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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732864.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732864 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732864.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_732864/ public [57Fe Wall Loss Experiment] - 57Fe Wall Loss Experiment data collected as part of a method development study investigating the precipitation and wall loss of labeled 57Fe when added to M9 Minimal Media (EAGER: Iron-Virus Interactions in the Ocean) This data was collected as part of a method development study investigating the precipitation and wall loss of labeled \\u2075\\u2077Fe when added to M9 Minimal Media, which is used to grow the model bacterial species Escherichia coli. The bulk media was prepared with the same components and a portion was treated with Chelex-100 to remove metals, while the other portion remained un-chelexed. Half of each treatment was spiked with labeled \\u2075\\u2077Fe and either 0.2 \\u03bcm or 0.02 \\u03bcm filtered for comparison of the dissolved and soluble fractions. The \\u2075\\u2077Fe content was monitored over four time points for one week in a shaking incubator, under the same conditions used to culture E. coli for labeling experiments.\n\ncdm_data_type = Other\nVARIABLES:\nDATE (unitless)\nSAMPLE_ID (unitless)\nDESCRIPTION (unitless)\nCHELEX (unitless)\nFe57_SPIKE (micromolar (uM))\nFILTER_SIZE (micrometers (um))\nDAY (days)\nFe56 (nanomolar (nM))\nFe57 (nanomolar (nM))\nFe57_to_Fe56 (unitless (percentage))\nNOTES (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_732864_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_732864/index.htmlTable https://www.bco-dmo.org/dataset/732864 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_732864.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_732864&showErrors=false&email= BCO-DMO bcodmo_dataset_732864
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712027 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712027.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_712027/ public [Chemical data] - Chemical data associated with field collections from the Gulf of Maine, Nauset Marsh Estuary System, and Long Island Sound (Alexandrium isotopes project) (Collaborative Research: Identification of nitrogen sources for toxic Alexandrium blooms using a novel species-specific tracer, d15N-saxitoxin) Chemical data associated with field collections from the Gulf of Maine, Nauset Marsh Estuary System, and Long Island Sound (Alexandrium isotopes project)\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nSample_ID (unitless)\nDescription (unitless)\ndepth (m)\nd15N_NO3 (D15 N NO3, per mil (0/00))\nd18O_NO3 (D18 O NO3, per mil (0/00))\nd15N_NH4 (Mole Concentration Of Ammonium In Sea Water, per mil (0/00))\nd15N_POM (D15 N POM, per mil (0/00))\nNO3 (micromoles per liter)\nNH4 (Mole Concentration Of Ammonium In Sea Water, micromoles per liter)\nPO4 (micromoles per liter)\nSilicate (Mass Concentration Of Silicate In Sea Water, micromoles per liter)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_712027_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_712027/index.htmlTable https://www.bco-dmo.org/dataset/712027 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_712027.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_712027&showErrors=false&email= BCO-DMO bcodmo_dataset_712027
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782025 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782025.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782025/ public [Chemistry and cell counts] - Chemistry and cell counts of formation fluids from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling) Chemistry and cell counts of formation fluids from North Pond\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nbioproject_id (unitless)\ncollection_date (unitless)\ndescription (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_minimum (Depth, meters)\ndepth_maximum (Depth, meters)\nCell_counts (cells per mililiter (cells/mL))\nconfidence_level_95pcnt (cells per mililiter (cells/mL))\nO2 (micromole per Liter (umol/L))\nNO3 (Mole Concentration Of Nitrate In Sea Water, micromole per Liter (umol/L))\nSi (Mass Concentration Of Silicate In Sea Water, micromole per Liter (umol/L))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_782025_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_782025_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782025/index.htmlTable https://www.bco-dmo.org/dataset/782025 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782025.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782025&showErrors=false&email= BCO-DMO bcodmo_dataset_782025
