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log in [Coral physiological measurements] - Montipora capitata and Porites compressa Physiological Measurements for Experimental Corals and Parent Colonies from 2014-2015 (RAPID Hawaii project) (Will corals recover from bleaching under ocean acidification conditions?) Physiological data for Montipora capitata and Porites compressa: endosymbiont cell density (cells cm-2), Contribution of Total Carbon to Animal Respiration (CTAR, %), calcification (mg day-1 cm-2), biomass (g cm-2), total lipids (J gdw-1), photosynthesis and respiration (µmol hr-1 cm-2), Contribution of Zooxanthellae (Symbiodiniaceae) to Animal Respiration (CZAR, %), feeding rate (brine shrimp hr-1 cm-2), and Contribution of Heterotrophy to Animal Respiration (CHAR, %). Measurements for experimental corals were taken from one of three time points (November 2015, June 2014, or December 2015).\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nCollection_site (unitless)\nlatitude (Latitude_decimal_degrees, degrees_north)\nlongitude (Longitude_decimal_degrees, degrees_east)\nLat (degrees_north)\nLong (degrees_east)\nColony (unitless)\nSample_ID (unitless)\nHealth_status (unitless)\npH (unitless)\nFeeding_status (unitless)\nTreatment (unitless)\nTank (unitless)\nTime_point (unitless)\nEndo_density (cells cm-2)\nCalc (mg day-1 cm-2)\nTotal_biomass (g cm-2)\nTotal_lipids (J gdw-1)\nGross_P (umol O2 min-1 cm-2)\nLEDR (unitless)\nCZAR (unitless)\nFR (Brine shrimp hr-1 cm-2)\nCHAR (unitless)\nCTAR (unitless)\n BCO-DMO bcodmo_dataset_914498_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_715506 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_715506/ public [dataset8- Oxynoe sequence data] - Molecular species delimitation and gene flow in Oxynoe (PLDvFST project) (Quantifying larval behavior to reconcile genetic connectivity with biophysical model predictions) Molecular species delimitation and gene flow in Oxynoe (PLDvFST project)\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nisolate_code (unitless)\nspecimen_accession_numbers (unitless)\ncollection_site (unitless)\ndate (unitless)\ncollector (unitless)\naccession_COI (unitless)\naccession_16S (Accession 16 S, unitless)\naccession_H3 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_715506_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_715506/index.htmlTable https://www.bco-dmo.org/dataset/715506 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_715506.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_715506&showErrors=false&email= BCO-DMO bcodmo_dataset_715506
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719379.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719379 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719379.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_719379/ public [Fatty acid profiles] - Fatty acid profiles of M. menidia females and their unfertilized eggs. (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) Gas chromatography was used to quantify the absolute (mg g dry weight-1) and\nrelative concentrations (% of total) of 27 FAs for each of 5 females (whole\nindividual) and their unfertilized eggs (~ 1 ml). Samples were first dried and\nthen homogenized in a solution of chloroform-methanol (2:1 v/v) and\ntricosanoic acid (23:0) as an internal standard for quantification of mg\ng\\u22121\\u00a0dry mass of fatty acids. Lipids were cold-extracted from\napproximately 50 mg of dry mass. A Shimadzu GC-2014 gas chromatograph set with\na Phenomenex ZB-WAX plus capillary column (30\\u00a0m long; 0.53 mm ID; 1.0 um\nthick) was used to quantify FAs, and individual FAs were identified by\ncomparison to commercial standards (Supelco, Inc).\\u00a0\n \nThese data are\\u00a0associated with the corresponding paper:\n \n[Snyder, J.T.*, Murray, C.S.*, and Baumann, H. (2017) Potential for maternal\neffects on offspring CO2-sensitivities in a coastal marine fish. Journal of\nExperimental Marine Biology and Ecology (in\npress).](\\\\https://doi.org/10.1016/j.jembe.2017.11.002\\\\)\n \nOther datasets related to this paper:\n \n[Survival, length, and growth responses of M. menidia offspring from different\nfemales exposed to contrasting CO2 environments.](\\\\https://www.bco-\ndmo.org/dataset/719420\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nCollection_site (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\n... (6 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_719379_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_719379_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_719379/index.htmlTable https://www.bco-dmo.org/dataset/719379 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_719379.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_719379&showErrors=false&email= BCO-DMO bcodmo_dataset_719379
