Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_945915_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_945915_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_945915_v1/ | public | [Metagenome sequencing samples] - Contextual data for samples collected for metagenome sequencing from the deep subseafloor biosphere as accessed via CORKs along the Juan de Fuca Ridge flank in the Northeast Pacific Ocean between 2008 and 2014 (Collaborative Research: Illuminating microbes and their viruses within the dark ocean crust through strain-level approaches) | This dataset provides contextual information about samples used for metagenome sequencing. These samples were collected from pristine crustal fluids sampled via CORK observatories along the Juan de Fuca Ridge flank in the Northeast Pacific Ocean off the coast of North America. Also included are metadata for seawater and sediment metagenomes that have been sequenced as controls. All of the data are publicly available via the National Center for Biotechnology Information (NCBI) accession numbers provided in the dataset (BioProject numbers PRJNA655018 to PRJNA655040).\n\ncdm_data_type = Other\nVARIABLES:\nSample_Type (unitless)\nSample_Name (unitless)\nDNA_Isolation_Method (unitless)\nCollection_Date (unitless)\nCollection_Year (unitless)\nCollection_Month (unitless)\nCollection_Day (unitless)\nSample_Source (unitless)\nFluid_Delivery_Line (unitless)\nEnvironment (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDepth (msb)\nArea (unitless)\nFull_Sample_Name_and_Description (unitless)\nIMG_Genome_ID (unitless)\nNCBI_Bioproject_Accession (unitless)\nNCBI_Biosample_Accession (unitless)\nSRA_ID (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_945915_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_945915_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_945915_v1/index.htmlTable | https://www.bco-dmo.org/dataset/945915
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_945915_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_945915_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_945915_v1 | |||
| log in | [Subsurface Nitrospirota and Nitrospinota Origins] - Collection of subsurface bacteria Nitrospirota and Nitrospinota genome data including IMG and NCBI accessions for sequence datasets in June 2021 (Slow Life in Crust project) (Microbial activity in the crustal deep biosphere) | The phyla Nitrospirota and Nitrospinota have received significant research attention due to their unique mitrogen metabolisms important to biogeochemical and industrial processes. These phyla are common inhabitants of marine and terrestrial subsurface environments and contain members capable of diverse physiologies in addition to nitrite oxidation and complete ammonia oxidation. We used phylogenomics and gene-based analysis with ancestral state reconstruction and gene-tree-species tree reconciliation methods to investigate the life histories of these two phyla. This dataset includes list of previously-published sequence datasets that were used for the analysis. The data and interpretations are published at DOI 10.1038/s41396-023-01397-x. Additional metadata such as NCBI accessions, assembly release dates, and NCBI taxon ids were added in December 2024.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nIMG_genome_id (unitless)\nGenBank_assembly (unitless)\nSample (unitless)\nCorrected_BioSample (unitless)\nBioProject (unitless)\nrelease_date (unitless)\nlast_updated_date (seconds since 1970-01-01T00:00:00Z)\npublication_date (seconds since 1970-01-01T00:00:00Z)\nDomain (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nNCBI_organism_taxid (unitless)\nIsolation_Source (unitless)\nIsolationPlot (unitless)\n... (11 more variables)\n | BCO-DMO | bcodmo_dataset_933610_v1 |