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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_715422 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_715422.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_715422/ public [Biodiversity Experiments] - Biodiversity experiments: Effects of diversity in feeding trials, conducted at Bodgea Marine Laboratory, using detritus from eelgrass (Zostera marina) genotypes (clones) as a food source and either one or a combination of invertebrate grazers (Connecting genetic diversity to ecosystem functioning: links between genetic diversity, relatedness and trait variation in a seagrass community) Seagrass meadows are among the world's most productive ecosystems, and as in many other systems, genetic diversity is correlated with increased production. However, only a small fraction of seagrass production is directly consumed, and instead much of the secondary production is fueled by the detrital food web. Here, we study the roles of plant genetic diversity and grazer species diversity on detrital consumption in California eelgrass Zostera marina meadows. We used three common mesograzers\\u2014an amphipod, Ampithoe lacertosa, an isopod, Idotea resecata, and a polychaete, Platynereis bicanaliculata. In a series of five independent experiments, we manipulated grazer species diversity and number of eelgrass clones and measured the resulting detrital consumption. Under monospecific grazer assemblages, plant genetic identity but not diversity influenced detritus consumption. However, more realistic, diverse mesoconsumer communities combined with high plant-detrital genotypic diversity resulted in greater consumption and grazer survival. These data are illustrated in figures 4 and 5 Reynolds et al., 2017 (DOI:10.1111/oik.04471).\n\ncdm_data_type = Other\nVARIABLES:\nConsumer (unitless)\nNumber_of_genotypes (unitless)\nFeeding_rate_mg_day (milligrams per day)\nexperiment (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_715422/index.htmlTable https://www.bco-dmo.org/dataset/715422 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_715422.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_715422&showErrors=false&email= BCO-DMO bcodmo_dataset_715422
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777144 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777144.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_777144/ public [Carbonate Chemistry - pCO2 x DO effects on Menidia menidia] - Carbonate chemistry data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) Coastal ecosystems experience substantial natural fluctuations in pCO2 and dissolved oxygen (DO) conditions on diel, tidal, seasonal and interannual timescales. Rising carbon dioxide emissions and anthropogenic nutrient input are expected to increase these pCO2 and DO cycles in severity and duration of acidification and hypoxia. How coastal marine organisms respond to natural pCO2 \\u00d7 DO variability and future climate change remains largely unknown. Here, we assess the impact of static and cycling pCO2 \\u00d7 DO conditions of various magnitudes and frequencies on early life survival and growth of an important coastal forage fish, Menidia menidia. Static low DO conditions severely decreased embryo survival, larval survival, time to 50% hatch, size at hatch and post-larval growth rates. Static elevated pCO2 did not affect most response traits, however, a synergistic negative effect did occur on embryo survival under hypoxic conditions (3.0 mg L-1). Cycling pCO2 \\u00d7 DO, however, reduced these negative effects of static conditions on all response traits with the magnitude of fluctuations influencing the extent of this reduction. This indicates that fluctuations in pCO2 and DO may benefit coastal organisms by providing periodic physiological refuge from stressful conditions, which could promote species adaptability to climate change.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nExperiment_descrip (unitless)\nTreatment (unitless)\nCycling_Pattern (unitless)\nMetric (unitless)\nMeasured_pH (Measured P H, pH scale, NIST)\nMeasured_pH_SD (Measured P H SD, pH scale, NIST)\nMeasured_DO (milligrams per liter (mg L-1))\nMeasured_DO_SD (milligrams per liter (mg L-1))\npCO2 (P CO2, microatmospheres (uatm))\npCO2_SD (P CO2 SD, microatmospheres (uatm))\nAT (micromoles per kilogram (umol kg-1))\nAT_SD (micromoles per kilogram (umol kg-1))\n... (4 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_777144/index.htmlTable https://www.bco-dmo.org/dataset/777144 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_777144.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_777144&showErrors=false&email= BCO-DMO bcodmo_dataset_777144
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732818.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732818 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732818.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_732818/ public [CO2 x temperature effects on Menidia menidia offspring] - CO2 × temperature specific early life survival and growth of Menidia menidia assessed by 5 factorial experiments (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) In five individual rearing experiments, wild-caught M. menidia adults were spawned to test offspring sensitivity to factorial combinations of pCO2 (nominal: 400, 2200, 4000, and 6000 \\u00b5atm) and temperature (17, 20, 24, and 28 \\u00b0C) through measurements of early-life survival and growth. For experiment 1, adults were collected from Poquot Beach (40.947376, -73.10258), and the experiment took place at Stony Brook University\\u2019s Flax Pond Marine Laboratory. For experiments 2\\u20135, spawning adults were collected from Mumford Cove (41.321526, -72.015247), and experiments were conducted in the Rankin Seawater Facility at University of Connecticut\\u2019s Avery Point campus. The experiments quantified two survival and two growth traits for each replicate and CO2 \\u00d7 temperature treatment; embryo survival (fertilization to 1 dph), larval survival (1 dph to experiment termination), size (SL) at hatch (1 dph), and growth rate ((SL at end of experiment \\u2013 SL 1dph)/number days reared post hatch). These data are published in: Murray, C.S., and Baumann, H. (2018) You Better Repeat It: Complex CO2 \\u00d7 Temperature Effects in Atlantic Silverside Offspring Revealed by Serial experimentation. Diversity. doi:10.3390/d10030069.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nspecies (unitless)\nadult_collection_site (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntank (unitless)\nreplicate (unitless)\ntemperature (degrees Celsius)\npH (Sea Water Ph Reported On Total Scale, pH NBS)\npCO2 (P CO2, atm)\nfertilization_date (unitless)\nhatch_sample_date (unitless)\nhatch_sample_age (days)\nfinal_sample_date (unitless)\nfinal_sample_age (days)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_732818_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_732818/index.htmlTable https://www.bco-dmo.org/dataset/732818 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_732818.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_732818&showErrors=false&email= BCO-DMO bcodmo_dataset_732818