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_897895_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_897895_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_897895_v1/ public [Juvenile Black sea bass winter growth and lipid accumulation under varying food and temperature conditions - Experiment 1] - Winter growth and lipid accumulation in juvenile Black sea bass exposed to varying food and temperature conditions during lab experiments conducted from September 2021 to April 2022 at UConn Avery Point (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) The northern stock of Black sea bass (BSB, Centropristis striata) has greatly expanded over the past decade, potentially due to warming Northwest Atlantic shelf waters affecting overwintering especially in juveniles. To gather better empirical data we quantified winter growth and lipid accumulation in BSB juveniles from Long Island Sound using two complementing experiments. The data from Experiment 1 are presented here.\n\nExperiment 1 measured individual length growth (GR), weight-specific growth (SGR), growth efficiency, and lipid content at constant food and three static temperatures: 6°, 12°, and 19° Celsius (C). Average GR (SGR) decreased from 0.24 millimeters per day (mm d-1) at 19°C (0.89% d-1) to 0.15 mm d-1 at 12°C (0.54% d-1) to 0.04 mm d-1 at 6°C (0.17% d-1). Even at the coldest temperature, most juveniles sustained positive GRs and SGRs; hence, the species' true thermal growth minimum may be below 6°C. However, lipid accumulation was greatest at 12°C, which is close to what overwintering juveniles likely encounter offshore.\n\nThe data from Experiment 2 are presented in a related dataset (https://www.bco-dmo.org/dataset/898012). In both experiments, juveniles disproportionally accumulated lipid over lean mass, with lipid proportions tripling in Exp2 from 4% at 65 mm to 12% at 120 mm.\n\ncdm_data_type = Other\nVARIABLES:\nCollection_site (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nCollection_date (unitless)\nSample_date (unitless)\nSpecies (unitless)\nBSB_ID (unitless)\nGroup (unitless)\nTemp (degree Celsius)\nDays_W (number of days)\n... (21 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_897895_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_897895_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_897895_v1/index.htmlTable https://www.bco-dmo.org/dataset/897895 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_897895_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_897895_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_897895_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739345 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739345.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739345/ public [Palatability of algal species] - Feeding rates on and nutritional content of algal species collected in Antarctica, Fiji, and California. (Detecting genetic adaptation during marine invasions) Feeding rates on and nutritional content of algal species collected in Antarctica, Fiji, and California.\n\ncdm_data_type = Other\nVARIABLES:\nDivision (unitless)\nOrder (unitless)\nFamily (unitless)\nGenSpec (Gen Spec, unitless)\nLocation (unitless)\nCollection_Site (unitless)\nZone (unitless)\nLatitude_of_Collection (Latitude, decimal degrees)\nMean_Distribution_Latitude (Latitude, decimal degrees)\nAsh_Free_Dry_Mass (percent per drymass)\nPercent_Protein (percent per drymass)\nPercent_Carbon (percent per drymass)\nPercent_Nitrogen (percent per drymass)\nCarbon_Nitrogen (ratio of absolute milligrams)\nPercent_Phenolics (percent per drymass)\nCrabs_PercentT (Crabs Percent T, percent)\nUrchins_PercentT (Urchins Percent T, percent)\nWet_Mass (grams)\nDry_Mass (grams)\nWM_DM (grams)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_739345_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739345/index.htmlTable https://www.bco-dmo.org/dataset/739345 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739345.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739345&showErrors=false&email= BCO-DMO bcodmo_dataset_739345
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_662096 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_662096.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_662096/ public [Site locations and species sampled] - Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project) (Fundamental Coral-Microbial Associations) Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project)\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\ncolony_name (unitless)\ncollection_site (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_662096_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_662096_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_662096/index.htmlTable https://www.bco-dmo.org/dataset/662096 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_662096.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_662096&showErrors=false&email= BCO-DMO bcodmo_dataset_662096
