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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_715506 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_715506/ public [dataset8- Oxynoe sequence data] - Molecular species delimitation and gene flow in Oxynoe (PLDvFST project) (Quantifying larval behavior to reconcile genetic connectivity with biophysical model predictions) Molecular species delimitation and gene flow in Oxynoe (PLDvFST project)\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nisolate_code (unitless)\nspecimen_accession_numbers (unitless)\ncollection_site (unitless)\ndate (unitless)\ncollector (unitless)\naccession_COI (unitless)\naccession_16S (Accession 16 S, unitless)\naccession_H3 (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_715506/index.htmlTable https://www.bco-dmo.org/dataset/715506 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_715506.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_715506&showErrors=false&email= BCO-DMO bcodmo_dataset_715506
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872323_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872323_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_872323_v1/ public [Delaware Bay Oyster Samples] - Delaware Bay oyster archived tissues (SeaGo project) (Collaborative Research: Spatial analysis of genetic differences in salinity tolerance resulting from rapid natural selection in estuarine oysters) The Selection along Estuarine Gradients in Oysters (SEGO) project is a collaborative NSF-funded effort to measure and understand the dynamics of short term adaptive change at small spatial scale. We focused on eastern oysters as an example of a common marine life history – high fecundity, complex life cycle with early larval dispersal, and sedentary (sessile for oysters) life after larval settlement. \n\nThe data assembled in “NSF oyster tissues BCO-DMO” are collections made over three years for two types of genomic analysis: (1) annual adult samples collected along the axis of the Delaware Bay estuary to capture a gradient in potentially stressful low salinities, (2) adult samples collected from mid-bay for experimental low-salinity challenge experiments, and (3) spat and broodstock collected for low salinity challenge experiments directly on wild spat or on larval progeny of broodstock collected from low vs. moderate salinity, respectively. Transect adults were collected by dredge in 2018, 2019 and 2021 from the same 5 subset of sites, each year, that the Rutgers Haskin lab consistently monitors every year to manage the oyster fishery. By piggy backing on the Haskin monitoring effort, the SEGO project has benefited from the long term data and deep understanding that Rutgers scientists have built about the Delaware Bay oyster population. 2021 was an exception because oyster juveniles (spat) were found at three additional sites and collected and analyzed. Two replicate challenge experiments on adults were accomplished in 2019 and 2020 using similar-size oysters collected from the highest oyster density part of the Delaware Bay population where environmental variation seems to generate the least mortality. Full details on the challenge experiments, and genomic comparison of survivors vs. nonsurvivors, is being prepared for publication. \n\nThe analytical context involved low salinity challenge experiments on wild collected spat in 2020 – those methods and results are in press in Journal of Shellfish Research. Finally, broodstock collected in low vs. moderate salinity regions of the estuary were spawned to conduct a low salinity challenge experiment on their larvae, but larval performance and survival was too low for meaningful results.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\n... (17 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_872323_v1/index.htmlTable https://www.bco-dmo.org/dataset/872323 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_872323_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_872323_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_872323_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949682_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949682_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949682_v1/ public [Metadata for RNASeq of green crabs in the northeast Pacific] - Metadata for RNASeq of green crabs collected in the northeast Pacific from Apr 2017 to Aug 2021 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) This project explores genomic changes in the invasive European green crab (Carcinus maenas) in the northeast Pacific. It tracks the earliest stages of green crab invasion into a new environment where the species is predicted to have substantial ecological and economic impacts. Samples span time and space across the species range in the northeast Pacific, with a focus on areas where the species is currently expanding. This dataset includes individual metadata for 127 raw RNA-Seq reads, archived at GenBank's SRA under BioProject PRJNA1170986.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nSRA_accession (unitless)\nbiosample_accession (unitless)\nembayment (unitless)\nsite (unitless)\nstate (unitless)\nsex (unitless)\nsize_CW (Millimeters (mm))\ncolor (unitless)\ncollection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncollector (unitless)\ncollector_affiliation (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_949682_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_949682_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949682_v1/index.htmlTable https://www.bco-dmo.org/dataset/949682 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949682_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949682_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_949682_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949610_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949610_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949610_v1/ public [Metadata for targeted genotyping of green crabs in the northeast Pacific] - Metadata for targeted genotyping of green crabs collected in the northeast Pacific from Aug 2016 to Oct 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) This project explores genetic changes in the invasive European green crab (Carcinus maenas) in the northeast Pacific, using targeted genotyping of SNPs identified in prior high-resolution population genomics in the region. It tracks the early stages of green crab invasion into a new environment, particularly through repeated sampling of multiple size-classes of crabs from the same sites over multiple years. Samples span time and space across the species range in the northeast Pacific, with a focus on the coast of Washington and Oregon. This dataset includes individual collection and accession metadata for 1,662 crabs, for which raw demultiplexed reads are archived at GenBank's SRA under BioProject PRJNA1177418.