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_933832_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_933832_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_933832_v1/ public [Coral lesion frequencies and sizes after fish feces treatment] - Lesion frequencies and sizes after fish feces treatment on coral samples collected on the north shore of Mo’orea, French Polynesia, Oct 2020 to Jun 2021 (CAREER: Testing the effects of predator-derived feces on host symbiont acquisition and health) This datafile contains frequencies and sizes (number of polyps killed) developed in coral tissues after the application and removal of fish feces to test whether fish from different guilds affect coral health in distinct ways.There were five treatments: fresh feces from a corallivorous butterflyfish (FC); fresh feces from a grazer/detritivore (FG); sterilized feces from a corallivorous butterflyfish (SC); sterilized feces from a grazer/detritivore (SG); no-feces control (C). For the fresh feces treatments (FC, FG), we applied 100 µl of fresh feces isolated from the hindgut of the butterflyfish Chaetodon ornatissimus (FC) or the grazer/detritivore Ctenochaetus striatus (FG) directly onto each coral fragment. For the sterilized feces treatments (SC, SG), fecal pellets were sterilized in a pressure cooker for 40 minutes at 120°C and then applied in the same manner as fresh feces. The experiment ran for ~22 hours. The experiment was conducted in three iterations in Mo'orea, French Polynesia, over two years (2020, 2021).\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nCollection_Date (unitless)\nExperiment (unitless)\nTreatment (unitless)\nColony (unitless)\nReplicate (unitless)\nHealth (unitless)\nDead_Polyps (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_933832_v1/index.htmlTable https://www.bco-dmo.org/dataset/933832 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_933832_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_933832_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_933832_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_472032 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_472032.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_472032/ public [Data Set 3A: Utilization of dissolved organic carbon by a natural bacterial community as a function of pCO2] - 3A: Removal of organic carbon by natural bacterioplankton communities as a function of pCO2 from laboratory experiments between 2012 and 2016 (Will high CO2 conditions affect production, partitioning and fate of organic matter?) Factors that affect the removal of organic carbon by heterotrophic bacterioplankton can impact the rate and magnitude of organic carbon loss in the ocean through the conversion of a portion of consumed organic carbon to CO2. Through enhanced rates of consumption, surface bacterioplankton communities can also reduce the amount of dissolved organic carbon (DOC) available for export from the surface ocean. The present study investigated the direct effects of elevated pCO2 on bacterioplankton removal of several forms of DOC ranging from glucose to complex phytoplankton exudate and lysate, and naturally occurring DOC. Elevated pCO2 (1000 \\u2013 1500 ppm) enhanced both the rate and magnitude of organic carbon removal by bacterioplankton communities compared to low (pre-industrial and ambient) pCO2 (250 \\u2013 ~400 ppm). The increased removal was largely due to enhanced respiration, rather than enhanced production of bacterioplankton biomass.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nbottle_number (unitless)\ndoc_addition (unitless)\ntarget_pCO2 (Target P CO2, parts per million (ppm))\ntime_point (unitless)\ntime_days (unitless)\ndate (unitless)\nbact_abun_x10e6_avg (cells per milliliter)\nbact_abun_x10e6_stderr (cells per milliliter)\nbact_abun_x10e6_stdev (cells per milliliter)\ntoc_avg (micromoles per liter (uM))\ntoc_stderr (micromoles per liter (uM))\ntoc_stdev (micromoles per liter (uM))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_472032_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_472032/index.htmlTable https://www.bco-dmo.org/dataset/472032 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_472032.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_472032&showErrors=false&email= BCO-DMO bcodmo_dataset_472032
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872323_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_872323_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_872323_v1/ public [Delaware Bay Oyster Samples] - Delaware Bay oyster archived tissues (SeaGo project) (Collaborative Research: Spatial analysis of genetic differences in salinity tolerance resulting from rapid natural selection in estuarine oysters) The Selection along Estuarine Gradients in Oysters (SEGO) project is a collaborative NSF-funded effort to measure and understand the dynamics of short term adaptive change at small spatial scale. We focused on eastern oysters as an example of a common marine life history – high fecundity, complex life cycle with early larval dispersal, and sedentary (sessile for oysters) life after larval settlement. \n\nThe data assembled in “NSF oyster tissues BCO-DMO” are collections made over three years for two types of genomic analysis: (1) annual adult samples collected along the axis of the Delaware Bay estuary to capture a gradient in potentially stressful low salinities, (2) adult samples collected from mid-bay for experimental low-salinity challenge experiments, and (3) spat and broodstock collected for low salinity challenge experiments directly on wild spat or on larval progeny of broodstock collected from low vs. moderate salinity, respectively. Transect adults were collected by dredge in 2018, 2019 and 2021 from the same 5 subset of sites, each year, that the Rutgers Haskin lab consistently monitors every year to manage the oyster fishery. By piggy backing on the Haskin monitoring effort, the SEGO project has benefited from the long term data and deep understanding that Rutgers scientists have built about the Delaware Bay oyster population. 2021 was an exception because oyster juveniles (spat) were found at three additional sites and collected and analyzed. Two replicate challenge experiments on adults were accomplished in 2019 and 2020 using similar-size oysters collected from the highest oyster density part of the Delaware Bay population where environmental variation seems to generate the least mortality. Full details on the challenge experiments, and genomic comparison of survivors vs. nonsurvivors, is being prepared for publication. \n\nThe analytical context involved low salinity challenge experiments on wild collected spat in 2020 – those methods and results are in press in Journal of Shellfish Research. Finally, broodstock collected in low vs. moderate salinity regions of the estuary were spawned to conduct a low salinity challenge experiment on their larvae, but larval performance and survival was too low for meaningful results.