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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918010_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918010_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918010_v1/ public [Antillogorgia americana Monthly Surveys] - Number and size of gonads found in monthly samples of Antillogorgia americana colonies at a study site in the San Blas Islands, Panama from July 1990 to August 1991 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) The reproductive biology of the branching octocoral Antillogorgia americana was studied at a site on the Caribbean coast of Panama in 1990-1991. Eleven colonies were tagged and monthly samples were collected over a 14-month period. Colonies were gonochoric and the samples included 6 females and 4 females. Ten polyps were examined from each sample and the number and size of gonads were determined.  An additional 4 branches were sampled from a female colony in January 1991 and fecundity was determined relative to the branch, position of branchlet on the branch, and position of the polyp on the branchlet. The lack of synchrony among colonies on the scale of months may reflect less need for all colonies to spawn in a single event among abundant species that release large numbers of gametes. Such a strategy also spreads the risk of reproductive failure due to environmental conditions during any single month. Multiple spawning episodes can also drive reproductive isolation of populations and may reflect the presence of cryptic species within the taxon. Studies of reproductive timing can be an important adjunct in identifying variation in life history strategies as well as assessing the validity of species boundaries. \n\nThis dataset includes the number and size of gonads found in monthly samples of each of 11 A. americana colonies.\n\ncdm_data_type = Other\nVARIABLES:\nSex (unitless)\nColony (unitless)\nMonth (unitless)\nYear (unitless)\nPolyp (unitless)\nNumber (unitless)\nAvg_diam (micrometers (um))\nVolume (cubic millimeters (mm^3))\nN_GE_400 (unitless)\nDiam1 (micrometers (um))\nDiam2 (micrometers (um))\nDiam3 (micrometers (um))\n... (4 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918010_v1/index.htmlTable https://www.bco-dmo.org/dataset/918010 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918010_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918010_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918010_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718585_v3 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718585_v3.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_718585_v3/ public [Bleached Octocoral Symbiont Cell Counts] - Cell counts of symbionts in Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015 to August 2017) at Long Key in the Florida Keys (RAPID: Variations in symbiont diversity in octocoral across seasons and a predicted bleaching event) Cell counts of symbionts in Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015 to August 2017) at Long Key in the Florida Keys.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nyear_collection (unitless)\nmonth_collection (unitless)\nColony (unitless)\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nheight (millimeters (mm))\ndiameter (millimeters (mm))\nvol (cubic millimeters (mm^3))\ncount_1 (unitless)\ncount_2 (unitless)\ncount_3 (unitless)\ncount_4 (cells per 0.1 microliter (Cells/0.1 uL))\ncount_avg (cells per 0.1 microliter (Cells/0.1 uL))\ncount_stdev (cells per 0.1 microliter (Cells/0.1 uL))\ntotal_cells_in_sample (cells per 0.1 milliliter (Cells/0.1 mL))\ncells_vol_tissue (cells per cubic centimeter of tissue (Cells/cm3 tissue))\ncomment (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_718585_v3_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_718585_v3_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_718585_v3/index.htmlTable https://www.bco-dmo.org/dataset/718585 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_718585_v3.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_718585_v3&showErrors=false&email= BCO-DMO bcodmo_dataset_718585_v3
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920168_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920168_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_920168_v1/ public [Bulk cyclic AMP (cAMP) assays] - Results from bulk cyclic AMP (cAMP) assays conducted to investigate the role of soluble adenylyl cyclase (sAC) in sperm from the gonochoric, broadcast spawning coral Astrangia poculata (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress) Most stony corals liberate their gametes into the water column via broadcast spawning, where fertilization hinges upon the activation of directional sperm motility. Sperm from gonochoric and hermaphroditic corals display distinct morphological and molecular phenotypes, yet it is unknown whether the signallng pathways controlling sperm motility are also distinct between these sexual systems. We addressed this knowledge gap using the gonochoric, broadcast spawning coral Astrangia poculata. This dataset is from bulk cyclic AMP (cAMP) assays conducted to investigate the role of soluble adenylyl cyclase (sAC) in sperm. Data are associated with Glass et al. (2023) Proceedings of the Royal Society B (10.1098/rspb.2023.0085). These data are also published in Dryad under DOI 10.5061/dryad.rn8pk0pg8.