BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
griddap Subset tabledap Make A Graph wms files Accessible Title Summary FGDC ISO 19115 Info Background Info RSS Email Institution Dataset ID
log in [16S microbiome data for artificial reef sponges and seawater] - 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 (Collaborative Research: Investigations into microbially mediated ecological diversification in sponges) Sponges are a dominant component of coral reefs worldwide and in the Caribbean, where their biomass exceeds that of reef-building corals. For almost a quarter century, the success of sponges in the Caribbean has been linked to their filter-feeding ability. However, recent work demonstrated that coexisting sponges on Caribbean reefs host unique communities of bacteria that might allow sponges to access multiple pools of nutrients that are not available to other organisms. In this project, the investigators will test the hypothesis that ecologically dominant sponge species in the Caribbean have unique metabolic strategies that are mediated by their associations with microbes that live within the sponge body.\n\nIn this dataset, we present the 16S rRNA microbiome NCBI accession and sample collection metadata for an artificial reef experiment where sponges of 10 species were placed on this temporary reef from April to August of 2021 and sampled using VacuSIP. VacuSIP methods capture incurrent (In) and excurrent (Ex) water from each sponge specimen. Incurrent represents the bacteria that are available for the sponge to consume via filter feeding and excurrent represents the bacteria that remain once sponges have consumed their preferred taxa. Additionally, we have provided microbiome metadata for the host sponges for several of these paired In/Ex samples. See the related dataset, NCBI Bioproject PRJNA1179970, for all sequence data. Microbiome data was generated using protocols from the Earth Microbiome project and sequencing was conducted on an Illumina MiSeq at Middle Tennessee State University. The data available at NCBI represents raw sequencing data, and no quality checks or sequencing filtering has been done on the uploaded sequences.\n\ncdm_data_type = Other\nVARIABLES:\ncollection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\naccession (unitless)\nsample_name (unitless)\nspecies_ab (unitless)\nsample_type (unitless)\norganism (unitless)\n... (6 more variables)\n BCO-DMO bcodmo_dataset_953999_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_935908_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_935908_v1/ public [Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish] - Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish collected on the north shore of Mo’orea, French Polynesia, Oct 2020 (CAREER: Testing the effects of predator-derived feces on host symbiont acquisition and health) Understanding how microbial communities in consumer feces may impact ecosystem health may improve conservation and restoration efforts. To test how microbial communities in fish feces may affect coral reef health, we collected fecal samples from ten fish species, ranging from obligate corallivore to grazer/detritivore. Additionally, samples of corals, algae, sediments, and seawater were collected to test whether bacterial taxa in these samples were also represented in fish feces (N = 5-14 per fish, coral, or algae species/genus). All collections were conducted in October 2020 from the back reef (1-2 m depth) and fore reef (5-10 m depth) in Moorea, between LTER sites 1 and 2 of the Moorea Coral Reef (MCR) Long Term Ecological Research (LTER) site. We conducted bacterial 16S rRNA gene metabarcoding on all samples and found that fecal communities of bacteria differed among fish guilds (obligate corallivores, facultative corallivores, grazer/detritivores). We also used real-time PCR to quantify abundances of Vibrio coralliilyticus, a known coral pathogen,  in all fecal samples. Samples were collected and processed, and data were analyzed, by the authors of Grupstra et al., 2023.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nSRA (unitless)\nBioSample (unitless)\norganism (unitless)\nstrain (unitless)\nisolation_source (unitless)\ncollection_date (unitless)\ngeo_loc_name (unitless)\ndepth_r (Depth, m)\nenv_broad_scale (unitless)\nhost_description (unitless)\nhost_tissue_sampled (unitless)\nhost_diet (unitless)\nhost_feces_dCT (cycles)\nhost_AphiaID (unitless)\nhost_ScientificName (unitless)\nhost_LSID (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_935908_v1/index.htmlTable https://www.bco-dmo.org/dataset/935908 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_935908_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_935908_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_935908_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928636_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_928636_v1/ public [Ca. Aquarickettsia rohweri transcriptomes] - Sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) This dataset contains sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome sequences housed at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA1048415. All host colonies (Acropora cervicornis genotype ML-50) were collected from the same location, the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys between April and June of 2019.