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_928039_v1/ public [Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux) Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.\n\ncdm_data_type = Other\nVARIABLES:\nBottle_ID (unitless)\nTreatment (unitless)\nTime_h (hour (h))\nMicromonas_cells_ml (cells per milliliter (cell/ml))\nBacteria_cells_ml (cells per milliliter (cell/ml))\nNH4_uM (micromolar (uM))\nNO3_uM (micromolar (uM))\nPO4_uM (micromolar (uM))\nNCBI_Sample_ID (unitless)\nAccession (unitless)\nBioProject (unitless)\nOrganism (unitless)\nTaxonomy_ID (unitless)\nDescription (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_928039_v1/index.htmlTable https://www.bco-dmo.org/dataset/928039 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_928039_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_928039_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_928039_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818765.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818765 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_818765/ public [Diatom Matrix RNAseq] - Transcriptome data for bacteria collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture (Metabolic Currencies of the Ocean Carbon Cycle) Transcriptome data for bacteria Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, Polaribacter dokdonensis MED152, and Dokdonia MED134 collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture. The sequence data description for PRHNA448168 is at https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA448168.\n\ncdm_data_type = Other\nVARIABLES:\nSample_Name (unitless)\nNCBI_Bioproject_Accession (unitless)\nBioSample (Bio Sample, unitless)\nDescription (unitless)\nreplicate (unitless)\nNCBI_Genome_Accession (unitless)\ntaxon_microbe (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_818765_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_818765/index.htmlTable https://www.bco-dmo.org/dataset/818765 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_818765.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_818765&showErrors=false&email= BCO-DMO bcodmo_dataset_818765
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753594 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753594.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753594/ public [dissolved O2] - Depth profiles of dissolved O2 saturation and isotopologues from the R/V Yellowfin and R/V Kilo Moana from 2016-09-14 to 2017-08-28 (Collaborative Research:  New Constraints on Marine Oxygen Cycling) Seawater was sampled from Niskin bottles associated with CTD casts on each cruise. Water for these dissolved gas isotope samples was the first to be sampled from a given Niskin bottle. When possible, bottles from the same cast were sampled, but depth profiles often came from separate casts at the same site.\n\ncdm_data_type = Other\nVARIABLES:\ndescription (unitless)\ndate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nO2_O2sat (unitless)\nd18O (D18 O, parts per thousand)\nD17O (D17 O, parts per million)\nD35 (parts per thousand)\nD36 (parts per thousand)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_753594_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_753594_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753594/index.htmlTable https://www.bco-dmo.org/dataset/753594 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753594.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753594&showErrors=false&email= BCO-DMO bcodmo_dataset_753594
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757485 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757485.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_757485/ public [Fe-Labeling Expt: E.coli and phage T4 or T5] - Iron concentrations of phage from experiments of iron-labelled E. coli infected with T4 and T5 bacteriophage, 2018 and 2019. (EAGER: Iron-Virus Interactions in the Ocean) This data was collected as part of a study investigating the source of iron to bacteriophage (phage for short, or viruses that infect and kill bacteria) progeny. Evidence from a phage that infects E. coli shows iron incorporated into the tail fiber structure. This study aims at identifying whether the source of the iron is environmental or bacterially derived. E. coli bacterial cultures were grown in minimal media spiked with 10 \\u00b5M 57FeSO4 then infected with phage T4 or T5. The phages were purified by methods of centrifugation, filtration, density-dependent ultracentrifugation, and dialyzing. The resulting phage fractions were quantified by SYBR epifluorescence microscopy and metal concentrations were measured on an ELEMENT XR ICP-MS.