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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665454 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_665454.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_665454/ public [BLASTp homology data] - BLASTp homology data from genes obtained in samples collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project). (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators) BLASTp homology data from genes obtained in samples collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project).\n\ncdm_data_type = Other\nVARIABLES:\ngene (unitless)\ngenus (unitless)\nspecies (unitless)\nstrain (unitless)\nMMETSP_ID (unitless)\nsubject_ID (unitless)\ne_value (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nclade (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_665454_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_665454/index.htmlTable https://www.bco-dmo.org/dataset/665454 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_665454.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_665454&showErrors=false&email= BCO-DMO bcodmo_dataset_665454
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_896886_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_896886_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_896886_v1/ public [Bleached octocoral genotypes] - Genotypes of symbionts in Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015-August 2017) in the Florida Keys (RAPID: Variations in symbiont diversity in octocoral across seasons and a predicted bleaching event) Alleles at four microsatellite loci, genotype based on these, fragment size of hypervariable region of the chloroplast 23S rDNA and genus of symbionts in Eunicea flexuosa, Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015-August 2017).\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nSample_ID (unitless)\nMonth (unitless)\nYear (unitless)\nSITE (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nComment (unitless)\nB7SYM15 (unitless)\nB7SYM34 (unitless)\nB7SYM8 (unitless)\nSYM155 (unitless)\nAssigned_Genotype (unitless)\nCP_type (unitless)\nGenus (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_896886_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_896886_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_896886_v1/index.htmlTable https://www.bco-dmo.org/dataset/896886 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_896886_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_896886_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_896886_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926379_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926379_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_926379_v1/ public [Community composition of corals in Palau determined by quantitative transects] - Community composition of corals in Palau determined by quantitative transects sampled in April 2023 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?) Bottlenecks in the early life-history stages of corals can shape community composition across reefs. We used photographic surveys and the deployment of tiles to capture recruit, juvenile, and adult corals at 7 sites across Palau. Photographic surveys were undertaken using two methods: a qualitative biodiversity survey (2021–2022) and quantitative transects (2023). This dataset includes the results from the quantitative transects.\n\ncdm_data_type = Other\nVARIABLES:\nSite (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nType (unitless)\nStage (unitless)\nTransect (unitless)\nGenus (unitless)\nAbundance (counts of individuals in each 10 square meter transect)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_926379_v1/index.htmlTable https://www.bco-dmo.org/dataset/926379 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_926379_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_926379_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_926379_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911338_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911338_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911338_v1/ public [Cyanobacteria cultures used to generate DNA reference library] - Cyanobacteria cultures used to generate DNA reference library from samples collected from sites in Alpena and Monroe, Michigan and Palm Coast, Florida between May and June 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and sample type for samples used to develop the cultures.\nEach of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Accession (unitless)\nCulture_ID (unitless)\nGenus (unitless)\nSpecies (unitless)\nMedia (unitless)\nCollection_Date (unitless)\nLocation (unitless)\nSample_Type (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911338_v1/index.htmlTable https://www.bco-dmo.org/dataset/911338 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911338_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911338_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_911338_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911008_v1/ public [Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and water parameter information from samples used to develop the cultures, and growth medium.