\n\nThe Rickettsiales-like bacterial parasite, 'Candidatus' Aquarickettsia rohweri (NCBI:txid2602574) is a ubiquitous coral symbiont that is strongly linked to coral disease susceptibility in staghorn coral, and is undergoing positive selection across the Caribbean. Although ‘Ca.' A. rohweri is a putative parasite, little is known about the activity of this bacterium in coral tissue. We performed a transcriptomic analyses of ‘Ca.' A. rohweri populations during a 6-week nutrient exposure experiment.  ‘Ca.' A. rohweri energy scavenging genes and those potentially involved during habitat transition are significantly upregulated during enrichment. Specifically, transcripts involved in signaling, virulence, two-component systems, and nutrient import genes are elevated under higher nutrients. These data support the predicted role of ‘Ca.' A. rohweri as a highly active nutrient-responsive A. cervicornis parasite and provide a glimpse at the mechanism of induced disease susceptibility while implicating nutrient exposure in its horizontal transmission.\n\ncdm_data_type = Other\nVARIABLES:\nSample_name (unitless)\nBioSample_Accession (unitless)\nSRA (unitless)\nBioProject (unitless)\nData_Type (unitless)\nScope (unitless)\nOrganism (unitless)\nCollected_Host_Organism (unitless)\nStrain (unitless)\nisolation_source (unitless)\nCollection_Year (unitless)\nCollection_date_note (unitless)\nTreatment (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_928636_v1/index.htmlTable https://osprey.bco-dmo.org/dataset/928636 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_928636_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_928636_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_928636_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_928039_v1/ public [Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux) Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.\n\ncdm_data_type = Other\nVARIABLES:\nBottle_ID (unitless)\nTreatment (unitless)\nTime_h (hour (h))\nMicromonas_cells_ml (cells per milliliter (cell/ml))\nBacteria_cells_ml (cells per milliliter (cell/ml))\nNH4_uM (micromolar (uM))\nNO3_uM (micromolar (uM))\nPO4_uM (micromolar (uM))\nNCBI_Sample_ID (unitless)\nAccession (unitless)\nBioProject (unitless)\nOrganism (unitless)\nTaxonomy_ID (unitless)\nDescription (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_928039_v1/index.htmlTable https://www.bco-dmo.org/dataset/928039 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_928039_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_928039_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_928039_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_845039_v2 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_845039_v2.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_845039_v2/ public [Coral Associated Microbes on Mo'orean Coral Reefs] - Coral associated microbes on coral, sediment and water sampled from coral reefs in Mo'orea, French Polynesia in 2017 and 2018 (Collaborative Research: Viral Reefscapes: The Role of Viruses in Coral Reef Health, Disease, and Biogeochemical Cycling) Three species of coral, plus water and sediment, were sampled at 21 sites around the island of Mo'orea, French Polynesia during the dry and rainy seasons in 2017 and 2018.  Coral associated microbes (bacteria and archaea) were investigated and their community composition characterized through sequencing of the 16S rRNA gene.\n\ncdm_data_type = Other\nVARIABLES:\nBioSample_accession (unitless)\nSample_name (unitless)\nOrganism (unitless)\nCollection_date (unitless)\nDepth (meters (m))\nEnv_Local_Scale (unitless)\nGeo_Loc_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nHost (unitless)\nHost_Subject_ID (unitless)\nSequencing_Replicate (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_845039_v2_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_845039_v2_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_845039_v2/index.htmlTable https://www.bco-dmo.org/dataset/845039 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_845039_v2.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_845039_v2&showErrors=false&email= BCO-DMO bcodmo_dataset_845039_v2