\n\ncdm_data_type = Other\nVARIABLES:\ndate_utc (unitless)\nexpt_round (unitless)\nsample (unitless)\ndescription (unitless)\nFe_56_nM (Fe 56 N M, nanoMolar)\nFe_57_nM (Fe 57 N M, nanoMolar)\nvolume (liters)\nFe_56_nmol (nanomoles)\nFe_57_nmol (nanomoles)\nCu_63_nmol (nanomoles)\nZn_66_nmol (nanomoles)\nNi_60_nmol (nanomoles)\nPb_208_nmol (nanomoles)\nbact_cells_ml (cells/milliliter)\nphage_VPL_ml (virus-like particles/milliliter)\nFe_57_atoms_per_phage (atoms)\nnotes_expt (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_757485_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_757485/index.htmlTable https://www.bco-dmo.org/dataset/757485 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_757485.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_757485&showErrors=false&email= BCO-DMO bcodmo_dataset_757485
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_628993.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_628993 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_628993.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_628993/ public [Incubation in diffuse flow vent fluids - Crab Spa] - Results from shipboard high-pressure incubations of diffuse flow vent fluids collected from the Crab Spa and Alvinella sites at East Pacific Rise during the AT26-10 expedition, Jan. 2014 (Microbial Communities at Deep-Sea Vents project) (An Integrated Study of Energy Metabolism, Carbon Fixation, and Colonization Mechanisms in Chemosynthetic Microbial Communities at Deep-Sea Vents) This dataset includes results from shipboard high-pressure incubations of\ndiffuse flow vent fluids collected from the Crab Spa (9.8398\\u00ba N,\n104.2913\\u00ba W) and Alvinella (9.8398\\u00ba N, 104.2915\\u00ba W) sites at\nEast Pacific Rise during the AT26-10 oceanographic expedition in January 2014.\nReported parameters include dates and time elapsed, flow rate, temperature,\npressure, and pH, and concentrations of NO3, NH4, H2, H2S, CH4.\n \nVent fluids used in shipboard incubations were corrected from diffuse flow\nvent sites at the East Pacific Rise (2503 m): Crab Spa (9.8398\\u00ba N,\n104.2913\\u00ba W) and Alvinella (9.8398\\u00ba N, 104.2915\\u00ba W) (see\ndescription in McNichol et al. [2016]). Fluids were collected using isobaric\ngas-tight samplers [Seewald et al., 2002] prior to their transfer to the\nshipboard continuous culture system [Foustoukos and Perez-Rodriguez, 2015].\nHere, high-pressure incubations (250 bars) were conducted at mesophilic (30\n\\u00baC) and thermophilic (50 \\u00baC) conditions to constrain the function\nand metabolic rates of denitrifying and DNRA microbial communities residing at\nCrab Spa and Alvinella, respectively. To enhance the activity of nitrate-\nrespiring anaerobic bacteria, an NO3- (5 mm) and H2(aq) (1.30 mM)-enriched\nmedium was introduced in the high-pressure incubations under strictly\nanaerobic conditions. Dissolved HCO3- (7.3 mm, 13C labeled) was used as added\ncarbon source. Vent fluids were introduced at a flow rate of 0.042 mL/min,\nwhile growth medium was added at a rate of 0.0042 mL/min. The two sets of\nexperiments were performed for 356 (Crab Spa) and 50 hours (Alvinella). Direct\ncell counts were conducted by staining cells with 0.1% acridine orange and\ncounting them with a fluorescence microscope. 15N/14N isotopic analysis of the\nNO3-, NH4+ and biomass were conducted with a Thermo Scientific Delta VPlus\nmass spectrometer and CE Instruments NA 2500 series elemental analyzer (EA).\n \nReferences:\n \nFoustoukos, D., and I. Perez-Rodriguez (2015), A continuous culture system for\nassessing microbial activities in the piezosphere, Applied and Environmental\nMicrobiology, 81(19), 6850-6856.\n \nMcNichol, J., S. P. Sylva, F. Thomas, C. D. Taylor, S. M. Sievert, and J. S.\nSeewald (2016), Assessing microbial processes in deep-sea hydrothermal systems\nby incubation at in situ temperature and pressure, Deep Sea Research Part I:\nOceanographic Research Papers, 115, 221-232.\n \nSeewald, J. S., K. W. Doherty, T. R. Hammar, and S. P. Liberatore (2002), A\nnew gas-tight isobaric sampler for hydrothermal fluids, Deep-Sea Research,\nPart I: Oceanographic Research Papers, 49(1), 189-196.\n\ncdm_data_type = Other\nVARIABLES:\ndescription (unitless)\n... (15 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_628993_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_628993/index.htmlTable https://www.bco-dmo.org/dataset/628993 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_628993.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_628993&showErrors=false&email= BCO-DMO bcodmo_dataset_628993