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\n... (17 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_872323_v1/index.htmlTable https://www.bco-dmo.org/dataset/872323 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_872323_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_872323_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_872323_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_944277_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_944277_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_944277_v1/ public [Dissolved Inorganic Nutrients] - Dissolved inorganic nutrients from two microcosm incubation experiments conducted on sample water collected from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism) Dissolved inorganic nutrients were collected for two microcosm incubation experiments. Sample water originated from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60 liters, conducted in biological duplicates under three light treatment incubations: 12-hour light-dark cycle of photosynthetically active radiation (PAR), 12-hour light-dark cycle of UV-B radiation, or darkness. Samples were collected from the microcosms in duplicate every few days for over one month to examine how light and the resulting microbial activity altered the concentrations of dissolved inorganic nutrients (total dissolved nitrate and nitrite or NOx, ammonium or NH4, and soluble reactive phosphorus or SRP) over time. Concentrations of these inorganic nutrients were quantified via colorimetric assays on a Genesys 10S UV-Vis spectrophotometer or Tecan Infinite 200Pro plate reader.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nDate_Start (unitless)\nIncubation_Day (days)\nTreatment (unitless)\nTank_ID (unitless)\nReplicate (unitless)\nNOx (micromolar (uM))\nNH4 (micromolar (uM))\nSRP (micromolar (uM))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_944277_v1/index.htmlTable https://www.bco-dmo.org/dataset/944277 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_944277_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_944277_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_944277_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808402.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808402 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808402.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_808402/ public [Domoic acid assimilation in copepods] - Domoic acid assimilation in copepods from experiments conducted using water samples collected in northern Gulf of Mexico in 2019 (The biotic and abiotic controls on the Silicon cycle in the northern Gulf of Mexico) Domoic acid assimilation in copepods by consuming organic polymers containing domoic acid.  Results from lab experiments designed to investigate the role of organic polymers in trophic transfer of domoic acid, using Acartia tonsa as a model organism.  Water samples were collected in the northern Gulf of Mexico in 2019.\n\ncdm_data_type = Other\nVARIABLES:\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate (unitless)\ntime2 (Time, unitless)\nExperiment (unitless)\nTreatment (unitless)\nReplicate_bottle (unitless)\nNum_copepods (integer)\ncDA_mass (C DA Mass, nanograms (ng))\ncDA_indiv (C DA Indiv, picograms (pg) per copepod)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_808402_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_808402/index.htmlTable https://www.bco-dmo.org/dataset/808402 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_808402.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_808402&showErrors=false&email= BCO-DMO bcodmo_dataset_808402
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808413 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808413.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_808413/ public [Field domoic acid and copepods] - Domoic acid assimilation in copepods by consuming organic polymers and Pseudo-nitzschia from experiments conducted using water samples collected in northern Gulf of Mexico in 2017 and 2018. (The biotic and abiotic controls on the Silicon cycle in the northern Gulf of Mexico) Domoic acid assimilation in copepods by consuming organic polymers and Pseudo-nitzschia. Results from experiments designed to investigate the contribution of organic polymers and Pseudo-nitzschia to domoic acid trophic transfer.  Water samples were collected in the northern Gulf of Mexico in 2017 and 2018.\n\ncdm_data_type = Other\nVARIABLES:\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate (unitless)\ntime2 (Time, unitless)\nExperiment (unitless)\nTreatment (unitless)\nReplicate_bottle (unitless)\ndDA_conc (D DA Conc, micrograms (µg) per liter (L))\npDAa_conc (P DAa Conc, nanograms (ng) per liter (L))\nCell_tox (picograms (pg) per cell)\nPnitz_density (cells per liter)\nDA_cop_indiv (picograms (pg) per copepod)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_808413_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_808413/index.htmlTable https://www.bco-dmo.org/dataset/808413 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_808413.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_808413&showErrors=false&email= BCO-DMO bcodmo_dataset_808413
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709762 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709762.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_709762/ public [Grandparental effects] - Cyprinodon variegatus offspring growth rate in grandparental experiments from specimens wild caught in the Atlantic during 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance) Cyprinodon variegatus offspring growth rate in grandparantal experiments from specimens wild caught in the Atlantic during 2014.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nGGP_Temp (degress Celsius)\nGGP_T_Day (unitless)\ngptemp (degress Celsius)\nptemp (degress Celsius)\notemp (Ocean Temperature, degress Celsius)\nSex (unitless)\nAvg_ED (millimeters)\ngr (millimeters per day)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_709762/index.htmlTable https://www.bco-dmo.org/dataset/709762 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_709762.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_709762&showErrors=false&email= BCO-DMO bcodmo_dataset_709762
log in [Grazing saturation culture experiments using single prey (M.pusilla) and predator (O.danica)] - Flow cytometric counts from grazing saturation culture experiment using single prey (Micromonas pusilla) and predator (Ochromonas danica) (EAGER: A Saturation Approach to Microzooplankton Grazing Rate Determination) Flow cytometric counts of the picoeukaryote, Micromonas pusilla and 2 um green fluorescent bead abundance (Ochromonas danica was used as the predator) in laboratory-culture experiments to demonstrate the saturation approach.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nExperiment (unitless)\nDuration (day (d))\nBeads_T0 (beads per milliliter (beads/ml))\nMicromonas_T0 (cells per milliliter (cells/ml))\nBeads_T24 (beads per milliliter (beads/ml))\nMicromonas_T24 (cells per milliliter (cells/ml))\n BCO-DMO bcodmo_dataset_905469_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777130 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777130.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_777130/ public [Growth - pCO2 x DO effects on Menidia menidia] - Growth data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) Coastal ecosystems experience substantial natural fluctuations in pCO2 and dissolved oxygen (DO) conditions on diel, tidal, seasonal and interannual timescales. Rising carbon dioxide emissions and anthropogenic nutrient input are expected to increase these pCO2 and DO cycles in severity and duration of acidification and hypoxia. How coastal marine organisms respond to natural pCO2 \\u00d7 DO variability and future climate change remains largely unknown. Here, we assess the impact of static and cycling pCO2 \\u00d7 DO conditions of various magnitudes and frequencies on early life survival and growth of an important coastal forage fish, Menidia menidia. Static low DO conditions severely decreased embryo survival, larval survival, time to 50% hatch, size at hatch and post-larval growth rates. Static elevated pCO2 did not affect most response traits, however, a synergistic negative effect did occur on embryo survival under hypoxic conditions (3.0 mg L-1). Cycling pCO2 \\u00d7 DO, however, reduced these negative effects of static conditions on all response traits with the magnitude of fluctuations influencing the extent of this reduction. This indicates that fluctuations in pCO2 and DO may benefit coastal organisms by providing periodic physiological refuge from stressful conditions, which could promote species adaptability to climate change.