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_657866 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_657866.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_657866/ public [Coral pyrosequencing data] - Microbial communities of corals analyzed using 454 Illumina pyrosequencing from Wonderland Reef, Florida in 2013 (Are coral diseases contagious?) Microbial communities of corals analyzed using 454 Illumina pyrosequencing from Wonderland Reef, Florida in 2013\n\ncdm_data_type = Other\nVARIABLES:\norganism (unitless)\nmeasurement (unitless)\ntaxon_level (unitless)\ntaxon (unitless)\nD4U (D4 U, percent or count)\nD13U (D13 U, percent or count)\nD27U (D27 U, percent or count)\nY11U (Y11 U, percent or count)\nY26U (Y26 U, percent or count)\nY27U (Y27 U, percent or count)\nD1L (D1 L, percent or count)\nD3L (D3 L, percent or count)\nD22L (D22 L, percent or count)\nY4L (Y4 L, percent or count)\nY23L (Y23 L, percent or count)\nY9L (Y9 L, percent or count)\nD1U (D1 U, percent or count)\nD3U (D3 U, percent or count)\nD22U (D22 U, percent or count)\nY4U (Y4 U, percent or count)\nY23U (Y23 U, percent or count)\nY9U (Y9 U, percent or count)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_657866/index.htmlTable https://www.bco-dmo.org/dataset/657866 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_657866.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_657866&showErrors=false&email= BCO-DMO bcodmo_dataset_657866
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_654295.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_654295 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_654295.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_654295/ public [Delta Nitrification Study - GenBank Accession Numbers] - GenBank accession numbers for ammonia oxidizer genes collected on the R/V Endeavor (SQO-Delta) in the San Francisco Bay Delta during September and October 2007. (Spatial and Temporal Dynamics of Nitrogen-Cycling Microbial Communities Across Physicochemical Gradients in the San Francisco Bay Estuary) GenBank accession numbers for ammonia oxidizer genes collected on the R/V Endeavor (SQO-Delta) in the San Francisco Bay Delta during September and October 2007.\n\ncdm_data_type = Other\nVARIABLES:\ngene (unitless)\nstation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\norganism (unitless)\naccession_numbers (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_654295_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_654295/index.htmlTable https://www.bco-dmo.org/dataset/654295 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_654295.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_654295&showErrors=false&email= BCO-DMO bcodmo_dataset_654295
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908689_v1/ public [Gulf of Alaska copepods: annotated transcriptomes] - Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads. The species are ecologically-important members of sub-arctic North Pacific marine zooplankton communities. The de novo assemblies included one generated several years ago plus eight new ones generated from six co-occurring species of calanoid copepods in the Gulf of Alaska. The transcriptomes include the first published ones for Neocalanus plumchrus, Neocalanus cristatus, Eucalanus bungii and Metridia pacifica and three for Neocalanus flemingeri and two for Calanus marshallae. Total RNA from single individuals was used to construct gene libraries that were sequenced on an Illumina Next-Seq platform. Short-sequence reads were assembled with Trinity software and resulting transcripts were annotated using the SwissProt database with additional functional annotation using gene ontology terms and enzyme function. The annotations files are the first ones published for these species. The integrated dataset can be used for quantitative inter- and intra-species comparisons of gene expression patterns across biological processes using the annotations.\n\nThese data are further described in the following publications: Hartline, et al. (2023) (DOI: 10.1038/s41597-023-02130-1), Roncalli, et al. (2022) (DOI: 10.1111/mec.16354), and Roncalli, et al. (2019) (DOI: 10.1038/s42003-019-0565-5)\n\ncdm_data_type = Other\nVARIABLES:\nseq_id (unitless)\nGenbank_accession (unitless)\nSpecies (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\nDepth_range (meters (m))\nLife_stage (unitless)\nSex (unitless)\nEntry (unitless)\n... (20 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_908689_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_908689_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908689_v1/index.htmlTable https://www.bco-dmo.org/dataset/908689 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908689_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908689_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908689_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747872.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747872 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747872.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_747872/ public [Heterosigma akashiwo acclimation] - NCBI accessions of the harmful alga Heterosigma akashiwo (CCMP2393) grown under a range of CO2 concentrations from 200-1000 ppm (Impacts of Evolution on the Response of Phytoplankton Populations to Rising CO2) This dataset includes metadata associated with NCBI BioProject PRJNA377729 \\Impacts of Evolution on the Response of Phytoplankton Populations to Rising CO2\\ PRJNA377729: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA377729. The alga Heterosigma akashiwo was grown at CO2 levels from about 200 to 1000 ppm and then the DNA and RNA were sequenced.