Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_737620_v3 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_737620_v3.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_737620_v3/ | public | [ProteOMZ Protein Level Spectral Counts] - Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean) | Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 56,577 protein identifications over 102 samples, for ~6 million data points.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (untiless)\nMS_MS_sample_name (untiless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_ymd (unitless)\ntime_hms (unitless)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\nprotein_id (unitless)\nspectral_count_sum (count)\nmolecular_weight_kDa (kDa)\nprotein_name (unitless)\nncbi_id (taxon)\nncbi_name (verbatimIdentifiation)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_737620_v3_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_737620_v3_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_737620_v3/index.htmlTable | https://www.bco-dmo.org/dataset/737620
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_737620_v3.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_737620_v3&showErrors=false&email= | BCO-DMO | bcodmo_dataset_737620_v3 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768237_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768237_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768237_v1/ | public | [Ross Sea metaproteome protein spectral counts] - Ross Sea metaproteome protein spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 (Controls of Ross Sea Algal Community Structure) | A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of protein spectral counts.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\ncruise_id (unitless)\nstation_id (unitless)\nlatitude_dd (degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndepth (Depth_m, m)\ndate_local (unitless)\ntime_local (unitless)\nminimum_filter_size_microns (microns (um))\nmaximum_filter_size_microns (microns (um))\nprotein_id (unitless)\nprotein_name (unitless)\nspectral_count (count)\nmolecular_weight_kDa (kilo-Daltons (kDa))\nncbi_id (unitless)\nncbi_name (unitless)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\nother_identified_proteins (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768237_v1/index.htmlTable | https://www.bco-dmo.org/dataset/768237
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768237_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768237_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_768237_v1 | |||||
| log in | [Total spectral count of proteins (MetZyme 0.2)] - Total spectral count of proteins from R/V Kilo Moana cruise KM1128 for the METZYME expedition in the tropical North Pacific in 2011. (Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03)) | Global metaproteomic dataset for KM1128 the METZYME expedition. The global proteome dataset presented here included 16951 protein identifications and 31994 unique peptide identifications compiled from 37 samples and 74 raw files (CID and HCD modes for each file) and ### total spectra.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nMS_MS_sample_name (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_y_m_d (unitless)\ntime_h_m_s (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\nprotein_id (unitless)\nspectral_count_sum (count)\nmolecular_weight_kDa (kilodalton (kDa))\nprotein_name (unitless)\nncbi_id (unitless)\nncbi_name (unitless)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\n | BCO-DMO | bcodmo_dataset_730722_v5 |