Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986266_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986266_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_986266_v1/ | public | [10m Virgin Island Reef Water Quality Metrics] - Water quality metrics collected from 10 meter reefs from around the U.S. Virgin Islands during April 2022 (Multi-scale multi-host disease spread project) (A multi-scale approach to predicting infectious multi-host disease spread in marine benthic communities) | These data include water quality metrics collected at 10-meter reef sites in the U.S. Virgin Islands (USVI) during April 2022. Two reefs were located near St. John (Haulover Bay and Coral Bay) and two near St. Croix (Cane Bay and Buck Island). Physical parameters were measured using an EXO Sonde, while water samples collected approximately 2 meters above the reefs were analyzed for inorganic nutrient concentrations, microbial cell abundances, total organic carbon (TOC), and total nitrogen (TN). Characterizing the physical and chemical properties of reef waters provides important context for understanding microbial community dynamics and their potential role in coral reef health and disease processes.\n\ncdm_data_type = Other\nVARIABLES:\nMission (unitless)\nSite (unitless)\nlatitude (Latitiude, degrees_north)\nlongitude (degrees_east)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nDate (unitless)\ndepth (Sampling_depth, m)\nTime_of_sonde (unitless)\nTemp (degrees Celcius)\nmmHg (millimeters of mercury (mmHg))\nDO_Percent (unitless)\nDO_Concentration (miligrams per liter (mg/L))\nSPC (microSiemens per centimeter (uS/cm))\nC (microSiemens per centimeter (uS/cm))\nSAL (parts per thousand (ppt))\npH (unitless)\nNTU (Nephelometric Turbidity Units (NTU))\nTSS (miligrams per liter (mg/L))\nDEP (meters (m))\nLab_ID_for_inorganic_nutrients (unitless)\n... (14 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_986266_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_986266_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_986266_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/986266
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_986266_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_986266_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_986266_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986272_v2 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986272_v2.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_986272_v2/ | public | [25m Virgin Island Reef Water Quality Metrics] - Water quality metrics collected from 25 meter reefs from around the U.S. Virgin Islands during May 2023 (Multi-scale multi-host disease spread project) (A multi-scale approach to predicting infectious multi-host disease spread in marine benthic communities) | Reef seawater was collected to quantify microbial cell abundances. Water samples were collected by SCUBA divers approximately 2 meters above the reef surface. Physical parameters, including temperature, salinity, dissolved oxygen, pH, and turbidity, were measured from the boat using an EXO2 multiparameter sonde. Sample processing will follow previously published methods (Becker et al., 2020; Weber et al., 2020). Collections were replicated across four sampling days.\n\ncdm_data_type = Other\nVARIABLES:\nMission (unitless)\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nDate (unitless)\ndepth (Sampling_depth, m)\nTime_of_sonde (unitless)\nTemp_C (degrees Celcius)\nmmHg (millimeters)\nDO_Percent (unitless)\nDO_Concentration (miligrams per liter (mg/L))\nSPC (microSiemens per centimeter (uS/cm))\nC (microSiemens per centimeter (uS/cm))\nSAL (parts per thousand (ppt))\npH (unitless)\nNTU (Nephelometric Turbidity Units (NTU))\nTSS (miligrams per liter (mg/L))\nDEP_m (m)\nLab_ID_for_cell_abundances (unitless)\npro (cells per milliliter (cells/mL))\nsyn (cells per milliliter (cells/mL))\npeuk (cells per milliliter (cells/mL))\nhbact (cells per milliliter (cells/mL))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_986272_v2_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_986272_v2_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_986272_v2/index.htmlTable | https://osprey.bco-dmo.org/dataset/986272
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_986272_v2.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_986272_v2&showErrors=false&email= | BCO-DMO | bcodmo_dataset_986272_v2 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911008_v1/ | public | [Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) | These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and water parameter information from samples used to develop the cultures, and growth medium.\nEach of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Accession (unitless)\nCulture_ID (unitless)\nGenus (unitless)\nSpecies (unitless)\nVariety (unitless)\nCollection_ID (unitless)\nMedia (unitless)\nCollection_Date (Month/Day/Year)\nLocation (unitless)\nSample_Type (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\nTemp (Celsius (°C))\nCond (Microsiemens / centimeter (μS/cm))\nTDS (Grams/liter (g/L))\npH (unitless)\nORP (Millivolts (mV))\nNTU (Nephelometric Turbidity Units (NTU))\nODO (Percentage saturation)\n... (6 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911008_v1/index.htmlTable | https://www.bco-dmo.org/dataset/911008
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911008_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911008_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_911008_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911441_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911441_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911441_v1/ | public | [Samples Sequenced for Metabarcoding] - Cyanobacterial and diatom samples collecteced between April and September 2022, and sequenced for metabarcodig of 16S and rbcL. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) | These data are the sample information for each of the samples collected for metabarcoding of 16S and rbcL to describe Cyanobacterial and diatom diversity, respectively, in three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Sample data are for sequenced samples and include their associated water parameter information that was collected simultaneously.\nEach of these sites are high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats, and further explored the bacterial communities as well. Our results provide novel information on microbial mat community composition, and present evidence that microbial biogeography influences these unique communities.\n\ncdm_data_type = Other\nVARIABLES:\nSampleID (unitless)\nCollection_ID (unitless)\nCollection_Date (unitless)\nLocation (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\nSample_Type (unitless)\nTemp (Celsius (°C))\nCond (Microsiemens / centimeter (μS/cm))\nTDS (Grams/liter (g/L))\npH (unitless)\nNTU (Nephelometric Turbidity Units (NTU))\nODO (Percentage saturation)\nODO_mg_L (Milligrams/liter (mg/L))\nCl_mg_L (Milligrams/liter (mg/L))\nSO4_mg_L (Milligrams/liter (mg/L))\nNO3_N_mg_L (Milligrams/liter (mg/L))\nSi_mg_L (Milligrams/liter (mg/L))\nSRP_P_mg_L (Milligrams/liter (mg/L))\nNCBI_BioProject (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911441_v1/index.htmlTable | https://www.bco-dmo.org/dataset/911441
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911441_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911441_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_911441_v1 |