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log in [16S rRNA sequences for outplanted Acropora cervicornis sexual recruits] - 16S rRNA sequences for outplanted Acropora cervicornis sexual recruits collected from Mote Marine Laboratory and Looe Key National Marine Sanctuary from 2020-2022 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) A pervasive association exists between the bacterium Aquarickettsia rohweri and Caribbean Acropora, as A. rohweri dominates microbiomes of field-collected samples of this coral species. In particular, this bacterial species is highly abundant in genotypes of Acropora cervicornis susceptible to white band disease with reduced abundance in disease-resistant genotypes. A. rohweri, a member of the order Rickettsiales, is hypothesized to be an obligate symbiont dependent on the coral holobiont for nutrition and energy. Many other closely-related parasites within Rickettsiales are transmitted vertically, and A. rohweri is unlikely to persist in a free-living stage due to its limited metabolic capabilities. This bacterial parasite was therefore expected to be transmitted vertically between host generations. However, phylogenomic analyses of Acropora spp. and A. rohweri did not reveal the co-evolutionary characteristics expected of a vertically transmitted symbiont. These characteristics could be obscured, however, by horizontal transmission between hosts. The identification of A. rohweri in evolutionarily distant aquatic hosts ranging from ctenophores to sponges also strongly supports horizontal transmission of this species. \n\nTo better understand the transmission dynamics of Aquarickettsia, populations of this bacteria were quantified in early life stages of A. cervicornis (gametes, planula larvae, early sexual recruits, and year-old juveniles) produced and raised in the land-based nursery at Mote Marine Laboratory in the Florida Keys. These corals were produced via controlled two-parent crosses involving six different genotypes across three annual spawning events. We found that Aquarickettsia was absent from captive-raised individuals though present in parental genotypes maintained in Mote Marine Laboratory's in situ coral nursery. In March 2021, offspring were transferred to the same in situ nursery or outplanted to reef plots either near to or far from (> 50 m) adult A. cervicornis to determine if proximity to other colonies affected parasite acquisition. Corals were sampled one week, one month, and two months post-transplantation to assess timing of Aquarickettsia infection and to examine shifts in the coral microbiome overall due to transplantation. We determined that proximity to wild or outplanted A. cervicornis influenced Aquarickettsia acquisition in outplanted conspecifics that lacked Aquarickettsia prior to outplanting. Only corals that were in close proximity to adult A. cervicornis acquired Aquarickettsia, and acquisition took between 1 and 6 months. Importantly, corals outplanted far from previously-extant outplants did not acquire Aquarickettsia by a full year after transplantation to the reef. This suggests that horizontal transmission is important in the acquisition of this putative parasite, and the parasite is likely transmitted by other A. cervicornis or reef organisms primarily associated with outplanted A. cervicornis (e.g. corallivorous snails, ciliates, bearded fireworms). We also observed that not all conspecifics from the same families acquired the parasite, even within the same site. This suggests that Aquarickettsia acquisition may require prolonged contact with a vector, or that there is an element of chance in exposure to and subsequent infection with Aquarickettsia.\n\ncdm_data_type = Other\nVARIABLES:\nSampleName (unitless)\n... (50 more variables)\n BCO-DMO bcodmo_dataset_924594_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_754885/ public [Incubation Data] - Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments (Collaborative Research:   Calibration and application of vascular plant and aqueous microbial biomarkers to examine transformations of dissolved organic matter) Incubation experiments were conducted in the dark or using a dark/light cycle. Incubations conducted in the dark alone are classified as \\microbial, and incubations using a dark/light cycle are classified as \\coupled\\.\n\ncdm_data_type = Other\nVARIABLES:\nincubation_type (unitless)\nsite_type (unitless)\ntime_point (unitless)\ndays (days)\nhours (hours)\nExposure (hours)\nDose (MJ/m2)\nIrradiance (W/m2)\nDOC_mg_L (mg/L)\nDOC_mM (DOC M M, mM)\nFuc (nanomoles per liter (nmol/L))\nRha (nanomoles per liter (nmol/L))\nAra (nanomoles per liter (nmol/L))\nGal (nanomoles per liter (nmol/L))\nGlu (nanomoles per liter (nmol/L))\nMan (nanomoles per liter (nmol/L))\nXyl (nanomoles per liter (nmol/L))\nD_Asx (nanomoles per liter (nmol/L))\nL_Asx (nanomoles per liter (nmol/L))\nD_Glx (nanomoles per liter (nmol/L))\nL_Glx (nanomoles per liter (nmol/L))\nD_Ser (nanomoles per liter (nmol/L))\nL_Ser (nanomoles per liter (nmol/L))\nD_His (nanomoles per liter (nmol/L))\nL_His (nanomoles per liter (nmol/L))\n... (69 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_754885_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_754885/index.htmlTable https://www.bco-dmo.org/dataset/754885 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_754885.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_754885&showErrors=false&email= BCO-DMO bcodmo_dataset_754885