\nEach of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Accession (unitless)\nCulture_ID (unitless)\nGenus (unitless)\nSpecies (unitless)\nVariety (unitless)\nCollection_ID (unitless)\nMedia (unitless)\nCollection_Date (Month/Day/Year)\nLocation (unitless)\nSample_Type (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\nTemp (Celsius (°C))\nCond (Microsiemens / centimeter (μS/cm))\nTDS (Grams/liter (g/L))\npH (unitless)\nORP (Millivolts (mV))\nNTU (Nephelometric Turbidity Units (NTU))\nODO (Percentage saturation)\n... (6 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911008_v1/index.htmlTable https://www.bco-dmo.org/dataset/911008 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911008_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911008_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_911008_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907321_v1/ public [Ecological monitoring Natividad 2006-2021: Algae] - Ecological monitoring of algae on Isla Natividad from 2006 to 2021 (Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability) This dataset encompasses information about algae transects between 2006 to 2021 in Isla Natividad, Baja California Sur, Mexico. Abundances of algae and the number of stipes of each individual algae can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of algae counted.\n\nEcological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate  of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nDAY (unitless)\nMONTH (unitless)\nYEAR (unitless)\nSTATE (unitless)\nCOMMUNITY (unitless)\nSITE (unitless)\nLAT (degrees_north)\nlongitude (Long, degrees_east)\nHABITAT (unitless)\nZONE (unitless)\nPROTECTION (unitless)\n... (18 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907321_v1/index.htmlTable https://www.bco-dmo.org/dataset/907321 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907321_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907321_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_907321_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907363_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907363_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907363_v1/ public [Ecological monitoring Natividad 2006-2021: Fish] - Ecological monitoring of fish on Isla Natividad from 2006 to 2021 (Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability) This dataset encompasses information about fish transects between 2006 to 2021 in Isla Natividad. Abundances, sex and size of fish can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of the fish counted.\n\nEcological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate  of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nDAY (unitless)\nMONTH (unitless)\nYEAR (unitless)\nSTATE (unitless)\nCOMMUNITY (unitless)\nSITE (unitless)\nLAT (degrees_north)\nlongitude (Long, degrees_east)\nHABITAT (unitless)\nZONE (unitless)\nPROTECTION (unitless)\nMPA (unitless)\n... (15 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907363_v1/index.htmlTable https://www.bco-dmo.org/dataset/907363 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907363_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907363_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_907363_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907353_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907353_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907353_v1/ public [Ecological monitoring Natividad 2006-2021: Invertebrates] - Ecological monitoring of marine invertebrates on Isla Natividad from 2006 to 2021 (Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability) This dataset encompasses information about marine invertebrates transects between 2006 to 2021 in Isla Natividad. Abundances of invertebrates can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of each invertebrate counted.\n\nEcological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate  of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nDAY (unitless)\nMONTH (unitless)\nYEAR (unitless)\nSTATE (unitless)\nCOMMUNITY (unitless)\nSITE (unitless)\nLAT (degrees_north)\nlongitude (Long, degrees_east)\nHABITAT (unitless)\nZONE (unitless)\nPROTECTION (unitless)\nMPA (unitless)\n... (13 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907353_v1/index.htmlTable https://www.bco-dmo.org/dataset/907353 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907353_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907353_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_907353_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728110 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_728110/ public [Epibenthic community taxonomy] - Table of taxonomic hierarchy and the sampling method for organisms collection in Aleutian Island kelp forests, June 2016 and July 2017 (Kelp Forest Ecosystem Engineer Loss project) (Collaborative Research: Changes in ecosystem production and benthic biodiversity following the widespread loss of an ecosystem engineer) This dataset includes the taxonomic hierarchy for epibenthic community organisms collected in Aleutian Island kelp forests, based on biomass data. It also lists the method used to sample, either by a scrape collection or by a visual count along a swath.\n\ncdm_data_type = Other\nVARIABLES:\nTaxon (unitless)\nKingdom (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder_Subclass (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nSampling_method (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_728110/index.htmlTable https://www.bco-dmo.org/dataset/728110 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_728110.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_728110&showErrors=false&email= BCO-DMO bcodmo_dataset_728110