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nsample_title (unitless)\nbioproject_accession (unitless)\norganism (unitless)\nstrain (unitless)\nisolate (unitless)\nhost (unitless)\nisolation_source (unitless)\ntime (Collection Date, seconds since 1970-01-01T00:00:00Z)\ngeo_loc_name (unitless)\nsample_type (unitless)\nbiomaterial_provider (unitless)\ncollected_by (unitless)\ndepth (m)\nenv_biome (unitless)\ngenotype (unitless)\nlat_lon (Latitude, decimal degrees)\npassage_history (unitless)\nsamp_size (unitless)\ntemp_C (degrees Celsius)\nlight_level_umol_m2_s (micromol photons m-2 s-1)\nlight_dark_hr (hours)\nMedia (unitless)\nCO2_ppm (parts per million)\nAlkalinity (micromol per kilogram (umol/kg))\npH (Sea Water Ph Reported On Total Scale, unitless; pH scale)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_747872/index.htmlTable https://www.bco-dmo.org/dataset/747872 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_747872.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_747872&showErrors=false&email= BCO-DMO bcodmo_dataset_747872
log in [Intertidal community: California and Baja California] - Intertidal community diversity surveys at 23 sites in California, USA and Baja California, Mexico across tidal elevations from 2022-2023 (Predicting impacts of coastal species redistribution in a changing climate) This dataset includes information on over 100 species found in the intertidal zone on a rocky shoreline during community surveys conducted at 23 sites along the coast of California and Baja California, Mexico in 2022 and 2023. Community survey data includes visual estimates of percent area covered by various species with corresponding season and tide height.\n\ncdm_data_type = Other\nVARIABLES:\nRegion (unitless)\nSite (unitless)\nlatitude (degrees_north)\nlongitude (Long, degrees_east)\nSurvey_Date (unitless)\nSeason (unitless)\nVert_Transect_Dist (meters (m))\nQuad_Dist (meters (m))\nTH_Transect_Top (meters (m))\nQuad_TH (meters (m))\nPct_Pool (percent (%))\nBare_Space (percent (%))\nOrganism_parameter (unitless)\nOrganism (unitless)\nCoverage (percent (%))\n BCO-DMO bcodmo_dataset_935622_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658497.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658497 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_658497.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_658497/ public [Isolation culturing and sequencing of bacteria and viruses] - Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project) (How can bacterial viruses succeed in the marine environment?) Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project)\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nenv_biome (unitless)\ngeo_loc_name (unitless)\norganism_type (unitless)\ncollection_date (unitless)\nisolation_source (unitless)\nsample_name (unitless)\norganism (unitless)\nstrain (unitless)\nisolate (unitless)\nhost (unitless)\nlab_host (unitless)\nsample_type (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntemp (Temperature, degrees celsius)\nordinal_day_of_isolation (unitless)\ndescription (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_658497_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_658497/index.htmlTable https://www.bco-dmo.org/dataset/658497 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_658497.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_658497&showErrors=false&email= BCO-DMO bcodmo_dataset_658497
log in [Kelletia kelletii: DNA and RNA sequence] - Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion) Understanding the genomic characteristics of non-model organisms can bridge research gaps between ecology and evolution. However, the lack of a reference genome and transcriptome for these species makes their study challenging. Here, we complete the first full genome and transcriptome sequence assembly of the non-model organism Kellet's whelk, Kelletia kelletii, a marine gastropod exhibiting a poleward range expansion coincident with climate change. We used a combination of Oxford Nanopore Technologies, PacBio, and Illumina sequencing platforms and integrated a set of bioinformatic pipelines to create the most complete and contiguous genome documented among the Buccinoidea superfamily to date. Genome validation revealed relatively high completeness with low missing metazoan Benchmarking Universal Single-Copy Orthologs (BUSCO) and an average coverage of ∼70x for all contigs. Genome annotation identified a large number of protein-coding genes similar to some other closely related species, suggesting the presence of a complex genome structure. Transcriptome assembly and analysis of individuals during their period of peak embryonic development revealed highly expressed genes associated with specific Gene Ontology (GO) terms and metabolic pathways, most notably lipid, carbohydrate, glycan, and phospholipid metabolism. We also identified numerous heat shock proteins (HSPs) in the transcriptome and genome that may be related to coping with thermal stress during the sessile life history stage. A robust reference genome and transcriptome for the non-model organism K. kelletii provide resources to enhance our understanding of its ecology and evolution and potential mechanisms of range expansion for marine species facing environmental changes.