\n\ncdm_data_type = Other\nVARIABLES:\nColony (unitless)\ntime_elapsed (Time, seconds)\nTreatment (unitless)\nStim (unitless)\ncAMP_pmol_mL (picomoles per milliliter (pmol/mL))\nProtein_ug_mL (micrograms per milliliter (ug/mL))\ncAMP_nmol_mg (nanomoles per milligram (nmol/mg))\ncAMP_nmol_ng (nanomoles per nanomgram (nmol/ng))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_920168_v1/index.htmlTable https://www.bco-dmo.org/dataset/920168 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_920168_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_920168_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_920168_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872486_v2 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872486_v2.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_872486_v2/ public [Coral clipping experiment - branching] - Branching data from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes per capita branching ratio, number of new branches, and number of new branches per mother branch for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nTreatment (unitless)\nSiteTreat (unitless)\nColony (unitless)\nNewBranches (unitless)\nOldBranches (unitless)\nPerCapitaRatio (unitless)\nNumberofMotherBranches (unitless)\nMotherBranch (unitless)\nNewDaughterBranches (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_872486_v2/index.htmlTable https://www.bco-dmo.org/dataset/872486 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_872486_v2.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_872486_v2&showErrors=false&email= BCO-DMO bcodmo_dataset_872486_v2
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872600_v2 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872600_v2.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_872600_v2/ public [Coral clipping experiment - growth] - Branch extension measurements from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes branch extension measurements for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nColony (unitless)\nTreatment (unitless)\nSiteTreat (unitless)\nBranch_Number (unitless)\nGrowth_cm (centimeters (cm))\nJun_99 (centimeters (cm))\nJul_00 (centimeters (cm))\nBranchType (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_872600_v2/index.htmlTable https://www.bco-dmo.org/dataset/872600 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_872600_v2.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_872600_v2&showErrors=false&email= BCO-DMO bcodmo_dataset_872600_v2
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762511/ public [Coral colony sequece accessions: Hidden resilience to recurrent bleaching] - RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa) RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. This dataset includes accession numbers for 36 RNAseq libraries housed at The National Center for Biotechnology Information (NCBI).\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ncolony (unitless)\nspecies (uniless)\ndate (unitless)\nyear (unitless)\nmonth (unitless)\nbleaching_status (percent)\nAccession (unitless)\nAccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762511/index.htmlTable https://www.bco-dmo.org/dataset/762511 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762511.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762511&showErrors=false&email= BCO-DMO bcodmo_dataset_762511
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762497/ public [Coral colony sequence accessions: The genomics of recovery from coral bleaching] - Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa) Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndate (unitless)\ncolony (unitless)\nbleaching_status (percent (%))\naccession (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nspecies (unitless)\naccession_link (untiless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_762497_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762497/index.htmlTable https://www.bco-dmo.org/dataset/762497 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762497.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762497&showErrors=false&email= BCO-DMO bcodmo_dataset_762497