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nTreatment (unitless)\nCycling_pattern (unitless)\nTank_No (unitless)\nHatch_length (millimeters (mm))\nHatch_length_SE (millimeters (mm))\nMean_growth_rate (millimeters per day (mm day-1))\nMean_growth_rate_SE (millimeters per day (mm day-1))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_777130/index.htmlTable https://www.bco-dmo.org/dataset/777130 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_777130.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_777130&showErrors=false&email= BCO-DMO bcodmo_dataset_777130
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747575.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747575 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747575.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_747575/ public [Hard Substrates Isotopes, AT37-13 & AT42-03] - Averages and standard deviation across species for all macrofauna found on each carbonate rock collected during R/V Atlantis cruise AT37-13 in the Pacific margin of Costa Rica from May to June 2017 (Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea) Averages and standard deviation across species for all macrofauna found on each carbonate rock collected during R/V Atlantis cruise AT37-13 in the Pacific margin of Costa Rica from May to June 2017\n\ncdm_data_type = Other\nVARIABLES:\ncruise (unitless)\nsite (unitless)\nexperiment (unitless)\nsubstrate_number_and_dive (unitless)\nhabitat (unitless)\nd13C_avg (D13 C Avg, per mil)\nd15N_avg (D15 N Avg, per mil)\nd13C_stdev (D13 C Stdev, per mil)\nd15N_stdev (D15 N Stdev, per mil)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_747575/index.htmlTable https://www.bco-dmo.org/dataset/747575 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_747575.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_747575&showErrors=false&email= BCO-DMO bcodmo_dataset_747575
log in [Kelletia kelletii: DNA and RNA sequence] - Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion) Understanding the genomic characteristics of non-model organisms can bridge research gaps between ecology and evolution. However, the lack of a reference genome and transcriptome for these species makes their study challenging. Here, we complete the first full genome and transcriptome sequence assembly of the non-model organism Kellet's whelk, Kelletia kelletii, a marine gastropod exhibiting a poleward range expansion coincident with climate change. We used a combination of Oxford Nanopore Technologies, PacBio, and Illumina sequencing platforms and integrated a set of bioinformatic pipelines to create the most complete and contiguous genome documented among the Buccinoidea superfamily to date. Genome validation revealed relatively high completeness with low missing metazoan Benchmarking Universal Single-Copy Orthologs (BUSCO) and an average coverage of ∼70x for all contigs. Genome annotation identified a large number of protein-coding genes similar to some other closely related species, suggesting the presence of a complex genome structure. Transcriptome assembly and analysis of individuals during their period of peak embryonic development revealed highly expressed genes associated with specific Gene Ontology (GO) terms and metabolic pathways, most notably lipid, carbohydrate, glycan, and phospholipid metabolism. We also identified numerous heat shock proteins (HSPs) in the transcriptome and genome that may be related to coping with thermal stress during the sessile life history stage. A robust reference genome and transcriptome for the non-model organism K. kelletii provide resources to enhance our understanding of its ecology and evolution and potential mechanisms of range expansion for marine species facing environmental changes.\n\ncdm_data_type = Other\nVARIABLES:\nRun (unitless)\nAssay_Type (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\nBioProject (unitless)\nBioSample (unitless)\nBioSampleModel (unitless)\nBytes (unitless)\nCenter_Name (unitless)\n... (29 more variables)\n BCO-DMO bcodmo_dataset_945292_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_812240 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_812240.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_812240/ public [M. jannaschii high/low H2: isotopes and fractionation factors] - Carbon isotopic compositions and fractionation factors of M. jannaschii in high and low hydrogen (H2) environments (Bioenergetic influences upon carbon flow in alkaliphilic sulfate-reducing microbial populations with relevance to the subsurface biosphere at the Lost City Hydrothermal Field) Carbon isotopic compositions and fractionation factors of amino acids and squalenoid lipids in  Methanocaldococcus jannaschii in high and low hydrogen (H2) environments.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nCulture_ID (unitless)\nd13C_ppt_Ala (D13 C Ppt Ala, parts per thousand (ppt))\nd13C_ppt_Gly (D13 C PPT GLY, parts per thousand (ppt))\nd13C_ppt_Thr (D13 C PPT THR, parts per thousand (ppt))\nd13C_ppt_Ser (D13 C Ppt Ser, parts per thousand (ppt))\nd13C_ppt_Val (D13 C Ppt Val, parts per thousand (ppt))\nd13C_ppt_Leu (D13 C Ppt Leu, parts per thousand (ppt))\nd13C_ppt_Iso (D13 C Ppt Iso, parts per thousand (ppt))\nd13C_ppt_Pro (D13 C Ppt Pro, parts per thousand (ppt))\nd13C_ppt_Glu (D13 C Ppt Glu, parts per thousand (ppt))\nd13C_ppt_Phe (D13 C Ppt Phe, parts per thousand (ppt))\nWeighted_Avg_d13C_THAA_ppt (Weighted Avg D13 C THAA Ppt, parts per thousand (ppt))\nd13C_ppt_Sq_3 (D13 C PPT SQ 3, parts per thousand (ppt))\nd13C_ppt_Sq_4 (D13 C PPT SQ 4, parts per thousand (ppt))\nd13C_ppt_Sq_5 (D13 C PPT SQ 5, parts per thousand (ppt))\nd13C_ppt_Sq_6 (D13 C PPT SQ 6, parts per thousand (ppt))\nWeighted_Avg_ppt_d13C_Sq (Weighted Avg Ppt D13 C Sq, parts per thousand (ppt))\nDIC_mM_To (DIC M M To, milliMolar (mM))\nDIC_mM_Tf (DIC M M Tf, milliMolar (mM))\nTFAA_uM_To (TFAA U M To, microMolar (uM))\nTFAA_uM_Tf (TFAA U M Tf, microMolar (uM))\nTHAA_uM_To (THAA U M To, microMolar (uM))\nTHAA_uM_Tf (THAA U M Tf, microMolar (uM))\nFractionation_factor_ppt_eCO2_CH4 (Fractionation Factor Ppt E CO2 CH4, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_B (Fractionation Factor Ppt E CO2 B, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_AA (Fractionation Factor Ppt E CO2 AA, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_squalenoids (Fractionation Factor Ppt E CO2 Squalenoids, parts per thousand (ppt))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_812240/index.htmlTable https://www.bco-dmo.org/dataset/812240 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_812240.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_812240&showErrors=false&email= BCO-DMO bcodmo_dataset_812240