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709963 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709963.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_709963/ public [Fish roadside surveys 2014-2015] - Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project) (Adaptive Capacity, Resilience, and Coral Reef State Shifts in Social-ecological Systems) Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project)\n\ncdm_data_type = Other\nVARIABLES:\nlocation_caught (unitless)\nlocation_sold (unitless)\ngenus (unitless)\nspecies (unitless)\nsurvey_event (unitless)\ndate (unitless)\nlength (centimeters)\nhabitat_caught (unitless)\ngear_1 (unitless)\ngear_2 (unitless)\ngear_3 (unitless)\nboat_type (unitless)\nmotor (unitless)\ncrew (unitless)\ndeparture_time (unitless)\nhours_fishing (hours)\nis_seller_the_fisher (unitless)\ngender (unitless)\naverage_fishing_days_per_week (days)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_709963/index.htmlTable https://www.bco-dmo.org/dataset/709963 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_709963.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_709963&showErrors=false&email= BCO-DMO bcodmo_dataset_709963
log in [Identity and Heights of Octocoral Species] - Identity and heights of Octocoral species found on transects at 6 sites on the south shore of St John, U.S. Virgin Islands in 2021 and 2022 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) Transect surveys were conducted at 6 sites on the south shore of St John, within the U.S. Virgin Islands National Park during the summers of 2021 and 2022.  Depending on the site, 3 to 6 transects were established.  Identity and heights of all arborescent octocorals greater than or equal to 5 centimeters were recorded from 1 square meter quadrats on the transects.  The position of colonies relative to the site, meter on the transect, and side of the quadrat are included.   Surveys were conducted by Drs. Howard Lasker and Christopher Wells of the University at Buffalo.\n\ncdm_data_type = Other\nVARIABLES:\nCensus_Year (unitless)\nDate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nSite (unitless)\nTransect_Position (unitless)\nMeter_on_transect (meters)\nSide_of_transect (unitless)\nMeter_Side (unitless)\nGenus (unitless)\nSpecies (unitless)\nSpecies_code (unitless)\nTotal_height (centimeters (cm))\nHeight_of_living_tissue (centimeters (cm))\nBasal_damage (centimeters (cm))\nDamage (unitless)\nCyphoma_present (unitless)\nComments (unitless)\n BCO-DMO bcodmo_dataset_893615_v1
log in [Integrated Energy Density data of Marine and Freshwater Organisms] - Marine and Freshwater Energy Density Data Integrated and Organized by Taxonomy from Previous Research Sources (1961 through June 2024) Discovered by a Literature Review (Nutritional ecology of climate change: Impacts on Northwest Atlantic fishes) Energy is the currency of exchange within ecosystems which defines the strength and influence of interactions, particularly between predator and prey. The ability to estimate the productivity of an ecosystem is, therefore, dependent upon the estimation of consumer diet contents and their energetic quality. To estimate growth, reproduction, and, ultimately, survival of individuals, measures of prey quality for predators are essential both at the individual level and for scaling to ecosystem-wide fluxes and pools. Among measures of prey quality, energy density (kiloJoules per gram; kJ/g) is the most used in ecology. Considerable efforts have established estimates of energy densities for many aquatic taxa. However, a database of aquatic organism energetics constructed by integrating and organizing across multiple sources spawning marine and freshwater habitats across the globe is needed to add both depth (more samples to measure within-taxa variation) and breadth (more taxa). To generate a comprehensive energy density database of aquatic organisms, we performed a multifaceted review to find sources from the peer-reviewed and grey literature with a broad search on Web of Science, from citations of related literature, and a haphazard recommendation from experts. Estimates of energy density of whole organism live weights (kJ/g wet weight) were prioritized to better relate to diet and energetics studies. When energy density was only provided per gram dry weight, the dry weight and percentage water was used to calculate energy density per gram wet weight. Sub-organism (i.e. tissue specific) energy density estimates are included (e.g. muscle, liver, egg) when only these were reported. A total of 3810 records are included from 134 sources, covering 2016 unique taxa, of which 1771 (87.76%) are identified at the species level. Species or taxa-specific energy densities ranged from 0.015 to 17.949 kJ/g wet weight (WW) with a mean ± SD = 4.509 ± 1.94 kJ/g WW and median = 4.225 kJ/g WW. Among those phyla with more than three species (n phyla = 9), chordates (n taxa = 1283) had the highest average energy density (mean ± SD; 4.92 ± 1.90; 0.162 – 17.9 kJ/g WW) and ctenophores (n taxa = 4) had the lowest average (0.0988 ± 0.074; 0.03 to 0.205 kJ/g WW). Each record includes