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658497.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658497 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658497.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658497/ public [Isolation culturing and sequencing of bacteria and viruses] - Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project) (How can bacterial viruses succeed in the marine environment?) Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project)\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nenv_biome (unitless)\ngeo_loc_name (unitless)\norganism_type (unitless)\ncollection_date (unitless)\nisolation_source (unitless)\nsample_name (unitless)\norganism (unitless)\nstrain (unitless)\nisolate (unitless)\nhost (unitless)\nlab_host (unitless)\nsample_type (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntemp (Temperature, degrees celsius)\nordinal_day_of_isolation (unitless)\ndescription (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_658497_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_658497_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658497/index.htmlTable https://www.bco-dmo.org/dataset/658497 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658497.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658497&showErrors=false&email= BCO-DMO bcodmo_dataset_658497
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734442 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734442.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_734442/ public [MBRS in situ temperature] - In situ temperature and light time-series from HOBO data loggers, Belize Mesoamerican Barrier Reef System (MBRS), Nov. 2014 - Oct. 2015 (Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales) This dataset contains temperature and light data obtained from in situ HOBO V2 data loggers situated at each study site. These data were used in a coral study in Baumann et al. (2016) DOI: 10.1371/journal.pone.0162098.\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntype (unitless)\ndescription (unitless)\ntime (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)\ndate (unitless)\nmonth (unitless)\nday (unitless)\nyear (unitless)\ntime2 (Time, unitless)\nhobo_logger_temp (degrees Celsius)\nhobo_pendant_temp (degrees Celsius)\nlight (lumens/ft2)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_734442_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_734442_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_734442/index.htmlTable https://www.bco-dmo.org/dataset/734442 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_734442.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_734442&showErrors=false&email= BCO-DMO bcodmo_dataset_734442
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_733680 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_733680.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_733680/ public [MBRS reef sites] - Site locations for coral thermal response study at Belize Mesoamerican Barrier Reef System (MBRS), 2003-2015 (Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales) Site locations for coral thermal response study at Belize Mesoamerican Barrier Reef System (MBRS), 2003-2015.\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\ndescription (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncomments (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_733680_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_733680_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_733680/index.htmlTable https://www.bco-dmo.org/dataset/733680 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_733680.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_733680&showErrors=false&email= BCO-DMO bcodmo_dataset_733680
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913566_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913566_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_913566_v1/ public [Particulate Organic Carbon and Particulate Nitrogen] - Particulate organic carbon and particulate nitrogen from samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019 (Spring Blooms of Sea Ice Algae Along the Western Antarctic Peninsula: Effects of Warming and Freshening on Cell Physiology and Biogeochemical Cycles.) This dataset includes concentrations of particulate organic carbon (POC) and particulate nitrogen (PN) from samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nDescription (unitless)\nStation_Label (unitless)\nparticulate_organic_carbon_av (moles per liter (mol/L))\nparticulate_organic_carbon_stdev (moles per liter (mol/L))\nparticulate_nitrogen_av (moles per liter (mol/L))\nparticulate_nitrogen_stdev (moles per liter (mol/L))\nno_replicates (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_913566_v1/index.htmlTable https://www.bco-dmo.org/dataset/913566 