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_936069_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_936069_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_936069_v1/ public [Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities] - Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities collected on cruises AT42-22, TN405, and NA108 from May 2019 to Jun 2022 (Collaborative Research: Microbes need frenemies: unveiling microbial relationships with protists and viruses that support deep-sea hydrothermal vent food webs) This dataset is a collection of sample metadata, identified for all samples, and NCBI accession information for samples and sequence runs produced as part of the \"Microbes need frenemies\" project. This project examines trophic interactions among microbial eukaryotes, viruses, bacteria, and archaea at deep-sea hydrothermal vents using metagenomics and metatranscriptomics and characterizes these ecologically-significant interactions, such as mutualism, predator-prey, or virus-host. \n\nWe sequenced samples collected during the 2020 expedition AT42-22 to the Mid-Cayman Rise hydrothermal vent fields, as well as from the 2019 expedition NA108 to the Gorda Ridge and the 2022 expedition TN405 to the Axial seamount. Sequencing targeted archaea, bacteria, and viruses with metagenomics and microbial eukaryotes with metatranscriptomics. We plan to use these data to identify ecologically-significant interactions among protists, viruses, bacteria, and archaea, with a specific emphasis on microbial mortality via viral lysis and eukaryotic grazing. Archived samples were also included in the analysis.\n\ncdm_data_type = Other\nVARIABLES:\nSAMPLE_ID (unitless)\nSHORT_SAMPLE_ID (unitless)\nSAMPLE_NAME (unitless)\nLAB_NUM (unitless)\nCRUISE_ID (unitless)\nFIELD_REGION (unitless)\nYEAR (unitless)\nFIELD_YEAR (unitless)\nVENT (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nORIGIN_TYPE (unitless)\nORIGIN_DESCRIPTION (unitless)\nFRENEMIES_PROJ (unitless)\n... (11 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_936069_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_936069_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_936069_v1/index.htmlTable https://www.bco-dmo.org/dataset/936069 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_936069_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_936069_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_936069_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808280 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808280.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_808280/ public [Organic polymers and domoic acid] - Organic polymer formation and domoic acid adsorption from experiments conducted using water samples collected in northern Gulf of Mexico in 2018 and 2019 (The biotic and abiotic controls on the Silicon cycle in the northern Gulf of Mexico) Organic polymer formation and domoic acid adsorption. Results from lab experiments designed to investigate organic polymer formation and domoic acid adsorption.  Water samples were collected in the northern Gulf of Mexico in 2018 and 2019.\n\ncdm_data_type = Other\nVARIABLES:\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate (unitless)\ntime2 (Time, unitless)\nExperiment (unitless)\nTreatment (unitless)\nReplicate_bottle (unitless)\nReplicate_subsample (unitless)\nPOC_mass (micrograms (µg))\npDA_OP_mass (P DA OP Mass, nanograms (ng))\nPOC_tox (parts per million (ppm))\nDA_to_C (dimensionless)\nPOC_conc (micrograms (µg) per liter (L))\npDA_conc (P DA Conc, nanograms (ng) per liter (L))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_808280_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_808280/index.htmlTable https://www.bco-dmo.org/dataset/808280 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_808280.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_808280&showErrors=false&email= BCO-DMO bcodmo_dataset_808280
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913181_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913181_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_913181_v1/ public [Picocyanobacteria and picoeukaryote growth under different HOOH concentrations] - Picocyanobacteria (Prochlorococcus or Synechococcus) and picoeukaryote (Micromonas and Ostreococcus) cell concentrations and hydrogen peroxide (HOOH) concentrations during batch culture at the University of Tennessee, Knoxville (Characterizing the effects of exogenous reactive oxygen species on marine microbial ecosystem dynamics) These data include picocyanobacteria (Prochlorococcus or Synechococcus) and picoeukaryote (Micromonas and Ostreococcus) cell concentrations and hydrogen peroxide (HOOH) concentrations during batch culture.  Cultures were either amended with ~400 nanomolar (nM) HOOH on day 0 or left unamended, and cell counts and HOOH concentrations were quantified over several days of incubation. The ability of Synechococcus and picoeukaryotes to protect Prochlorococcus from HOOH was addressed and compared to the protection conferred by the 'helper' heterotroph Alteromonas macleodii EZ55.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nStrain_1 (unitless)\nStrain_2 (unitless)\nHOOH_amend (nanomolar (nM))\ntime_elapsed (Time, days)\nstrain_1_rep_1 (cells per milliliter (cells/mL))\nstrain_1_rep_2 (cells per milliliter (cells/mL))\nstrain_1_rep_3 (cells per milliliter (cells/mL))\nstrain_1_rep_4 (cells per milliliter (cells/mL))\nstrain_2_rep_1 (cells per milliliter (cells/mL))\nstrain_2_rep_2 (cells per milliliter (cells/mL))\nstrain_2_rep_3 (cells per milliliter (cells/mL))\nstrain_2_rep_4 (cells per milliliter (cells/mL))\nave_HOOH (nanomolar (nM))\nSD_HOOH (nanomolar (nM))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_913181_v1/index.htmlTable https://www.bco-dmo.org/dataset/913181 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_913181_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_913181_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_913181_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774017 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774017.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774017/ public [PUA chlorophyll a] - PUA (polyunsaturated aldehydes) experiments: Chlorophyll-a concentrations, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters) PUA (polyunsaturated aldehydes) experiments: Chlorophyll-a concentrations, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nTreatment (unitless)\nRep (unitless)\nChl (micrograms/liter)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774017/index.htmlTable https://www.bco-dmo.org/dataset/774017 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774017.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774017&showErrors=false&email= BCO-DMO bcodmo_dataset_774017
