_surviving (unitless)\nTotal_larvae (unitless)\nProportion_surviving (unitless)\nPercent_surviving (percent)\n... (11 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_964162_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/964162
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_964162_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_964162_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_964162_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_964174_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_964174_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_964174_v1/ | public | [Targeted metabolomics data from coral and sea anemone larvae exposed to normoxic or hypoxic conditions] - Targeted metabolomics data from coral and sea anemone larvae exposed to normoxic or hypoxic conditions in lab and field experiments performed in USA and Bermuda during 2023-2024 (CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales) | These data arose from larvae of the sea anemone Nematostella vectensis and corals Galaxea fascicularis and Porites astreoides exposed to normoxic (i.e., control) or hypoxic conditions. Larvae were sampled in groups of 20-30 and these samples were processed for targeted metabolomics at the University of Pennsylvania Metabolomics Core. The dataset contains the species from which metabolomics data originate, experimental treatment (normoxia or hypoxia), experiment metadata, and abundance of each metabolite in each sample.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (units)\nTreatment (units)\nCohort (units)\nGroup (units)\nLife_stage (units)\nHours_post_treatment (hours)\nADP (nmol mg protein-1)\nAMP (nmol mg protein-1)\nATP (nmol mg protein-1)\ncAMP (nmol mg protein-1)\nCMP (nmol mg protein-1)\nCTP (nmol mg protein-1)\nGDP (nmol mg protein-1)\nGMP (nmol mg protein-1)\nGTP (nmol mg protein-1)\nITP (nmol mg protein-1)\nNAD (nmol mg protein-1)\nNADP (nmol mg protein-1)\nNAM (nmol mg protein-1)\nNMN (nmol mg protein-1)\nTTP (nmol mg protein-1)\nUMP (nmol mg protein-1)\n... (67 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_964174_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/964174
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_964174_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_964174_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_964174_v1 | |||||
| log in | [Year 1 orbitrap MZML files] - Raw proteome mass spectrometry data (.mzML files) from pacific herring embryos sampled at Semiahmoo Bay between February and April 2022 (MCA: Utilizing high-throughput proteomics to build a conceptual model of the effects of environmental change on early life stages of genetically diverse herring populations) | These are the raw data files from 5 cohorts of pacific herring embryos collected from Feb through April of 2022. Embryos were homogenized, and digested for proteomic analysis on a Lumos Orbitrap. Pooled samples were used with narrow window scans for library generation. The purpose of this data set is exploratory analysis for seasonal differences between early life stage proteome of pacific herring. All embryos are believed to be from the Semiahmoo Bay population since the Cherry Point population had no spawn detected in 2022.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nDate_Sampling (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nSample_ID (unitless)\nCohort (unitless)\nReplicate (unitless)\nMass_Spec_Run_Number (unitless)\nDate_Mass_Spec (unitless)\nSample_Type (unitless)\nFilename (unitless)\n | BCO-DMO | bcodmo_dataset_938909_v1 |