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_933832_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_933832_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_933832_v1/ public [Coral lesion frequencies and sizes after fish feces treatment] - Lesion frequencies and sizes after fish feces treatment on coral samples collected on the north shore of Mo’orea, French Polynesia, Oct 2020 to Jun 2021 (CAREER: Testing the effects of predator-derived feces on host symbiont acquisition and health) This datafile contains frequencies and sizes (number of polyps killed) developed in coral tissues after the application and removal of fish feces to test whether fish from different guilds affect coral health in distinct ways.There were five treatments: fresh feces from a corallivorous butterflyfish (FC); fresh feces from a grazer/detritivore (FG); sterilized feces from a corallivorous butterflyfish (SC); sterilized feces from a grazer/detritivore (SG); no-feces control (C). For the fresh feces treatments (FC, FG), we applied 100 µl of fresh feces isolated from the hindgut of the butterflyfish Chaetodon ornatissimus (FC) or the grazer/detritivore Ctenochaetus striatus (FG) directly onto each coral fragment. For the sterilized feces treatments (SC, SG), fecal pellets were sterilized in a pressure cooker for 40 minutes at 120°C and then applied in the same manner as fresh feces. The experiment ran for ~22 hours. The experiment was conducted in three iterations in Mo'orea, French Polynesia, over two years (2020, 2021).\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nCollection_Date (unitless)\nExperiment (unitless)\nTreatment (unitless)\nColony (unitless)\nReplicate (unitless)\nHealth (unitless)\nDead_Polyps (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_933832_v1/index.htmlTable https://www.bco-dmo.org/dataset/933832 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_933832_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_933832_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_933832_v1
log in [Coral physiological measurements] - Montipora capitata and Porites compressa Physiological Measurements for Experimental Corals and Parent Colonies from 2014-2015 (RAPID Hawaii project) (Will corals recover from bleaching under ocean acidification conditions?) Physiological data for Montipora capitata and Porites compressa: endosymbiont cell density (cells cm-2), Contribution of Total Carbon to Animal Respiration (CTAR, %), calcification (mg day-1 cm-2), biomass (g cm-2), total lipids (J gdw-1), photosynthesis and respiration (µmol hr-1 cm-2), Contribution of Zooxanthellae (Symbiodiniaceae) to Animal Respiration (CZAR, %), feeding rate (brine shrimp hr-1 cm-2), and Contribution of Heterotrophy to Animal Respiration (CHAR, %). Measurements for experimental corals were taken from one of three time points (November 2015, June 2014, or December 2015).\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nCollection_site (unitless)\nlatitude (Latitude_decimal_degrees, degrees_north)\nlongitude (Longitude_decimal_degrees, degrees_east)\nLat (degrees_north)\nLong (degrees_east)\nColony (unitless)\nSample_ID (unitless)\nHealth_status (unitless)\npH (unitless)\nFeeding_status (unitless)\nTreatment (unitless)\nTank (unitless)\nTime_point (unitless)\nEndo_density (cells cm-2)\nCalc (mg day-1 cm-2)\nTotal_biomass (g cm-2)\nTotal_lipids (J gdw-1)\nGross_P (umol O2 min-1 cm-2)\nLEDR (unitless)\nCZAR (unitless)\nFR (Brine shrimp hr-1 cm-2)\nCHAR (unitless)\nCTAR (unitless)\n BCO-DMO bcodmo_dataset_914498_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925751_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925751_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925751_v1/ public [Macroalgal biodiversity experiment: coral growth and tissue mortality data] - Coral (Pocillopora verrucosa) growth and tissue mortality from experimental field plots in Moʻorea, French Polynesia in 2021 (Positive Effects of Coral Biodiversity on Coral Performance: Patterns, Processes, and Dynamics) Hundreds of studies now document positive relationships between biodiversity and critical ecosystem processes, but as ecological communities worldwide shift towards new species configurations, less is known regarding how biodiversity of undesirable species will shape the functioning of ecosystems or foundation species. We manipulated macroalgal species richness in experimental field plots to test whether and how identity and diversity of competing macroalgae affected the growth, survival, and microbiome of a common coral in Moʻorea, French Polynesia. These data include coral (Pocillopora verrucosa) percent growth and tissue mortality among corals outplanted into 25 cm x 21 cm experimental plots in the back reef lagoon on the north coast of Moʻorea, French Polynesia (17°28′37″S 149°50′21″W). We varied the macroalgal community on the upper surface of each plot by outplanting monocultures holding similar masses of: (1) Sargassum pacificum, (2) Turbinaria ornata, or (3) Amansia rhodantha, as well as (4) polycultures containing all three species (12 plots per treatment; Figure 1 of Clements et al., 2024). There were also two additional treatments: (5) plots with plastic algal mimics to control for effects of shading or abrasion unrelated to the biotic properties of live seaweeds and 6) control plots where corals, but not living algae or physical mimics, were present (n = 12 plots/treatment).\n\nThis dataset includes coral (Pocillopora verrucosa) growth and tissue mortality at 9 weeks for plots with no algae (control), plastic algal mimics, monocultures of Amansia rhodantha, Turbinaria ornata, or Sargassum pacificum, and polycultures containing all three algal species.