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773979 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773979.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_773979/ public [PUA experimental design] - PUA (polyunsaturated aldehydes) experiments: Experimental Conditions, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters) PUA (polyunsaturated aldehydes) experiments: Experimental Conditions, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nLocation (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nDate (unitless)\nTemperature (degrees Celsius)\nSalinity (Sea Water Practical Salinity, PSU)\nLight_Dark_Cycle (unitless)\nMedium (unitless)\nCopepod_spp (unitless)\nNumber_Copepods (copepods)\nBacteria (cells per ml)\nChl_a (micrograms/liter)\nDinoflag (micrograms Carbon/liter)\nCiliate (micrograms Carbon/liter)\nHepD (Hep D, nanoMolar)\nHepP (Hep P, nanoMolar)\nOctD (Oct D, nanoMolar)\nOctP (Oct P, nanoMolar)\nDecD (Dec D, nanoMolar)\nDecP (Dec P, nanoMolar)\nTot (nanoMolar)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_773979_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_773979/index.htmlTable https://www.bco-dmo.org/dataset/773979 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_773979.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_773979&showErrors=false&email= BCO-DMO bcodmo_dataset_773979
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774033 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774033.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774033/ public [PUA Microzooplankton Biomass] - Microzooplankton biomass estimates from PUA (polyunsaturated aldehydes) experiments, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters) Microzooplankton biomass estimates from PUA (polyunsaturated aldehydes) experiments, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nBottle_ID (unitless)\nTreatment (unitless)\nRep (unitless)\nTaxa (unitless)\nPhylum (unitless)\nESD (micrometers)\nBiomass (micrograms carbon/liter)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774033/index.htmlTable https://www.bco-dmo.org/dataset/774033 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774033.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774033&showErrors=false&email= BCO-DMO bcodmo_dataset_774033
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669652 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669652.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_669652/ public [Sediment chlorophyll and phaeophytin] - Raw benthic chlorophyll and phaeophytin data from cores collected in Massachusetts from 2012-2015. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary) Raw benthic chlorophyll and phaeophytin data from cores collected in Massachusetts from 2012-2015.\n\ncdm_data_type = Other\nVARIABLES:\nmonth (unitless)\nestuary (unitless)\nplot (unitless)\ntimepoint (unitless)\nexperiment (unitless)\nsampleID (Sample ID, unitless)\nchla (Concentration Of Chlorophyll In Sea Water, ug cm-2)\nphaeo (ug cm-2)\nlogchla (log)\nlogphaeo (log)\nchla_phaeo (Concentration Of Chlorophyll In Sea Water, ug cm-2)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_669652/index.htmlTable https://www.bco-dmo.org/dataset/669652 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_669652.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_669652&showErrors=false&email= BCO-DMO bcodmo_dataset_669652
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_714506.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_714506 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_714506.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_714506/ public [Sediment cores (Wood Fall project)] - Sediment cores (Wood Fall project) (The energetic assembly of biological communities: a test with deep-sea woodfalls) Sediment cores (Wood Fall project)\n\ncdm_data_type = Other\nVARIABLES:\nrov_dive (dimensionless)\nsite (dimensionless)\ndepth (m)\ncore_no (dimensionless)\ndate (unitless)\nexperiment (dimensionless)\nsorter (dimensionless)\ndate_sorted (unitless)\ncore_type (dimensionless)\ncore_id (dimensionless)\ngroup_number (dimensionless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_714506/index.htmlTable https://www.bco-dmo.org/dataset/714506 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_714506.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_714506&showErrors=false&email= BCO-DMO bcodmo_dataset_714506
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669693 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669693.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_669693/ public [Sediment PLFA concentrations] - Raw concentrations of individual PLFA compounds from Massachusetts from 2012-2015. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary) Raw concentrations of individual PLFA compounds from Massachusetts from 2012-2015.\n\ncdm_data_type = Other\nVARIABLES:\nmonth (unitless)\nestuary (unitless)\ntimepoint (unitless)\nexperiment (unitless)\nc12 (percentage)\ni13 (percentage)\na13 (percentage)\nc13 (percentage)\ni14 (percentage)\nc14 (percentage)\ni15 (percentage)\na15 (percentage)\nc15 (percentage)\ni16 (percentage)\nc16 (percentage)\nme10_16 (percentage)\ni17 (percentage)\na17 (percentage)\nc17 (percentage)\nc18 (percentage)\ni19 (percentage)\na19 (percentage)\nc19 (percentage)\nc20_5w3 (percentage)\nc20_4w6 (percentage)\nc20 (percentage)\nc21 (percentage)\n... (9 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_669693/index.htmlTable https://www.bco-dmo.org/dataset/669693 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_669693.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_669693&showErrors=false&email= BCO-DMO bcodmo_dataset_669693
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734364 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734364.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_734364/ public [Shipboard bioassay experiments] - Dissolved inorganic nitrogen, chlorophyll-a, and primary production from bioassay experiments during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) (Collaborative Research: Impacts of atmospheric nitrogen deposition on the biogeochemistry of oligotrophic coastal waters) Three bioassay experiments were conducted in August of 2014 during the R/V Hugh R. Sharp cruise HRS1414 which generated measurements of dissolved inorganic nitrogen, chlorophyll-a and primary productivity.  Treatments included various nutrient (N,Fe,P) additions and rainwater.\\r\\n\\r\\nThis dataset was utilized in the following publication:\\r\\nSedwick. P. N., et al. \\Assessing phytoplankton nutritional status and potential impact of wet deposition in seasonally oligotrophic waters of the Mid-Atlantic Bight.\\ Geophysical Research Letters (2018): doi: 10.1002/2017GL075361\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\ntreatment (unitless)\ntime2 (Time, hours)\nmean_NO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromoles per liter (umol/L))\nSD_NO3_NO2 (micromoles per liter (umol/L))\nmean_NH4 (micromoles per liter (umol/L))\nSD_NH4 (micromoles per liter (umol/L))\nmean_Chl_a (Concentration Of Chlorophyll In Sea Water, micrograms per liter (mg/L))\nSD_Chl_a (micrograms per liter (mg/L))\nmean_PP (micromoles C per liter per day (umol C/L/d))\nSD_PP (micromoles C per liter per day (umol C/L/d))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_734364/index.htmlTable https://www.bco-dmo.org/dataset/734364 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_734364.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_734364&showErrors=false&email= BCO-DMO bcodmo_dataset_734364