the organism taxonomy to the lowest resolution listed in the original source, energetic data available from the source including body composition and energy density data, number of replicates and methodology for measuring energetics information--primarily split between bomb calorimetry and proximate composition--as well as the source's author(s), year, and publication. Additional meta-data are included whenever possible based on details from the original source including the 1) environmental features: area, method, and timing of capture; 2) methodological features: storage method, storage duration, and tissue type measured; and 3) organismal features: weight, length, and sex; as well as any additional notes about the source. This comprehensive database integrates those data discoverable by our search and which met inclusion criteria identified above in a taxonomic and spatial organization framework to facilitate modeling trophic interactions, bioenergetics, growth, productivity, and energy fluxes through marine and freshwater ecosystems.\n\ncdm_data_type = Other\nVARIABLES:\nPhylum (unitless)\n... (41 more variables)\n BCO-DMO bcodmo_dataset_948253_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_895989_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_895989_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_895989_v1/ public [Lobate ctenophore in situ swimming velocities and morphometrics] - Lobate ctenophore in situ swimming velocities and morphometrics sampled off of Woods Hole, Massachusetts and the Kona coast of Hawaii, USA from 2019 to 2022 (Collaborative Research: Quantifying the trophic roles of epipelagic ctenophores) This dataset includes morphological and swimming data of lobate ctenophores swimming in the field. The data were collected by SCUBA divers using videography off of Woods Hole, Massachusetts (41°30'48.14\"N, 70°41'36.56\"W) and the Kona coast of Hawaii (19°34'55.24\"N, 156°12'56.60\"W) from 2019 to 2022. The videos were collected at various dates and locations depending on the lobate species.\n\ncdm_data_type = Other\nVARIABLES:\nGenus (unitless)\nCollection (unitless)\nDate (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nTemperature (degrees Celsius)\nIndividual (unitless)\nLength (millimeters (mm))\nGap (millimeters (mm))\nWidth (millimeters (mm))\nLobe (millimeters (mm))\nVelocity (millimeters per second (mm/s))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_895989_v1/index.htmlTable https://www.bco-dmo.org/dataset/895989 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_895989_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_895989_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_895989_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658275 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658275.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658275/ public [Mapping information and signs for individual diseased corals] - Data describing every diseased coral record from surveys in the Caribbean during 2012 (Contagious coral diseases project) (Are coral diseases contagious?) Data describing every diseased coral record from surveys in the Caribbean during 2012 (Contagious coral diseases project)\n\ncdm_data_type = Other\nVARIABLES:\ntemp_level (unitless)\nlocation (unitless)\nreef (unitless)\nsite_number (unitless)\ndepth_max (Depth, meters)\nmeter (unitless)\ngenus (unitless)\nspecies (unitless)\nUIN (unitless)\nsign_1 (unitless)\nsign_2 (unitless)\nsign_3 (unitless)\nsign_4 (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658275/index.htmlTable https://www.bco-dmo.org/dataset/658275 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658275.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658275&showErrors=false&email= BCO-DMO bcodmo_dataset_658275
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765328.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765328 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765328.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_765328/ public [Octocoral species abundances 2018] - Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-August 2018. (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-August 2018.\n\ncdm_data_type = Other\nVARIABLES:\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCensus_Year (unitless)\nTransect_Position (unitless)\nGenus_Species (unitless)\nSpecies_code (unitless)\nDate (unitless)\nSide_of_transect (unitless)\nMeter_on_transect (meters)\nGenus (unitless)\nHeight_of_living_tissue_cm (centimeters)\nTotal_height (centimeters)\nBasal_damage (centimeters)\nDamage (unitless)\nComments_1 (unitless)\nComments_2_sample_tag (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_765328_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_765328/index.htmlTable https://www.bco-dmo.org/dataset/765328 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_765328.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_765328&showErrors=false&email= BCO-DMO bcodmo_dataset_765328
