Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
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| log in | [Atlantic dog whelk (Nucella lapillus) genome] - DRAFT: Annotated genome of the Atlantic dog whelk, Nucella lapillus (Local adaptation and the evolution of plasticity under predator invasion and warming seas: consequences for individuals, populations and communities) | Nucella lapillus has been a focal organism of ecological and evolutionary studies on rocky shores for decades. As a direct developer, this species has limited dispersal but is broad geographic range makes it ideal for studies of population structure, isolation by distance, and selection across different environmental gradients. The fully annotated genome generated ~37X coverage and the genome assembly is 2.32 Gbp. Genomic resources for mollusks are relatively limited compared to other phyla and this new genome will enhance our understanding of genomic variation in mollusks and studies seeking to link genomic variation with organismal performance and community-level processes under various dimensions of environmental change.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nSampling_Date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nHabitat (unitless)\nSpecimen_type (unitless)\nSpecies (unitless)\nTaxon_IDs (unitless)\nTissue_type (unitless)\nGenBank_Assembly (unitless)\nIsolate (unitless)\nAccession (unitless)\nBegin (base pair (bp))\nEnd (base pair (bp))\nOrientation (unitless)\nGene_ID (unitless)\nGene_Type (unitless)\nProtein_accession (unitless)\nProtein_length (amino acids (aa))\nLocus_tag (unitless)\n | BCO-DMO | bcodmo_dataset_991343_v1 | ||||||||||||
| log in | [Subsurface Nitrospirota and Nitrospinota Origins] - Collection of subsurface bacteria Nitrospirota and Nitrospinota genome data including IMG and NCBI accessions for sequence datasets in June 2021 (Slow Life in Crust project) (Microbial activity in the crustal deep biosphere) | The phyla Nitrospirota and Nitrospinota have received significant research attention due to their unique mitrogen metabolisms important to biogeochemical and industrial processes. These phyla are common inhabitants of marine and terrestrial subsurface environments and contain members capable of diverse physiologies in addition to nitrite oxidation and complete ammonia oxidation. We used phylogenomics and gene-based analysis with ancestral state reconstruction and gene-tree-species tree reconciliation methods to investigate the life histories of these two phyla. This dataset includes list of previously-published sequence datasets that were used for the analysis. The data and interpretations are published at DOI 10.1038/s41396-023-01397-x. Additional metadata such as NCBI accessions, assembly release dates, and NCBI taxon ids were added in December 2024.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nIMG_genome_id (unitless)\nGenBank_assembly (unitless)\nSample (unitless)\nCorrected_BioSample (unitless)\nBioProject (unitless)\nrelease_date (unitless)\nlast_updated_date (seconds since 1970-01-01T00:00:00Z)\npublication_date (seconds since 1970-01-01T00:00:00Z)\nDomain (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nNCBI_organism_taxid (unitless)\nIsolation_Source (unitless)\nIsolationPlot (unitless)\n... (11 more variables)\n | BCO-DMO | bcodmo_dataset_933610_v1 |