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777117.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777117 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777117.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_777117/ public [Survival - pCO2 x DO effects on Menidia menidia] - Survival data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) Coastal ecosystems experience substantial natural fluctuations in pCO2 and dissolved oxygen (DO) conditions on diel, tidal, seasonal and interannual timescales. Rising carbon dioxide emissions and anthropogenic nutrient input are expected to increase these pCO2 and DO cycles in severity and duration of acidification and hypoxia. How coastal marine organisms respond to natural pCO2 \\u00d7 DO variability and future climate change remains largely unknown. Here, we assess the impact of static and cycling pCO2 \\u00d7 DO conditions of various magnitudes and frequencies on early life survival and growth of an important coastal forage fish, Menidia menidia. Static low DO conditions severely decreased embryo survival, larval survival, time to 50% hatch, size at hatch and post-larval growth rates. Static elevated pCO2 did not affect most response traits, however, a synergistic negative effect did occur on embryo survival under hypoxic conditions (3.0 mg L-1). Cycling pCO2 \\u00d7 DO, however, reduced these negative effects of static conditions on all response traits with the magnitude of fluctuations influencing the extent of this reduction. This indicates that fluctuations in pCO2 and DO may benefit coastal organisms by providing periodic physiological refuge from stressful conditions, which could promote species adaptability to climate change.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nTank (unitless)\nBucket (unitless)\nTarget_Temperature (degrees Celsius)\nCycling_pattern (unitless)\nTarget_pCO2_uatm (Target P CO2 Uatm, microatmospheres (uatm))\nTarget_DO_mgL (Target DO Mg L, milligrams per liter (mg L-1))\nEmbryo_survival (unitless (percent))\nLarval_survival_to_15dph (unitless (percent))\nLarval_survival_to_6dph (unitless (percent))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_777117/index.htmlTable https://www.bco-dmo.org/dataset/777117 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_777117.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_777117&showErrors=false&email= BCO-DMO bcodmo_dataset_777117
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738447.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738447 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738447.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_738447/ public [Table 1 - Physical and chemical parameters during egg experiments] - Table 1: Physical and chemical parameters during Calanus finmarchicus and Meganyctiphanes norvegica egg hatching experiments, 2011-2012 (Ocean Acidification-Category 1- Impact of ocean acidification on survival of early life stages of planktonic copepods in the genus Calanus in the northern) During eggs experiments, the general conditions within the tanks were monitored using electrodes for temperature, pH and its millivolt output, salinity, and dissolved oxygen. Results are published in Preziosi et al (2017), Table 1.\n\ncdm_data_type = Other\nVARIABLES:\nEXPERIMENT (unitless)\nEVENT (unitless)\nYEAR (year)\nMONTH (unitless)\nDAY (unitless)\nHR (unitless)\nMIN (unitless)\nISO_DateTime_local (ISO Date Time Local)\nyrday_local (unitless)\nTIME_elapsed (hours)\nPURPOSE (unitless)\nROWTYPE (unitless)\nTEMP_1 (degrees Celsius)\nPH_1 (pH units)\nPHMV_1 (millivolts)\nSAL_1 (parts per thousand (ppt))\nDO_1 (% saturation)\nTEMP_2 (degrees Celsius)\nPH_2 (pH units)\nPHMV_2 (millivolts)\nSAL_2 (parts per thousand (ppt))\nDO_2 (% saturation)\nTEMP_3 (degrees Celsius)\nPH_3 (pH units)\nPHMV_3 (millivolts)\n... (13 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_738447/index.htmlTable https://www.bco-dmo.org/dataset/738447 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_738447.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_738447&showErrors=false&email= BCO-DMO bcodmo_dataset_738447
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738494 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738494.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_738494/ public [Table 2 - Carbonate data and nutrients during egg experiments] - Table 2: Carbonate data and nutrients measured during Calanus finmarchicus and Meganyctiphanes norvegica egg hatching success experiments, 2011-2012 (Ocean Acidification-Category 1- Impact of ocean acidification on survival of early life stages of planktonic copepods in the genus Calanus in the northern) This dataset presents the carbonate system and nutrients measurements during Calanus finmarchicus and Meganyctiphanes norvegica egg hatching success experiments, 2011-2012. Results are published in Preziosi et al (2017), Table 2.\n\ncdm_data_type = Other\nVARIABLES:\nEXPERIMENT (unitless)\nSAMPLING_DATE (unitless)\nEVENT (unitless)\nTIME_elapsed (hours)\nTANK (unitless)\nTEMP (Temperature, degrees Celsius)\nSAL (parts per thousand (ppt))\nALKALIN (micromol/kilogram)\nTCO2 (micromol/kilogram)\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromol/kilogram)\nNH4 (Mole Concentration Of Ammonium In Sea Water, micromol/kilogram)\nPO4 (Mass Concentration Of Phosphate In Sea Water, micromol/kilogram)\nSI (Mass Concentration Of Silicate In Sea Water, micromol/kilogram)\nPHTTL (pH units)\nXCO2 (parts per million (ppm) in dry gas)\nOMCA (unitless)\nOMAR (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_738494/index.htmlTable https://www.bco-dmo.org/dataset/738494 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_738494.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_738494&showErrors=false&email= BCO-DMO bcodmo_dataset_738494
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738651 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_738651.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_738651/ public [Table 3 - Hatching success] - Table 3: Calanus finmarchicus and Meganyctiphanes norvegica egg hatching success, 2011-2012 (Ocean Acidification-Category 1- Impact of ocean acidification on survival of early life stages of planktonic copepods in the genus Calanus in the northern) This dataset reports hatching success for eggs of Calanus finmarchicus and Meganyctiphanes norvegica. Average temperature and pH are reported as well as hatching success for each replicate dish of eggs. Results are published in Preziosi et al (2017), Table 3.\n\ncdm_data_type = Other\nVARIABLES:\nEXPERIMENT (#)\nSTARTDATE (unitless)\nSPECIES (name)\nSOURCE (text)\nDURATION (hours)\nTANK (#)\nAVERAGE_TEMP (degrees C)\nAVERAGE_PHTTL (pH units)\nHS1 (percent)\nHS2 (percent)\nHS3 (percent)\nHS4 (percent)\nHS5 (percent)\nHS6 (percent)\nHS7 (percent)\nHS8 (percent)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_738651/index.htmlTable https://www.bco-dmo.org/dataset/738651 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_738651.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_738651&showErrors=false&email= BCO-DMO bcodmo_dataset_738651