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_751176.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_751176 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_751176.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_751176/ public [octocoral] - Octocoral species abundance during transect surveys at four sites on the south shore of St. John, US Virgin Islands from November to December 2017 (RAPID: Resilience of Caribbean octocorals following Hurricanes Irma and Maria) This dataset contains octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in November 2017 following Hurricanes Irma and Maria.\n\ncdm_data_type = Other\nVARIABLES:\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCensus_Year (unitless)\nDate (unitless)\nTransect_Position (meters (m))\nSide_of_transect (unitless)\nMeter_on_transect (meters (m))\nSpecies_code (unitless)\nHeight_of_living_tissue (centimeters (cm))\nTotal_Height (centimeters (cm))\nGenus_Species (unitless)\nGenus (unitless)\nSpecies (unitless)\nComments_1 (unitless)\nComments_2 (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_751176_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_751176/index.htmlTable https://www.bco-dmo.org/dataset/751176 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_751176.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_751176&showErrors=false&email= BCO-DMO bcodmo_dataset_751176
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768138 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768138/ public [Palau lakes: invertebrate barcodes] - Specimen log with OTU identifiers collected from Palau marine lakes (Do Parallel Patterns Arise from Parallel Processes?) List of all barcoded specimens of collected invertebrates with sequence name and OTU identifier collected from Palau marine lakes. FASTA files for major invertebrate groups are included in supplemental files.\n\ncdm_data_type = Other\nVARIABLES:\nOTU_id (unitless)\nID (unitless)\nlake_code (unitless)\nSequenceName (Sequence Name, unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nCRRF_ID (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768138/index.htmlTable https://www.bco-dmo.org/dataset/768138 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768138.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768138&showErrors=false&email= BCO-DMO bcodmo_dataset_768138
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768196 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768196/ public [Palau lakes: voucher summary] - Voucher summary of invertebrates and barcoded OTU's with field identifications, collected from Palau marine lakes (Do Parallel Patterns Arise from Parallel Processes?) Voucher summary of invertebrates and barcoded OTU's with field identifications, collected from Palau marine lakes.\n\ncdm_data_type = Other\nVARIABLES:\nCRRF_ID (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nID_name (unitless)\nOTU_id (specimens)\nlake_code (unitless)\ncomment (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768196/index.htmlTable https://www.bco-dmo.org/dataset/768196 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768196.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768196&showErrors=false&email= BCO-DMO bcodmo_dataset_768196
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_927230_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_927230_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_927230_v1/ public [Qualitative biodiversity survey of corals in Palau] - Community composition of corals in Palau determined by a qualitative survey conducted in 2021-2022 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?) Bottlenecks in the early life-history stages of corals can shape community composition across reefs. We used photographic surveys and the deployment of tiles to capture recruit, juvenile, and adult corals at 7 sites across Palau. Photographic surveys were undertaken using two methods: a qualitative biodiversity survey (2021–2022) and quantitative transects (2023). This dataset includes the results from the biodiversity survey.\n\ncdm_data_type = Other\nVARIABLES:\nSite (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nType (unitless)\nStage (unitless)\nGenus (unitless)\nAbundance (count of individuals)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_927230_v1/index.htmlTable https://www.bco-dmo.org/dataset/927230 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_927230_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_927230_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_927230_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_947067_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_947067_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_947067_v1/ public [Seasonal fatty acid profiles of marine algae and invertebrates from Sitka Sound, Alaska in 2019] - Seasonal fatty acid profiles of marine algae and invertebrates from Sitka Sound, Alaska in 2019 (CAREER: Energy fluxes and community stability in a dynamic, high-latitude kelp ecosystem) These data include fatty acid compositions of select marine macroalgae and macroinvertebrate grazers collected in Sitka Sound, Alaska in January 2019 and July 2019. Samples were collected using SCUBA at three sites, all within 6 km of each other in Sitka Sound: Harris Island (N 57.03165, W 135.27754), Breast Island (N 57.03896, W 135.33309), and Samsing Pinnacle (N 56.98750, W 135.35718). Sampled species included six seaweeds, including three Laminarian kelps (Ochrophyta) and three red algae from the Gigartinales and Ceramiales, that are present in both seasons in these sites: Neoagarum fimbriatum, Macrocystis pyrifera, Hedophyllum nigripes, Cryptopleura ruprechtiana, Opuntiella californica, and Osmundia spectabilis. They also include six macro-invertebrates (two each of gastropods, crustaceans, echinoderms) that are present and dominant herbivores in these sites: Haliotis kamtschatkana, Tegula pulligo, Pentidotea resecata, Pugettia producta, Mesocentrotus franciscanus, and Strongylocentrotus droebachiensis. \nUnderstanding seasonal variation in fatty acid trophic biomarkers between dominant macrophyte resources and their benthic herbivores can help reveal how producers and their primary consumers may respond to future environmental change. These unique data from a high latitude kelp forest ecosystem were collected by a collaborative team of marine ecologists: Dr. Reyn Yoshioka, Dr. Aaron Galloway, Dr. Julie Schram, Dr. Kristy Kroeker, and Dr. Lauren Bell.