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nTreatment (unitless)\nPlot (unitless)\nColony (unitless)\nPosition (unitless)\nGrowth_percent (unitless)\nMortality_percent (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925751_v1/index.htmlTable https://www.bco-dmo.org/dataset/925751 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925751_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925751_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_925751_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920623_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_920623_v1/ public [Motility assays] - Results from motility assays carried out as part of a study investigating the role of soluble adenylyl cyclase (sAC) in sperm from the gonochoric, broadcast spawning coral Astrangia poculata (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress) Most stony corals liberate their gametes into the water column via broadcast spawning, where fertilization hinges upon the activation of directional sperm motility. Sperm from gonochoric and hermaphroditic corals display distinct morphological and molecular phenotypes, yet it is unknown whether the signallng pathways controlling sperm motility are also distinct between these sexual systems. We addressed this knowledge gap using the gonochoric, broadcast spawning coral Astrangia poculata. This dataset results from motility assays carried out to analyze sperm motility. Data are associated with Glass et al. (2023) Proceedings of the Royal Society B (10.1098/rspb.2023.0085). These data are also published in Dryad under DOI 10.5061/dryad.rn8pk0pg8.\n\ncdm_data_type = Other\nVARIABLES:\nColony (unitless)\nMedium (unitless)\nTreatment (unitless)\nStim (unitless)\nPrct_motile (unitless (percent))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_920623_v1/index.htmlTable https://www.bco-dmo.org/dataset/920623 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_920623_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_920623_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_920623_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_662791 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_662791.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_662791/ public [Nearest neighbor surveys] - Data describing interactions between neighboring coral colonies on St. John, Virgin Islands in 2014. (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019) Data describing interactions between neighboring coral colonies on St. John, Virgin Islands in 2014.\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncolony (unitless)\ntransect (unitless)\nmeter (meters)\nspecies (unitless)\nheight (centimeters)\nwidth (centimeters)\nthickness (centimeters)\nvisibleInhibition (Visible Inhibition, unitless)\ndistance (centimeters)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_662791_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_662791/index.htmlTable https://www.bco-dmo.org/dataset/662791 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_662791.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_662791&showErrors=false&email= BCO-DMO bcodmo_dataset_662791
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735583 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735583.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_735583/ public [OA and temp expt. - coral growth] - Net calcification, gross calcification, and linear extension rates of fragments of 4 species of coral over a 93-day ocean acidification and warming laboratory experiment (Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales) This dataset includes measurements of calcification, linear extension, and surface area for four species of Caribbean reef-building corals (Siderastrea siderea, Pseudodiploria strigosa, Porites astreoides, and Undaria tenuifolia) after a 93-day ocean acidification (280-3200 \\u03bcatm) and warming (28\\u00b0C and 31\\u00b0C) experiment. Both calcification, measured using a buoyant weight method, and surface area, quantified using image processing software on photos taken of each fragment, were assess every 30 days throughout the experiment. Linear extension was quantified at the end of the experiment for total linear growth.\n\ncdm_data_type = Other\nVARIABLES:\nreefzone (unitless)\nspecies_code (unitless)\ncolony (unitless)\ncoral (unitless)\ntank (unitless)\ntreatment (unitless)\npCO2_label (P CO2 Label, unitless)\npCO2_target (P CO2 Target, micro-atmospheres)\ntemp_target (degrees Celsius)\npCO2 (P CO2, micro-atmospheres)\ntemp (Temperature, degrees Celsius)\nsurface_area (square centimeters)\nlinear_extension (millimeters/day (mm day-1))\ntime_point (unitless)\ncalc_rate (milligrams/centimeter^2/day (mg cm-2 day-1))\ncalc_gross (milligrams/centimeter^2/day (mg cm-2 day-1))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_735583/index.htmlTable https://www.bco-dmo.org/dataset/735583 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_735583.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_735583&showErrors=false&email= BCO-DMO bcodmo_dataset_735583