log in [Thalassiosira pseudonana CCMP1335 endometabolite uptake by Ruegeria pomeroyi DSS-3] - Thalassiosira pseudonana CCMP1335 endometabolite uptake by Ruegeria pomeroyi DSS-3 (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux) The ocean's temperature increase has fundamental implications for physiological rates and processes of marine microbes. In this study, a marine diatom Thalassiosira pseudonana CCMP1335 was acclimated for three months at temperatures below (14°C), equal to (20°C), and above (28°C). Heterotrophic bacterium Ruegeria pomeroyi DSS-3 was inoculated into cultures, and transporter expression was compared between temperatures.  R. pomeroyi transporter expression leveraged as  a biosensor of available diatom exometabolites indicated temperature-related substitution of diatom osmolytes dimethylsulfoniopropionate (DMSP), dihydroxypropanesulfonate (DHPS), and homarine (dominating carbon transfer at lower temperatures) with glycine betaine and choline (dominating at higher temperatures). T. pseudonana endometabolome pools and biosynthetic pathway expression indicated increased availability of amino acids and glycerol-3-phosphate at higher temperatures. Overall trends across datasets supported a greater importance of organic sulfur compounds in diatom-bacterial metabolite transfer at lower temperatures and greater importance of organic nitrogen compounds at higher temperatures.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nSample_ID (unitless)\nMetabolomics_Workbench_Project_ID (unitless)\nMetabolomics_Workbench_Study_ID (unitless)\nMetabolomics_Workbench_Sample_ID (unitless)\nNumber (unitless)\nTemperature (degrees Celsius (°C))\nReplicate (unitless)\nCulture (unitless)\nJGI_Sample_ID (unitless)\nTime_Point_h (hours (h))\nBacteria_presence (unitless)\nGlycine_Betaine (NMR peak intensity per biovolume)\nProline (NMR peak intensity per biovolume)\nDHPS (NMR peak intensity per biovolume)\n... (13 more variables)\n BCO-DMO bcodmo_dataset_928203_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_955736_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_955736_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_955736_v1/ public [Thermal limits of Acartia tonsa and the effect of isopod parasitism] - Thermal limits of Acartia tonsa and the effect of isopod parasitism from Critical Thermal Maxima (CTmax) experiments conducted with copepods collected from Key Largo, Florida in February 2023 (Linking eco-evolutionary dynamics of thermal adaptation and grazing in copepods from highly seasonal environments) Acartia tonsa were collected from Key Largo, Florida in February 2023. A portion of the adult female copepods in this collection were parasitized by juvenile bopyrid isopods. We measured thermal limits (as Critical Thermal Maximum) for individuals with and without these parasites. Data were collected by Dr. Matthew Sasaki.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nexperiment_date (unitless)\nexperiment_day (unitless)\nexperiment_month (unitless)\nexperiment_year (unitless)\ntube (unitless)\nbopyrid (unitless)\nctmax (degrees Celsius)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_955736_v1/index.htmlTable https://osprey.bco-dmo.org/dataset/955736 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_955736_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_955736_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_955736_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774585_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774585_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774585_v1/ public [UCYN-A Host activity] - Experimental data testing the N2 and CO2 fixing activity of the UCYN-A/haptophyte symbiosis in nitrate and ammonium rich waters in the California Current from May to October 2017 (Collaborative Research: Biogeochemical significance of the abundant, uncultivated symbiotic cyanobacteria UCYN-A) Experimental data testing the N2 and CO2 fixing activity of the UCYN-A/haptophyte symbiosis in nitrate and ammonium rich waters in the California Current from May to October 2017.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nCruise (unitless)\nDate (unitless)\nlat (degrees_north)\nlongitude (degrees_east)\nTreatment (unitless)\nn (count)\niso_sub (unitless)\nbulk_fix_uptake_rate_bulk_avg (micromole Nitrogen per meter cubed per day (umol N/m3/d))\nbulk_fix_uptake_rate_bulk_sd (micromole Nitrogen per meter cubed per day (umol N/m3/d))\nC_fix_rate_bulk_avg (millimole Carbon per meter cubed per day (mmolC/m3/d))\nC_fix_rate_bulk_sd (millimole Carbon per meter cubed per day (mmolC/m3/d))\nLOD_bulk (umol N/m3/d or mmolC/m3/d depending on column it references)\nMQR_bulk (umol N/m3/d or mmolC/m3/d depending on column it references)\nsheet (unitless)\nchl_a_n (count)\nchla_avg (micrograms per liter (ug/L))\nchla_sd (micrograms per liter (ug/L))\nPON_n (count)\nPON_avg (micromole per liter (umol/L))\nPON_sd (micromole per liter (umol/L))\nPOC_n (count)\nPOC_avg (micromole per liter (umol/L))\nPOC_sd (micromole per liter (umol/L))\nSublineage (unitless)\nsub_enrich_atom_pcnt (percent)\n... (10 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774585_v1/index.htmlTable https://www.bco-dmo.org/dataset/774585 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774585_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774585_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_774585_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_714880 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_714880.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_714880/ public [Woodfalls (Wood Fall project)] - Woodfalls (Wood Fall project) (The energetic assembly of biological communities: a test with deep-sea woodfalls) Information for individual wood falls including size and deployment information.\n\ncdm_data_type = Other\nVARIABLES:\ntag_number (value)\ntag_color (green, white, orange, yellow, blue)\nexperiment (unitless)\nrov_dive (unitless)\nsite (unitless)\ndeployment_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\ndeployment_row (value)\ndeployment_column (value)\nwood_type (species)\nlength (centimeters)\nmax_diameter (centimeters)\nmin_diameter (centimeters)\nwood_mass_final (kilograms)\nnotes (unitless)\nweight_wood_zip (kilograms)\nweight_packet_total_1 (kilograms)\nweight_wood_only (kilograms)\nweight_wrap_only (kilograms)\nweight_zip (kilograms)\nzip_tie_length (unitless)\nweight_packet_total_2 (kilograms)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_714880_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_714880/index.htmlTable https://www.bco-dmo.org/dataset/714880 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_714880.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_714880&showErrors=false&email= BCO-DMO bcodmo_dataset_714880
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_744468 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_744468/ public [Zooplankton/phytoplankton CSIA-AA] - CSIA 15N AA data from phytoplankton, microzooplankton, and Calanus pacificus. (Resolving the trophic connection between protistan grazers and mesozooplankton in marine food webs using amino acid-specific stable isotope analyses) CSIA 15N AA data from phytoplankton, microzooplankton, and Calanus pacificus.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nOrganism (unitless)\nstage (unitless)\nbulk_d15N (Bulk D15 N, per mil)\nAla_d15N (Ala D15 N, per mil)\nAsp_d15N (Asp D15 N, per mil)\nGlu_d15N (Glu D15 N, per mil)\nIsoL_d15N (Iso L D15 N, per mil)\nLeu_d15N (Leu D15 N, per mil)\nPro_d15N (Pro D15 N, per mil)\nVal_d15N (Val D15 N, per mil)\nGly_d15N (GLY D15 N, per mil)\nLys_d15N (LYS D15 N, per mil)\nPhe_d15N (Phe D15 N, per mil)\nSer_d15N (Ser D15 N, per mil)\nThr_d15N (THR D15 N, per mil)\nNote_Organism (unitless)\nNote_bulk_d15N (Note Bulk D15 N, unitless)\nNote_Gly_d15N (Note Gly D15 N, unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_744468/index.htmlTable https://www.bco-dmo.org/dataset/744468 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_744468.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_744468&showErrors=false&email= BCO-DMO bcodmo_dataset_744468

 
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