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nSRA_accession (unitless)\nbiosample_accession (unitless)\nembayment (unitless)\nsite (unitless)\nstate (unitless)\nsex (unitless)\nsize_CW (Millimeters (mm))\ncolor (unitless)\ncollection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncollector (unitless)\ncollector_affiliation (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_949610_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_949610_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949610_v1/index.htmlTable https://www.bco-dmo.org/dataset/949610 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949610_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949610_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_949610_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765835 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765835.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_765835/ public [Sediment trap fluxes] - Carbon, Nitrogen, biogenic silica, thorium-234, and mass fluxes from upper ocean sediment traps at the Porcupine Abyssal Plain Sustained Observatory (PAP-SO) site in the Northeast Atlantic Ocean during RRS Discovery cruise DY077 in April of 2017 (Collaborative Research:   Are all traps created equal?  A multi-method assessment of the collection and detection of sinking particles in the ocean) Carbon, Nitrogen, biogenic silica, thorium-234, and mass fluxes from upper ocean sediment traps at the Porcupine Abyssal Plain Sustained Observatory (PAP-SO) site in the Northeast Atlantic Ocean during RRS Discovery cruise DY077 in April of 2017.\n\ncdm_data_type = Other\nVARIABLES:\ndeployment (unitless)\nstation (unitless)\nplatform (unitless)\ncollector (unitless)\ncollection_area (meters squared (m^2))\nreplicates (unitless)\ndepth (m)\nlatitude (degrees_north)\nlongitude (degrees_east)\nlat_recover (Latitude, decimal degrees (DD))\nlon_recover (Longitude, decimal degrees (DD))\ndate_start (unitless)\ntime_start (unitless)\ntime (ISO Date Time Start, seconds since 1970-01-01T00:00:00Z)\ndate_end (unitless)\ntime_end (unitless)\ndate_recover (unitless)\ntime_recover (unitless)\ndeploy_length (number of days)\nN_f_mean (millimoles per meter squared per day (mmol/m^2/d))\nN_f_err_mean (millimoles per meter squared per day (mmol/m^2/d))\nN_f_A (millimoles per meter squared per day (mmol/m^2/d))\nN_f_err_A (millimoles per meter squared per day (mmol/m^2/d))\nN_f_B (millimoles per meter squared per day (mmol/m^2/d))\nN_f_err_B (millimoles per meter squared per day (mmol/m^2/d))\n... (64 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_765835_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_765835/index.htmlTable https://www.bco-dmo.org/dataset/765835 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_765835.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_765835&showErrors=false&email= BCO-DMO bcodmo_dataset_765835
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926368_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926368_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_926368_v1/ public [Zooplankton Acidification Lab Results] - Results from Calanus pacificus Acidification Laboratory Experiments from 2019-2020 (Zooplankton Swimming project) (Causes and consequences of hypoxia and pH impacts on zooplankton: Linking movement behavior  to vertical distribution.) We conducted laboratory experiments using stratified 1 m x 0.1 × 0.1 acrylic water columns to measure the effects of bottom water hypoxia and low pH on mortality, distribution, and swimming behaviors of the calanoid copepod Calanus pacificus. Calanus pacificus were collected from within Puget Sound, Washington, USA, between June and October of 2019 and 2020.  Their behaviors and vertical distributions in response to either hypoxic or acidified bottom waters were observed in an array of 4 replicate columns. Swimming behavior was observed for 90 minutes using 5-megapixel IR USB cameras. Two front-facing cameras (‘bottom camera', ‘surface camera') recorded swimming in the X (left, right) and Z (up, down) directions. An upwards-facing ‘base camera' was added to each tank in 2020 to improve tracking and behavioral analysis of copepods near the bottom. Base cameras recorded the bottom 2 cm of each tank in the X and Y (front, back) directions. \n\nThe primary data file of this dataset contains collection and organism details for copepods used in acidification experiments (926368_v1_zooplankton_acidification_pH_experiment_overview.csv). This dataset also includes four Supplemental Files .csv files summarizing results from our acidification experiments (926368_v1_zooplankton_acidification_pH_chemistry.csv, 926368_v1_zooplankton_acidification_pH_moribundity.csv, 926368_v1_zooplankton_acidification_pH_mean_height.csv, 926368_v1_zooplankton_acidification_pH_speed.csv).\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Date (unitless)\nCollection_Date (unitless)\nSort_Date (unitless)\nCollector (unitless)\nCollection_Site (unitless)\nLifestage (unitless)\nSex (unitless)\nCollection_Lat (degrees_north)\nlongitude (Collection_long, degrees_east)\nExperiment_Type (unitless)\nCollection_Notes (unitless)\nExperiment_Notes (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_926368_v1/index.htmlTable https://www.bco-dmo.org/dataset/926368 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_926368_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_926368_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_926368_v1

 
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