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_913566_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_913566_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_913566_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913222_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913222_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_913222_v1/ public [Photosynthetic Pigments] - Photosynthetic pigments from sea ice samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019 (Spring Blooms of Sea Ice Algae Along the Western Antarctic Peninsula: Effects of Warming and Freshening on Cell Physiology and Biogeochemical Cycles.) This dataset includes concentrations of photosynthetic pigments from sea ice samples at various stages of melt collected during the spring melt of November and December 2019 from coastal waters along the Western Antarctic Peninsula. Samples were collected during the R/V Nathaniel B. Palmer cruise NBP1910. Pigments were determined by high-performance liquid chromatography (HPLC).\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nDescription (unitless)\nSample_id (unitless)\nReplicate (unitless)\nChl_c3 (micrograms per liter (ug/L))\nChl_c1c2 (micrograms per liter (ug/L))\nPerid (micrograms per liter (ug/L))\nButFuc19 (micrograms per liter (ug/L))\nFuco (micrograms per liter (ug/L))\nHexFuc19 (micrograms per liter (ug/L))\nNeo (micrograms per liter (ug/L))\nPrasino (micrograms per liter (ug/L))\nViola (micrograms per liter (ug/L))\nDiad (micrograms per liter (ug/L))\nAnther (micrograms per liter (ug/L))\nAllox (micrograms per liter (ug/L))\nDiat (micrograms per liter (ug/L))\nLutein (micrograms per liter (ug/L))\nZeax (micrograms per liter (ug/L))\nGyro (micrograms per liter (ug/L))\nChl_b (micrograms per liter (ug/L))\nChla_Allomer (micrograms per liter (ug/L))\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_913222_v1/index.htmlTable https://www.bco-dmo.org/dataset/913222 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_913222_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_913222_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_913222_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665407 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665407.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_665407/ public [Presence and absence of iron and light-related functional genes] - Presence and absence of iron and light-related functional genes collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project) (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators) Presence and absence of iron and light-related functional genes collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project)\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\ndescription (unitless)\nprotein (unitless)\nRPKM (unitless)\nevalue (unitless)\nKO_num (unitless)\naccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_665407_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_665407/index.htmlTable https://www.bco-dmo.org/dataset/665407 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_665407.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_665407&showErrors=false&email= BCO-DMO bcodmo_dataset_665407
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717687.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717687 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717687.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_717687/ public [Rosette Samples - HRS1415] - CTD data and analyses of bottles from CTD rosette samples collected on R/V Hugh R. Sharp cruise HRS1415 in August 2014 (The role of soluble Mn(III) in the biogeochemical coupling of the Mn, Fe and sulfur cycles) CTD data and analyses of bottles from CTD rosette samples collected on cruise HRS1415.\n\ncdm_data_type = Other\nVARIABLES:\nCast (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate (unitless)\ntime_local (unitless)\ntime_GMT (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nDescription (unitless)\nBottle_Num (unitless)\ndepth (m)\ntemp (Temperature, degrees Celsius)\nsal (unitless)\nCTD_O2 (micromolar (uM))\nO2_sat_100pcnt (micromolar (uM))\nO2_sat (unitless (percent))\nfluor_chla (volts)\nTA (microles per kilogram (uM/kg))\nDIC (microles per kilogram (uM/kg))\npH (Sea Water Ph Reported On Total Scale, unitless (pH scale))\nParticulate_MnOx (Particulate Mn Ox, micromolar (uM))\nParticulate_MnOx_stdev (Particulate Mn Ox Stdev, micromolar (uM))\nDissolved_Mn2plus (micromolar (uM))\nDissolved_Mn2plus_stdev (micromolar (uM))\nDissolved_Mn3plus (micromolar (uM))\nDissolved_Mn3plus_stdev (micromolar (uM))\nDissolved_MnT (Dissolved Mn T, micromolar (uM))\n... (12 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_717687_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_717687_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_717687/index.htmlTable https://www.bco-dmo.org/dataset/717687 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_717687.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_717687&showErrors=false&email= BCO-DMO bcodmo_dataset_717687