\n\ncdm_data_type = Other\nVARIABLES:\nsampleID (unitless)\nseason (unitless)\nsite (unitless)\nYear_Month (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nspCode (unitless)\ntype (unitless)\ngenus (unitless)\nspecies (unitless)\nLSID (unitless)\nlengthDia_comment (unitless)\n... (65 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_947067_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_947067_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_947067_v1/index.htmlTable https://www.bco-dmo.org/dataset/947067 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_947067_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_947067_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_947067_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926887_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926887_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_926887_v1/ public [Short-term heat stress assay Heron Island -  physiological data] - Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef  in Sept and Oct of 2022 (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress) Variable temperature regimes that expose corals to sub-lethal heat stress have been recognized as a mechanism to increase coral thermal tolerance and lessen coral bleaching. However, there is a need to better understand which thermal regimes maximize coral stress hardening. Here, standardized thermal stress assays were used to determine the relative thermal tolerance of three divergent genera of corals (Acropora, Pocillopora, Porites) originating from six reef sites representing an increasing gradient of annual mean diel temperature fluctuations of 1–3°C day-1. Bleaching severity and dark-acclimated photochemical yield (i.e., Fv/Fm) were quantified following exposure to five temperature treatments ranging from 23.0 to 36.3°C (see Related Datasets for temperature data). This data set contains photochemical yield and color score data used to determine effective dose 50 (ED50, thermal tolerance). It also includes images used for analysis of coral color, a proxy for bleaching severity.\n\ncdm_data_type = Other\nVARIABLES:\nSite_Code (unitless)\nSite_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nGenus (unitless)\nColonyID (unitless)\nTreatment_nonnum (unitless)\nTreatment (unitless)\nReplicate (unitless)\nTemperature (degrees Celsius (degC))\nF0 (unitless)\nFm (unitless)\nY (unitless)\nLabel (unitless)\nColor_type (unitless)\nColor (unitless)\nName (unitless)\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_926887_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_926887_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_926887_v1/index.htmlTable https://www.bco-dmo.org/dataset/926887 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_926887_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_926887_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_926887_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926911_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926911_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_926911_v1/ public [Short-term heat stress assay Heron Island - thermal tolerance comparison between studies] - Thermal tolerance (ED50) data used to compare previously published regional (Florida Reef Tract, Coral Sea, Red Sea) coral thermal tolerance with Heron Island, Great Barrier Reef values measured in 2022 (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress) Variable temperature regimes that expose corals to sub-lethal heat stress have been recognized as a mechanism to increase coral thermal tolerance and lessen coral bleaching. However, there is a need to better understand which thermal regimes maximize coral stress hardening. Here, standardized thermal stress assays were used to determine the relative thermal tolerance of three divergent genera of corals (Acropora, Pocillopora, Porites) originating from six reef sites representing an increasing gradient of annual mean diel temperature fluctuations of 1–3°C day-1. Bleaching severity and dark-acclimated photochemical yield (i.e., Fv/Fm) were quantified following exposure to five temperature treatments ranging from 23.0 to 36.3°C (see Related Datasets).  This data set contains the comparison of thermal tolerance across studies.