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719420.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719420 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719420.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_719420/ public [Survival and size] - Survival, length, and growth responses of M. menidia offspring from different females exposed to contrasting CO2 environments. (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) Wild-caught M.\\u00a0menidia\\u00a0adults were spawned to test whether offspring\nfrom different mothers differ in their average survival and size responses to\nelevated CO2\\u00a0conditions.\\u00a0The experiment quantified three related\nsurvival and three size traits for each replicate, female, and\nCO2\\u00a0treatment: embryo survival (fertilization to 1\\u00a0dph), larval\nsurvival (1 to 16\\u00a0dph), and overall survival (fertilization to\n16\\u00a0dph); and size (SL) at hatch (1\\u00a0dph), SL at 16\\u00a0dph, and\nlarval growth rate\\u00a0(GR = (SL16dph\\u00a0\\u2013 SL1dph)/15).\n \nThese data are\\u00a0associated with the corresponding paper:\n \n[Snyder, J.T.*, Murray, C.S.*, and Baumann, H. (2017) Potential for maternal\neffects on offspring CO2-sensitivities in a coastal marine fish. Journal of\nExperimental Marine Biology and Ecology (in\npress).](\\\\https://doi.org/10.1016/j.jembe.2017.11.002\\\\)\n \nOther datasets related to this paper:\n \n[Fatty acid profiles of M. menidia females and their unfertilized\neggs.](\\\\https://www.bco-dmo.org/dataset/719379\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nCollection_site (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\nFemale (unitless)\nTotal_length (centimeters)\npH (Sea Water Ph Reported On Total Scale, NIST units)\n... (8 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_719420_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_719420_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_719420/index.htmlTable https://www.bco-dmo.org/dataset/719420 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_719420.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_719420&showErrors=false&email= BCO-DMO bcodmo_dataset_719420
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926368_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926368_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_926368_v1/ public [Zooplankton Acidification Lab Results] - Results from Calanus pacificus Acidification Laboratory Experiments from 2019-2020 (Zooplankton Swimming project) (Causes and consequences of hypoxia and pH impacts on zooplankton: Linking movement behavior  to vertical distribution.) We conducted laboratory experiments using stratified 1 m x 0.1 × 0.1 acrylic water columns to measure the effects of bottom water hypoxia and low pH on mortality, distribution, and swimming behaviors of the calanoid copepod Calanus pacificus. Calanus pacificus were collected from within Puget Sound, Washington, USA, between June and October of 2019 and 2020.  Their behaviors and vertical distributions in response to either hypoxic or acidified bottom waters were observed in an array of 4 replicate columns. Swimming behavior was observed for 90 minutes using 5-megapixel IR USB cameras. Two front-facing cameras (‘bottom camera', ‘surface camera') recorded swimming in the X (left, right) and Z (up, down) directions. An upwards-facing ‘base camera' was added to each tank in 2020 to improve tracking and behavioral analysis of copepods near the bottom. Base cameras recorded the bottom 2 cm of each tank in the X and Y (front, back) directions. \n\nThe primary data file of this dataset contains collection and organism details for copepods used in acidification experiments (926368_v1_zooplankton_acidification_pH_experiment_overview.csv). This dataset also includes four Supplemental Files .csv files summarizing results from our acidification experiments (926368_v1_zooplankton_acidification_pH_chemistry.csv, 926368_v1_zooplankton_acidification_pH_moribundity.csv, 926368_v1_zooplankton_acidification_pH_mean_height.csv, 926368_v1_zooplankton_acidification_pH_speed.csv).\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Date (unitless)\nCollection_Date (unitless)\nSort_Date (unitless)\nCollector (unitless)\nCollection_Site (unitless)\nLifestage (unitless)\nSex (unitless)\nCollection_Lat (degrees_north)\nlongitude (Collection_long, degrees_east)\nExperiment_Type (unitless)\nCollection_Notes (unitless)\nExperiment_Notes (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_926368_v1/index.htmlTable https://www.bco-dmo.org/dataset/926368 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_926368_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_926368_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_926368_v1

 
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