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658340.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658340 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658340/ public [Sample numbers and associated data for bacteria sequence mapping] - Sample numbers, barcode information, primer information and project name from bacteria samples collected in the Caribbean during 2013 (Contagious coral diseases project) (Are coral diseases contagious?) Sample numbers, barcode information, primer information and project name from bacteria samples collected in the Caribbean during 2013 (Contagious coral diseases project)\n\ncdm_data_type = Other\nVARIABLES:\nproject_name (unitless)\nlinker_primer_sequence (unitless)\nsample_id (unitless)\nbarcode_sequence (unitless)\nbarcode_name (unitless)\ndescription (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_658340_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658340/index.htmlTable https://www.bco-dmo.org/dataset/658340 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658340.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658340&showErrors=false&email= BCO-DMO bcodmo_dataset_658340
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2329 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2329.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2329/ public [station_plans] - Broad-scale station numbers and locations from the US-GLOBEC Georges Bank project (U.S. GLOBEC Georges Bank) Broad-scale station numbers and locations from the US-GLOBEC Georges Bank project\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\ndescription (n/a)\nstation (n/a)\nlat_deg (Latitude, degrees)\nlat_min (Latitude, minutes)\nlat_ddmm_tt (Latitude, ddmm.tt)\nlon_deg (Longitude, degrees)\nlon_min (Longitude, minutes)\nlon_ddmm_tt (Longitude, ddmm.tt)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_w (Depth, meters)\ndistance (nautical miles)\npriority (n/a)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_2329_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2329_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2329/index.htmlTable https://www.bco-dmo.org/dataset/2329 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2329.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2329&showErrors=false&email= BCO-DMO bcodmo_dataset_2329
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719970 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_719970/ public [Switch RNAseq] - Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study (Bacterial Taxa that Control Sulfur Flux from the Ocean to the Atmosphere) Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study. This dataset contains the processed, QC'ed, normalized sequence data. The full raw data file is deposited in the NCBI BioProject database under accession PRJNA381627.\n\ncdm_data_type = Other\nVARIABLES:\nLocus_Tag (unitless)\nDescription (unitless)\nDay7_R1 (TPM (transcripts per million))\nDay7_R2 (TPM (transcripts per million))\nDay9_R1 (TPM (transcripts per million))\nDay9_R2 (TPM (transcripts per million))\nDay12_R1 (TPM (transcripts per million))\nDay12_R2 (TPM (transcripts per million))\nDay15_R1 (TPM (transcripts per million))\nDay15_R2 (TPM (transcripts per million))\nDay18_R1 (TPM (transcripts per million))\nDay18_R2 (TPM (transcripts per million))\nDay23_R1 (TPM (transcripts per million))\nDay23_R2 (TPM (transcripts per million))\nDay30_R1 (TPM (transcripts per million))\nDay30_R2 (TPM (transcripts per million))\nDay37_R1 (TPM (transcripts per million))\nDay37_R2 (TPM (transcripts per million))\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_719970_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_719970/index.htmlTable https://www.bco-dmo.org/dataset/719970 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_719970.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_719970&showErrors=false&email= BCO-DMO bcodmo_dataset_719970