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nGenus (unitless)\nSpecies (unitless)\nReef (unitless)\ned50 (degrees Celsius (degC))\nLower (degrees Celsius (degC))\nUpper (degrees Celsius (degC))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_926911_v1/index.htmlTable https://www.bco-dmo.org/dataset/926911 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_926911_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_926911_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_926911_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916958_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916958_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_916958_v1/ public [Siphonophore bulk stable isotopes] - Bulk stable isotopes from siphonophores collected during four research cruises on the R/V Wester Flyer in the California Current Ecosystem between 2019 and 2021 (Collaborative research: The effects of predator traits on the structure of oceanic food webs) Samples of siphonophores (Cnidaria, Hydrozoa) were collected using blue‑water diving, midwater trawls, and remotely operated vehicles in the California Current Ecosystem, from 0 to 3,000 meters depth. Siphonophore samples were collected on four research cruises on the R/V Wester Flyer between 2019-2021. To remove potential biases associated with tissue‑specific variability in stable isotope values, the gelatinous swimming bells (nectophores) of siphonophores were sampled. This approach was possible for most specimens, except for physonect species that are extremely fragile or have nectosomes that are a small fraction of the colony length and are often not collected. For these species (e.g., Apolemia spp.), the gelatinous bracts and pieces of the siphosome, excluding gastrozooids, were used. For small individuals (Diphyes dispar, Nanomia bijuga, and Sphaeronectes koellikeri), nectophores from several colonies that were captured at the same time and sampling location were pooled to obtain an adequate mass for isotope analyses. A subset of samples was selected for compound-specific isotope analysis of amino acids. These specific taxa were selected as representatives of different depth habitats, suborders, and hypothesized diets. Bulk and compound-specific isotope analyses were performed at the University of Hawaii's Biogeochemistry Stable Isotope Facility. This dataset includes the bulk stable isotope measurements along with metadata for specimens when possible (collection month and year, latitude, longitude, depth).\n\ncdm_data_type = Other\nVARIABLES:\nShip (unitless)\nChief_Scientist (unitless)\nCruise_Name (unitless)\nYear (unitless)\nMonth (unitless)\nFamily (unitless)\nGenus (unitless)\nBest_Taxonomic_ID (unitless)\ndepth (Depth_m, m)\nLatitude (degrees_north)\nlongitude (degrees_east)\nEAweight_mg (milligrams (mg))\n... (4 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_916958_v1/index.htmlTable https://www.bco-dmo.org/dataset/916958 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_916958_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_916958_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_916958_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_917239_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_917239_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_917239_v1/ public [Siphonophore CSIA-AA] - Compound-specific isotope analysis of amino acids (CSIA-AA) from a subset of siphophore samples collected during four research cruises on the R/V Wester Flyer in the California Current Ecosystem between 2019 and 2021 (Collaborative research: The effects of predator traits on the structure of oceanic food webs) Samples of siphonophores (Cnidaria, Hydrozoa) were collected using blue‑water diving, midwater trawls, and remotely operated vehicles in the California Current Ecosystem, from 0 to 3,000 meters depth. Siphonophore samples were collected on four research cruises on the R/V Wester Flyer between 2019-2021. To remove potential biases associated with tissue‑specific variability in stable isotope values, the gelatinous swimming bells (nectophores) of siphonophores were sampled. This approach was possible for most specimens, except for physonect species that are extremely fragile or have nectosomes that are a small fraction of the colony length and are often not collected. For these species (e.g., Apolemia spp.), the gelatinous bracts and pieces of the siphosome, excluding gastrozooids, were used. For small individuals (Diphyes dispar, Nanomia bijuga, and Sphaeronectes koellikeri), nectophores from several colonies that were captured at the same time and sampling location were pooled to obtain an adequate mass for isotope analyses. A subset of samples was selected for compound-specific isotope analysis of amino acids. These specific taxa were selected as representatives of different depth habitats, suborders, and hypothesized diets. Bulk and compound-specific isotope analyses were performed at the University of Hawaii's Biogeochemistry Stable Isotope Facility. This dataset includes the compound-specific isotope analysis data.\n\ncdm_data_type = Other\nVARIABLES:\nCollection_Date (unitless)\nYear (unitless)\nMonth (unitless)\nGenus (unitless)\nBest_Taxonomic_ID (unitless)\nAlanine (parts per thousand)\nGlycine (parts per thousand)\nThreonine (parts per thousand)\nSerine (parts per thousand)\nValine (parts per thousand)\nLeucine (parts per thousand)\nIsoleucine (parts per thousand)\nProline (parts per thousand)\n... (21 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_917239_v1/index.htmlTable https://www.bco-dmo.org/dataset/917239 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_917239_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_917239_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_917239_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_793259.