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735609 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735609.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_735609/ public [OA and temp expt. - survival] - Observed survival of coral fragments throughout a 93-day ocean acidification and warming experiment (Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales) This dataset includes the observed survival of four species of Caribbean reef-building corals (Siderastrea siderea, Pseudodiploria strigosa, Porites astreoides, and Undaria tenuifolia) throughout a 93-day ocean acidification (280-3200 \\u03bcatm) and warming (28\\u00b0C and 31\\u00b0C) experiment. Survival was assessed every 30 days during the experiment. After the experiment, these data were analysed to evaluate the effects of ocean acidification and warming on the survivorship of the four corals species.\n\ncdm_data_type = Other\nVARIABLES:\ncoral (unitless)\ntreatment (unitless)\ntank (unitless)\ntemp (Temperature, degrees Celsius)\npCO2 (P CO2, micro-atmospheres)\npCO2_label (P CO2 Label, unitless)\ntemp_target (degrees Celsius)\nspecies_code (unitless)\nreefzone (unitless)\ncolony (unitless)\ntod (days)\ndead (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_735609/index.htmlTable https://www.bco-dmo.org/dataset/735609 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_735609.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_735609&showErrors=false&email= BCO-DMO bcodmo_dataset_735609
log in [Palau Coral Reef Experiment 2018:  Pulse Amplitude Modulation (PAM) fluorometry] - Coral pulse amplitude modulation (PAM) fluorometry data from a heating experiment using samples collected from Nikko Bay and Rebotel Reef in Palau in the spring of 2018 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses) Coral reefs surrounding Palau, Micronesia are living within a broad range of thermal habitats. Specifically, corals living on the offshore barrier reefs surrounding Palau reside in waters with low temperature variability compared to the much warmer and more acidic waters of near shore environments surrounding the Rock Island habitats. \n\nThis study was designed to test the differences in thermal physiology among two species of reef corals that reside at both of these locations. Specifically, we examined how short-term elevated temperature influences  the photochemistry of each coral species from each location before and after heating, as measured by active chlorophyll fluorescence recorded by pulse amplitude modulation (PAM) fluorometry.\n\ncdm_data_type = Other\nVARIABLES:\nLocation_Name (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nSpecies (unitless)\nDate (unitless)\nDay (unitless)\nTreatment (unitless)\nLocation (unitless)\nColony (unitless)\nFrag (unitless)\nSymbiont (unitless)\nFq_Fm (unitless)\nFv_Fm (unitless)\nQm (unitless)\n BCO-DMO bcodmo_dataset_855054_v1
log in [Palau Coral Reef Experiment 2018: Biometrics] - Coral biometrics data from a heating experiment using samples collected from Nikko Bay and Rebotel Reef in Palau in the spring of 2018 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses) Using samples collected from Nikko Bay and Rebotel Reef in Palau in the spring of 2018, this dataset examines coral physiology of two species of coral, Psammacora digitata and Pocillopora verrucosa, as part of a short-term heating experiment.\n\ncdm_data_type = Other\nVARIABLES:\nLocation_Name (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nSpecies (unitless)\nLSID (units)\nDate (unitless)\nDay (unitless)\nSymbiont (unitless)\nTreatment (Degrees Celcius (°C))\nColony (unitless)\nCell_Density (number of cells per square centimeter of coral)\nChl_a (picograms chlorophyll a per algal cell)\nHost_protein (micrograms soluble protein per square centimeter of coral skeleton)\nGross_photosynthesis (micrograms of oxygen per algal cell per hour)\nRespiration (milligrams oxygen per milligrams animal protein per hour)\nPhotosynthesis_Respiration (unitless)\n BCO-DMO bcodmo_dataset_855036_v1
log in [Palau Coral Reef Experiment 2018: Isotopes] - Coral Isotope data from a heating experiment using samples collected from Nikko Bay and Rebotel Reef in Palau in the spring of 2018 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses) Coral reefs surrounding Palau, Micronesia are living within a broad range of thermal habitats. Specifically, corals living on the offshore barrier reefs surrounding Palau reside in waters with low temperature variability compared to the much warmer and more acidic waters of near shore environments surrounding the Rock Island habitats. \n\nThis study was designed to test the differences in thermal physiology among two species of reef corals that reside at both of these locations. Specifically, we examined how short-term elevated temperature influences  the uptake and assimilation of carbon and nitrogen isotopes into the symbiotic algae, the coral tissue, and the coral skeleton among these two coral species.