\n\ncdm_data_type = Other\nVARIABLES:\nRun (unitless)\nAssay_Type (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\nBioProject (unitless)\nBioSample (unitless)\nBioSampleModel (unitless)\nBytes (unitless)\nCenter_Name (unitless)\n... (29 more variables)\n BCO-DMO bcodmo_dataset_945292_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756997.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756997 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756997.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_756997/ public [Microbial community composition of the Cinder Cones Cold Seep] - Microbial community composition from 16s V4 region amplicon sequencing of the methane Seep at the Cinder Cones Cold Seep site, Nov 2016 (EAGER: Elucidating the Antarctic Methane Cycle at the Cinder Cones Reducing Habitat) This dataset includes microbial community composition from 16s V4 region amplicon sequencing on 151 marine sediment community samples collected from the Cinder Cones Cold Seep site [-77.8, 166.666] in the Ross Sea region, Antarctica in November 2016. Data are uploaded to the NCBI Sequence Read Archive under submission SUB2655615 [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA387720] with a subset of the data from that archive originating from this project.\n\ncdm_data_type = Other\nVARIABLES:\naccession (unitless)\nsample_name (unitless)\norganism (unitless)\nhost (unitless)\ntime (Collection Date, seconds since 1970-01-01T00:00:00Z)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nReplicate (unitless)\nSediment_Depth_cm (centimeters)\nHabitat (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_756997_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_756997/index.htmlTable https://www.bco-dmo.org/dataset/756997 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_756997.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_756997&showErrors=false&email= BCO-DMO bcodmo_dataset_756997
log in [Northern California Current Microorganisms] - 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 (Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey) The Northern California Current ecosystem is a productive system which supports major fisheries. To determine how the microbial community responds to variable upwelling, we examined the 16S rRNA gene of microorganisms from two size fractions, 0.2-1.6µm and greater than 1.6µm along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nmessage (unitless)\nsample_name (unitless)\norganism (unitless)\ncollection_date (unitless)\ndepth (m)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nlatitude (Sampling_lat, degrees_north)\nlongitude (Sampling_lon, degrees_east)\nsize_frac (unitless)\nsra_run_accession (unitless)\nsra_study_accession (unitless)\nobject_status (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\n... (5 more variables)\n BCO-DMO bcodmo_dataset_926850_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_555780 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_555780.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_555780/ public [rocky intertidal biomimic] - Environmental data collected from biomimetic and other data loggers located in rocky intertidal zones of global oceans between July 1999 and October 2013 (Environmental signal analysis: Monitoring the impacts of climate change on rocky intertidal ecosystem across a cascade of scales) Environmental data (water temp, air temp, etc.) from biomimic devices and\nother loggers located in the rocky intertidal zone.\n\ncdm_data_type = Other\nVARIABLES:\nbiomimic (text)\ncountry (text)\nstate_province (text)\nsite_id (text)\nsite_name (text)\nlatitude (degrees_north)\nlongitude (degrees_east)\nzone (text)\nsub_zone (text)\nwave_exp (text)\nmicrosite_id (text)\norganism (unitless)\nfiledate (unitless)\ndata_description (unitless)\ndate (unitless)\ntime2 (Time, unitless)\nvalue (refer to data_description)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_555780_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_555780/index.htmlTable https://www.bco-dmo.org/dataset/555780 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_555780.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_555780&showErrors=false&email= BCO-DMO bcodmo_dataset_555780