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_793259 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_793259.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_793259/ public [St John Octocoral Abundances 2019] - Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands during June-October 2019 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) This dataset contains octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-October 2019.\\r\\n\\r\\nThese data are a continuation of BCO-DMO project 562086 (https://www.bco-dmo.org/project/562086) and BCO-DMO project 749653 (https://www.bco-dmo.org/project/749653).\n\ncdm_data_type = Other\nVARIABLES:\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCensus_Year (unitless)\ntime (seconds since 1970-01-01T00:00:00Z)\nTransect_Position (unitless)\nSide_of_transect (unitless)\nMeter_on_transect (unitless)\nGenus (unitless)\nSpecies_code (unitless)\nGenus_Species (unitless)\nHeight_of_living_tissue (centimeters (cm))\nTotal_height (centimeters (cm))\nBasal_damage (centimeters (cm))\nDamage (unitless)\nCyphoma_present (unitless)\nComments_1 (unitless)\nComments_2_sample_tag_number (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_793259_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_793259/index.htmlTable https://www.bco-dmo.org/dataset/793259 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_793259.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_793259&showErrors=false&email= BCO-DMO bcodmo_dataset_793259
log in [Subsurface Nitrospirota and Nitrospinota Origins] - Collection of subsurface bacteria Nitrospirota and Nitrospinota genome data including IMG and NCBI accessions for sequence datasets in June 2021 (Slow Life in Crust project) (Microbial activity in the crustal deep biosphere) The phyla Nitrospirota and Nitrospinota have received significant research attention due to their unique mitrogen metabolisms important to biogeochemical and industrial processes. These phyla are common inhabitants of marine and terrestrial subsurface environments and contain members capable of diverse physiologies in addition to nitrite oxidation and complete ammonia oxidation. We used phylogenomics and gene-based analysis with ancestral state reconstruction and gene-tree-species tree reconciliation methods to investigate the life histories of these two phyla. This dataset includes list of previously-published sequence datasets that were used for the analysis. The data and interpretations are published at DOI 10.1038/s41396-023-01397-x. Additional metadata such as NCBI accessions, assembly release dates, and NCBI taxon ids were added in December 2024.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nIMG_genome_id (unitless)\nGenBank_assembly (unitless)\nSample (unitless)\nCorrected_BioSample (unitless)\nBioProject (unitless)\nrelease_date (unitless)\nlast_updated_date (seconds since 1970-01-01T00:00:00Z)\npublication_date (seconds since 1970-01-01T00:00:00Z)\nDomain (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nNCBI_organism_taxid (unitless)\nIsolation_Source (unitless)\nIsolationPlot (unitless)\n... (11 more variables)\n BCO-DMO bcodmo_dataset_933610_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_564755 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_564755.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_564755/ public [Zooplankton from hypoxic waters of Chesapeake Bay] - Concentration of zooplankton, in particular copepods, from hypoxic waters collected by R/V Hugh R. Sharp cruises (HRS100524JP, HRS100819JP, HRS100920JP, HRS110525JP, HRS110719JP, HRS110922JP) in the Chesapeake Bay from 2010-2011 (DeZoZoo project) (Hypoxia in Marine Ecosystems: Implications for Neritic Copepods) These data represent a merging of electronic data collected from the MOCNESS\nsensor systems and the count data from the samples collected with the net\ntows. Some nets were used for zooplankton samples, while others were collected\nspecifically to estimate bay anchovy concentrations. (See associated dataset:[\nhttps://www.bco-dmo.org/dataset/563428](\\\\http://www.bco-\ndmo.org/dataset/563428\\\\).) These are contained on different sheets, and the\ncount data was merged individually.\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid (text)\ncruise_informal (text)\nyear (time)\nmonth_local (time)\ntow (text)\nday_local (time)\nnet (text)\ngear (text)\ntime_local (HH:MM)\nlatitude (degrees_north)\nlongitude (degrees_east)\nyrday_local (time)\nvol_filt (cubic meters)\ntemp (Temperature, degrees centrigrade)\nsal (PSU)\nO2_mg_L (milligrams per liter)\nfluor (milligrams per cubic meter)\nturbidity (NTU)\nPAR (Downwelling Photosynthetic Photon Radiance In Sea Water, microEinsteins per square meter per second)\nlat_end (Latitude, decimal degrees)\nlon_end (Longitude, decimal degrees)\n... (15 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_564755_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_564755/index.htmlTable https://www.bco-dmo.org/dataset/564755 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_564755.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_564755&showErrors=false&email= BCO-DMO bcodmo_dataset_564755

 
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