\n\ncdm_data_type = Other\nVARIABLES:\nLocation_Name (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nSpecies (unitless)\nSym (unitless)\nTreatment (unitless)\nDate (unitless)\nDay (unitless)\nColony (unitless)\na_13catom (percent (%))\nh_13catom (percent (%))\ns_13catom (percent (%))\na_15natom (percent (%))\nh_15natom (percent (%))\n BCO-DMO bcodmo_dataset_948025_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920273_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920273_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_920273_v1/ public [Protein kinase A (PKA) substrate phosphorylation assays] - Results from protein kinase A (PKA) substrate phosphorylation assays conducted to investigate the role of soluble adenylyl cyclase (sAC) in sperm from the gonochoric, broadcast spawning coral Astrangia poculata (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress) Most stony corals liberate their gametes into the water column via broadcast spawning, where fertilization hinges upon the activation of directional sperm motility. Sperm from gonochoric and hermaphroditic corals display distinct morphological and molecular phenotypes, yet it is unknown whether the signallng pathways controlling sperm motility are also distinct between these sexual systems. We addressed this knowledge gap using the gonochoric, broadcast spawning coral Astrangia poculata. This dataset is from protein kinase A (PKA) substrate (sub) phosphorylation assays used to investigate the role of PKA in sperm. Data are associated with Glass et al. (2023) Proceedings of the Royal Society B (10.1098/rspb.2023.0085). These data are also published in Dryad under DOI 10.5061/dryad.rn8pk0pg8.\n\ncdm_data_type = Other\nVARIABLES:\nColony (unitless)\ntime_elapsed (Time, seconds)\nTreatment (unitless)\nStim (unitless)\nLoad (micrograms (ug))\nIntensity (unitless)\nInvert (unitless)\nFold_increase (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_920273_v1/index.htmlTable https://www.bco-dmo.org/dataset/920273 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_920273_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_920273_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_920273_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918220_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918220_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918220_v1/ public [qPCR assays] - Results from qPCR assays to quantify the abundance and photochemical performance of symbionts relative to coral cells in three coral species collected from colonies in southeast Florida in April and October 2019 before, during, and after heat stress tests (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications) This dataset contains results from assays to quantify the abundance and photochemical performance of Breviolum, Cladocopium, and Durusdinium symbionts relative to coral cells in Montastraea cavernosa, Orbicella faveolata, and Siderastrea siderea corals collected from colonies in southeast Florida in April 2019 and in October 2019, before, during and after aquarium-based experimental heat stress tests. Bulk genomic DNA was extracted from tissue scrapings taken from 2.5cm diameter cores of corals and was used as a template for symbiont genus-specific qPCR assays. The resulting CT values were used to calculate the relative abundance of each symbiont genus within each coral core over the course of the heat stress. The photochemical efficiency of each coral core was also measured periodically throughout heat stress tests using an imaging pulse amplitude modulated (I-PAM) fluorometer. The publication based on these data is Buzzoni, et al. (2023) (DOI: 10.1007/s00338-023-02428-x).\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nTreatment (unitless)\nCore (unitless)\nCollection_Latitude (degrees_north)\nlongitude (Collection_longitude, degrees_east)\nTimepoint (unitless)\nSym_Host (unitless)\nY2 (unitless)\nPropD (unitless)\nBatch (unitless)\nDate (unitless)\nColony (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918220_v1/index.htmlTable https://www.bco-dmo.org/dataset/918220 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918220_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918220_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918220_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_786548 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_786548.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_786548/ public [Reciprocal transplant expt. - PSII of random colonies] - Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata from Varadero and Rosario reefs, Colombia, May 2017 (RAPID: Coral robustness: lessons from an \"improbable\" reef) Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (\\u0394F/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata for a reciprocal transplant experiment, from Varadero and Rosario reefs, Colombia, May 2017\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\ntime2 (Time, unitless)\nType (unitless)\nSite (unitless)\nColony (unitless)\nF (unitless)\nFm_prime (unitless)\nYield_PSII (unitless)\ndepth (m)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_786548/index.htmlTable https://www.bco-dmo.org/dataset/786548 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_786548.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_786548&showErrors=false&email= BCO-DMO bcodmo_dataset_786548

 
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