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_965079_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_965079_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_965079_v1/ public [Juvenile Black Sea Bass Laboratory Experiment (2022-2023)] -  (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) The northern stock of Black sea bass (BSB, Centropristis striata) has greatly expanded over the past decade, potentially due to warming Northwest Atlantic shelf waters affecting overwintering especially in juveniles. To gather better empirical data we quantified winter growth and lipid accumulation in BSB juveniles under a current ambient (2022/2023) seasonal temperature profile for eastern Long Island Sound, USA. Over the course of this study, winter mortality was low (< 16%) and average specific growth rate (SGR) followed seasonal trends (Fall → Winter → Spring) decreasing from 0.15 millimeters per day (mm d-1) (0.97 % wW d-1) to 0.01 mm d-1 (-0.03 % wW d-1), before rising to 0.03 mm d-1 (0.11 %wW d-1).\n\ncdm_data_type = Other\nVARIABLES:\nCollection_Location (unitless)\nlongitude (Longitutde, degrees_east)\nlatitude (degrees_north)\nSpecies (unitless)\nCollection_Date (unitless)\nSample_Date (unitless)\nTime_Point (unitless)\nMonth (unitless)\nTank (unitless)\nBSB_ID (unitless)\nMean_Temp (degrees Celsius)\nSD_Temp (degrees Celsius)\nDays (number of days)\nS_or_M (unitless)\nDays_Alive (number of days)\nTL_ini (degrees Celsius)\nTL_final (millimeters (mm))\nwW_ini (grams (g))\nwW_final (grams (g))\nestdW_ini (grams (g))\n... (16 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_965079_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_965079_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_965079_v1/index.htmlTable https://osprey.bco-dmo.org/dataset/965079 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_965079_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_965079_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_965079_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774628 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774628.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774628/ public [Picocyanobacteria TEP: Cell Abundance] - Cell abundance of xenic and axenic marine Prochlorococcus and Synechococcus cultures from laboratory experiments conducted in 2016 and 2017 (Aggregation of Marine Picoplankton) Cell abundance of xenic and axenic marine Prochlorococcus and Synechococcus cultures from laboratory experiments conducted in 2016 and 2017.\n\ncdm_data_type = Other\nVARIABLES:\nCulture (unitless)\nDays (count (days))\nCell_Abundance_rep1 (cells per mL)\nCell_Abundance_rep2 (cells per mL)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_774628_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774628/index.htmlTable https://www.bco-dmo.org/dataset/774628 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774628.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774628&showErrors=false&email= BCO-DMO bcodmo_dataset_774628
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774639 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774639.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774639/ public [Picocyanobacteria TEP: Suspended Aggregates] - Suspended aggregates of xenic and axenic marine Prochlorococcus and Synechococcus cultures from laboratory experiments conducted in 2016 and 2017 (Aggregation of Marine Picoplankton) Suspended aggregates of xenic and axenic marine Prochlorococcus and Synechococcus cultures from laboratory experiments conducted in 2016 and 2017.\n\ncdm_data_type = Other\nVARIABLES:\nCulture (unitless)\nDays (count (days))\nSuspended_Aggregate_Volume_Concentration_rep1 (x10^6 μm^3 per mL)\nSuspended_Aggregate_Volume_Concentration_rep2 (x10^6 μm^3 per mL)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_774639_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774639/index.htmlTable https://www.bco-dmo.org/dataset/774639 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774639.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774639&showErrors=false&email= BCO-DMO bcodmo_dataset_774639
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774646 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774646.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774646/ public [Picocyanobacteria TEP: TEP Concentration] - Transparent exopolymer particle (TEP) concentrations of xenic and axenic marine Prochlorococcus and Synechococcus cultures from laboratory experiments conducted in 2016 and 2017 (Aggregation of Marine Picoplankton) Transparent exopolymer particle (TEP) concentrations of xenic and axenic marine Prochlorococcus and Synechococcus cultures from laboratory experiments conducted in 2016 and 2017.\n\ncdm_data_type = Other\nVARIABLES:\nCulture (unitless)\nDays (count (days))\nTEP_Concentration_rep1 (ug XG per mL)\nTEP_Concentration_rep2 (ug XG per mL)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_774646_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774646/index.htmlTable https://www.bco-dmo.org/dataset/774646 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774646.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774646&showErrors=false&email= BCO-DMO bcodmo_dataset_774646
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773802 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773802.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_773802/ public [PlankDOM NA1] - Dissolved organic matter (DOM) and base-extracted particulate organic matter (BEPOM) collected from a plankton senescence experiment from water samples offshore of North Carolina (Collaborative Research: Planktonic Sources of Chromophoric Dissolved Organic Matter in Seawater) A mixed assemblage of natural phytoplankton community collected from waters offshore of North Carolina were used to create planktonic dissolved organic matter (DOM) and particulate organic matter (POM). The latter was extracted with 0.1 M NaOH to create base-extracted POM (BEPOM). Methods are reported in Kinsey et al. (2018) and Osburn et al. (2019). The medium used was: Natural Assemblage 2x filtered North Atlantic Surface water with f/2 nutrients; Whole water experiment - unfiltered North Atlantic Surface water with f/20 nutrients Irradiance ~70-100 umol photon m-2 s-1 (cool white bulbs); on roller table; diel cycle, 19 \\u00b0C\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nsample_date (unitless)\ndays (unitless)\ngrowth (unitless)\nlabel_time_rep (unitless)\nbottle_nr (unitless)\nraw_invivo_flu (arbitrary)\nbact_abund (cells per mL)\ndoc (micromoles per Liter (umol/L))\ndom_b (quinine sulfate units)\ndom_t (quinine sulfate units)\ndom_a (quinine sulfate units)\ndom_c (quinine sulfate units)\ndom_m (quinine sulfate units)\ndom_n (quinine sulfate units)\ndom_bix (unitless)\ndom_hix (unitless)\ndom_a254 (inverse meters)\ndom_a300 (inverse meters)\ndom_a320 (inverse meters)\ndom_slope (inverse micrometer)\n... (19 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_773802_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_773802/index.htmlTable https://www.bco-dmo.org/dataset/773802 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_773802.