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_681997 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_681997/ public [Temporal genetic patterns in plankton] - Data from: Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It’s about time: Insights into temporal genetic patterns in oceanic zooplankton from biodiversity indices. (Basin-scale genetics of marine zooplankton) This dataset\\u00a0consists of mitochondrial sequence data and specimen\ninformation for two species of copepods, Haloptilus longicornis and\nPleuromamma xiphias, collected at an open ocean time series site in the North\nPacific Subtropical Gyre (station ALOHA, 22.45N, 158W) during 11 of the\nroutine Hawai'i Ocean Time-series (HOT) research cruises from September of\n2012 to October of 2013 (HOT-246 to HOT-256).\\u00a0Data for Haloptilus\nlongicornis include\\u00a0a 546 base-pair fragment of mitochondrial cytochrome\nc oxidase subunit II for each of 483 individuals (mean of 44 animals per\ncruise). Data for Pleuromamma xiphias include\\u00a0a 551 base-pair fragment of\nmitochondrial cytochrome c oxidase subunit I for each of 510 individuals (mean\nof 46 animals per cruise). Information is also provided on the HOT cruise\nnumber, date, and specific tow from which each individual was collected. Life\nstage and sex of each animal are also noted when identifiable\n \nThese data are associated with the forthcoming publication:  \n Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It\\u2019s about\ntime: Insights into temporal genetic patterns in oceanic zooplankton from\nbiodiversity indices.\\u00a0 Limnology and Oceanography \\u00a0\n \nThe unique haplotypes in these data are also available under NCBI accession\nnumbers KY560470 - KY560514 [Haloptilus longicornis], KY560515 -\nKY560565\\u00a0[Pleuromamma xiphias].\n \nThe following files have been included in this dataset (note that the sequence\nIDs in these files differ from the NCBI sequence IDs):  \n HOT-HALO.fasta: A fasta-formatted text file containing sequences for a\nportion of the mitochondrial cytochrome c oxidase subunit II gene (COII; 546\nbp) for 483 Haloptilus longicornis individuals collected at Station ALOHA.\n \nHOT-PLXI.fasta: A fasta-formatted text file containing sequences for a portion\nof the mitochondrial cytochrome c oxidase subunit I gene (COI; 551 bp) for 510\nPleuromamma xiphias individuals collected at Station ALOHA.\n \nHALO.csv and PLXI.csv: Converted to csv from an Excel file consisting of one\nworksheet for Haloptilus longicornis and one worksheet for Pleuromamma\nxiphias. In each worksheet, column headings designate:  \n sample_id: the sample ID number associated with the original organism\ncollected, DNA extraction, and PCR amplification.  \n sequence_id: the sample ID number associated with sequences analysed for the\nproject.  \n genus: Genus of the collected organism.  \n species: Species of the collected organism.  \n cruise: The cruise number for the Hawai'i Ocean Time Series (HOT) cruise on\nwhich the specimen was collected.  \n tow: The net tow number on which the specimen was collected.  \n collection_date: The date on which the specimen was collected, formatted as\nyyyy-mm-dd.  \n stage_sex: The life stage (Copepodite or Adult) of the individual, and the\nsex (Copepodite, Female, Male).  \n stage: The life stage (Copepodite or Adult) of the individual. Column added\nby BCO-DMO\\u00a0from the original stage_sex column for ease of use.  \n sex: The sex (Copepodite, Female, or Male) of the individual.\\u00a0Column\nadded by BCO-DMO\\u00a0from the original stage_sex column for ease of use.  \n mtCO*_sequence: The mtDNA sequence (COII for Haloptilus longicornis; COI for\nPleuromamma xiphias) associated with that individual. This sequence matches\nthe sequence associated with the Sequence ID number in the respective fasta\nfile.\n\ncdm_data_type = Other\nVARIABLES:\nfile_link (unitless)\ndescription (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_681997_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_681997/index.htmlTable https://www.bco-dmo.org/dataset/681997 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_681997.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_681997&showErrors=false&email= BCO-DMO bcodmo_dataset_681997
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2468 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2468/ public [w0008 seasoar CTD] - SeaSoar CTD Data from R/V Wecoma cruise W0008 in the Northeast Pacific in 2000 as part of the U.S. GLOBEC program (NEP project) (U.S. GLOBEC Northeast Pacific) SeaSoar CTD data from R/V Wecoma cruise W0008 in the Northeast Pacific in 2000 as part of the U.S. GLOBEC-NEP program.\n\ncdm_data_type = Other\nVARIABLES:\nlink\ndescription\n https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_2468_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2468/index.htmlTable https://www.bco-dmo.org/dataset/2468 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2468.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2468&showErrors=false&email= BCO-DMO bcodmo_dataset_2468

 
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