log in [Salp and pteropod associated microorganisms] - Salp and pteropod associated microorganisms from the  Western Edge of the Gulf Stream sampled in September 2019. (Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey) Microbial mortality impacts the structure of food webs, carbon flow, and the interactions that create dynamic patterns of abundance across gradients in space and time in diverse ecosystems. In the oceans, estimates of microbial mortality by viruses, protists, and small zooplankton do not account fully for observations of loss, suggesting the existence of underappreciated mortality sources. We examined how ubiquitous mucous mesh feeders (i.e. gelatinous zooplankton) could contribute to microbial mortality in the open ocean. We coupled capture of live animals by blue-water diving to sequence-based approaches to measure the enrichment and selectivity of feeding by two coexisting mucous grazer taxa (pteropods and salps) on numerically dominant marine prokaryotes. We show that mucous mesh grazers consume a variety of marine prokaryotes and select between coexisting lineages and similar cell sizes. We show that Prochlorococcus may evade filtration more than other cells and that planktonic archaea are consumed by macrozooplanktonic grazers. Discovery of these feeding relationships identifies a new source of mortality for Earth's dominant marine microbes and alters our understanding of how top-down processes shape microbial community and function.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nmessage (unitless)\nsample_name (unitless)\nsample_title (unitless)\norganism (unitless)\ncollection_date (unitless)\ndepth_f (Depth, feet)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nlatitude (Sampling_lat, degrees_north)\nlongitude (Sampling_lon, degrees_east)\n... (15 more variables)\n BCO-DMO bcodmo_dataset_926841_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916134_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916134_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_916134_v1/ public [Substrate-specific metabolic responses of model marine bacteria] - Metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates (C-CoMP Model Bacteria Physiological Studies) This dataset includes metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw RNA sequences (50 bp reads in fastq format) have been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA972985 (https://www.ncbi.nlm.nih.gov/bioproject/972985).\n\ncdm_data_type = Other\nVARIABLES:\nSample_Name (unitless)\nAccession (unitless)\nBioProject (unitless)\nOrganism (unitless)\nStrain (unitless)\nTax_ID (unitless)\nGlucose_initial_concentration_uM (micromolar concentration)\nAcetate_initial_concentration_uM (micromolar concentration)\nSample_description (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_916134_v1/index.htmlTable https://www.bco-dmo.org/dataset/916134 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_916134_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_916134_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_916134_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_814713 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_814713.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_814713/ public [Sulfonates in plankton cultures] - Intracellular sulfonate metabolites measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics (OCE-PRF Track 1 (Broadening Participation): Cryptic Sulfonate Cycling between Marine Phytoplankton and Heterotrophic Bacterioplankton) Intracellular sulfonate metabolites were measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics. These data have been published in Durham et al. (2019). Raw data are available at Metabolomics Workbench under Project ID PR000797.\n\ncdm_data_type = Other\nVARIABLES:\nOrganism (unitless)\nreplicate (unitless)\ncells_filtered (unitless)\nDHPS (amol per cell)\ncysteic_acid (amol per cell)\nsulfolactate (amol per cell)\nisethionic_acid (amol per cell)\ntaurine (amol per cell)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_814713/index.htmlTable https://www.bco-dmo.org/dataset/814713 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_814713.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_814713&showErrors=false&email= BCO-DMO bcodmo_dataset_814713
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782301/ public [Synechococcus accessions] - NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay, July 2017 (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients) NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay.\n\ncdm_data_type = Other\nVARIABLES:\nAccession (unitless)\nSample_Name (unitless)\nSPUID (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nIsolate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_782301_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782301/index.htmlTable https://www.bco-dmo.org/dataset/782301 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782301.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782301&showErrors=false&email= BCO-DMO bcodmo_dataset_782301