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_773802&showErrors=false&email= BCO-DMO bcodmo_dataset_773802
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_726452 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_726452.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_726452/ public [Plocamium growth and biomass] - Experimental results of Plocamium cartilagineum growth and biomass as a function of pCO2 and temperature (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae) Experimental results of Plocamium cartilagineum growth and biomass as a function of pCO2 and temperature.\n\ncdm_data_type = Other\nVARIABLES:\ntrial (unitless)\npot (unitless)\npCO2_target_range (P CO2 Target Range, unitless)\npCO2 (P CO2, microatmospheres (uatm))\ntemp (Temperature, degrees Celsius)\ndate_start (unitless)\ndate_end (unitless)\narea_t0 (square centimeters (cm^2))\narea_end (square centimeters (cm^2))\ndays (days)\nadj_growth (square centimeters/square centimeters/day  (cm^2/cm^2/day))\ngrowth_biom (milligrams/gram/day (mg/g/day))\ngrowth_dyn (milligrams/gram/day (mg/g/day))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_726452_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_726452/index.htmlTable https://www.bco-dmo.org/dataset/726452 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_726452.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_726452&showErrors=false&email= BCO-DMO bcodmo_dataset_726452
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997511_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997511_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_997511_v1/ public [Porites post-settlement experiment] - Results of an experiment on post-settlement survival for Porites corals in Palau (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?) The early life-history stages of marine invertebrates, including corals, are subject to high mortality. Numerous environmental and biological factors serve as bottlenecks, restricting recruitment and connectivity of populations. We conducted a lab experiment to determine the influence of temperature and light on post-settlement mortality of massive Porites corals in April 2023. Adult massive Porites corals were collected from six sites in Palau immediately prior to their spawning season. Collected corals were held in individual plastic containers (4.2 L; 17 x 13 x 19 cm) in ambient unfiltered flow-through seawater tanks at the Palau International Coral Reef Center (PICRC). Three days post fertilization, larvae were settled on glass microscope slides with crushed crustose coralline algae used as a settlement cue.  Slides were randomly distributed among two temperature treatments (30° C, 33° C) and two light levels (ambient, high) in a 2-way crossed design. Immediately after settlement and every two days throughout the experiment, slides were photographed individually using a Nikon D850 camera with a macro lens. Living settlers were counted in each image to track settler survival over time. Temperature and light level in each treatment were logged using Hobo pendants (Onset, Wareham, USA).\n\ncdm_data_type = Other\nVARIABLES:\nT (unitless)\nDays (unitless)\nDM (unitless)\nTemperature (degrees Celsius (°C))\nLight (unitless)\nAbbrev (unitless)\nSlide (unitless)\nSurvival (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_997511_v1/index.htmlTable https://osprey.bco-dmo.org/dataset/997511 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_997511_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_997511_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_997511_v1
log in [Recruit qPCR data] - qPCR data for Orbicella faveolata recruits throughout a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications) qPCR data for Orbicella faveolata recruits throughout symbiont acquisition laboratory experiment. Includes proportion of different Symbiodinaceae genera hosted, and symbiont-to-host cell ratios (symbiont density).  \n\nThese data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project \"Symbiont Shifts on Reefs\". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\ntank (unitless)\ntemp (unitless)\nadult (unitless)\ndays (days)\nCoral_CT_mean (unitless)\nA_CT_mean (unitless)\nB_CT_mean (unitless)\nC_CT_mean (unitless)\n... (15 more variables)\n BCO-DMO bcodmo_dataset_920860_v1
log in [Recruit survivorship and symbiont acquisition] - Survivorship and proportion of recruits infected with Symbiodiniaceae over time during a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications) Survivorship and proportion of recruits infected with Symbiodiniaceae over time during a symbiont acquisition laboratory experiment. \n\nThese data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project \"Symbiont Shifts on Reefs\". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.\n\ncdm_data_type = Other\nVARIABLES:\ntank (unitless)\ntemp (unitless)\nadult (unitless)\ndays (days)\nsurvivorship (unitless)\nproportion_infected (unitless)\n BCO-DMO bcodmo_dataset_920853_v1

 
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