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739636.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739636 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739636/ public [Thaumarchaea transcriptomes] - Nitrosopelagicus brevis CN25 and U25 grown in nitrogen replete and deplete conditions, with subsequent transcriptome sequencing and identification. (Gene content, gene expression, and physiology in mesopelagic ammonia-oxidizing archaea) Nitrosopelagicus brevis CN25 and U25 were grown in nitrogen replete and deplete conditions, with subsequent transcriptome sequencing.\n\ncdm_data_type = Other\nVARIABLES:\nAccession (unitless)\nSample_Name (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nStrain (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739636/index.htmlTable https://www.bco-dmo.org/dataset/739636 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739636.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739636&showErrors=false&email= BCO-DMO bcodmo_dataset_739636
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934800_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934800_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_934800_v1/ public [Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath) Outbreaks of sea star wasting (SSW) have killed millions of sea stars across over 20 taxa in the last decade alone, threatening the health and stability of coastal communities around the world. While the causative agent remains unknown, it has recently been postulated that hypoxia exposure may play a dominant role in the onset of SSW. We leveraged a study that subjected ochre sea stars to organic matter amendment in a controlled laboratory setting to induce hypoxia and used a repeated sampling design to collect non-invasive tissue samples from both healthy and wasting individuals. Following tag-based RNAseq (TagSeq), we analyzed differential gene expression (DGE) patterns among and within these individuals sampled strategically throughout the 15-day experiment. Transcriptional profiles reveal a progressive change in gene expression accompanying the advancement of SSW, reflecting a transition from asymptomatic stars to the onset of characteristic SSW lesions that progressively worsen until, in some cases, the star dies of their symptoms. Included in this dataset is the accession information for 89 individual TagSeq samples across 20 individual Pisaster ochraceus sea stars at multiple time points during the study to make them available for subsequent re-evaluation. The sequence data have been deposited into the NCBI archive under BioProject PRJNA1116313 and will be publicly available on 2025-08-01.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nbioproject_accession (unitless)\nbioproject_ncbi (unitless)\nassay_type (unitless)\norganism (unitless)\nisolate_id (unitless)\nisolation_source (unitless)\ncollection_date (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntissue (unitless)\nbiomaterial_provider (unitless)\ncollected_by (unitless)\nhost_tissue_sampled (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_934800_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_934800_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_934800_v1/index.htmlTable https://www.bco-dmo.org/dataset/934800 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_934800_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_934800_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_934800_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949777_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949777_v1/ public [Transcriptomics of Phytoplankton Cultures Grown on Various Phosphorus Sources] - Transcriptomics of phytoplankton cultures grown on various phosphorus sources in a laboratory experiment (Phosphonate Utilization by Eukaryotic Phytoplankton: Who, How, and Where?) A laboratory experiment was carried out to characterize the growth and physiological response of three species of eukaryotic phytoplankton grown with inorganic phosphate (+P), without phosphate (-P), and with methylphosphonate (+MPN) and aminoethylphosphonate (+AEPN) as the sole sources of phosphorus (P). Data reported in this dataset are the transcriptomic reads, in biological triplicate, of these culture growth substrate combinations.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBiosample (unitless)\nTreatment (unitless)\nReplicate (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nStrain (unitless)\nURL (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949777_v1/index.htmlTable https://www.bco-dmo.org/dataset/949777 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949777_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949777_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_949777_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934772_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934772_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_934772_v1/ public [Whole genome sequence data for Pisaster ochraceus] - Whole genome sequence data for Pisaster ochranceus samples collected from the Pacific coast of North America from July 2004 to May 2018 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath) This dataset includes collection and accession information for whole genome sequence (WGS) data from 65 Pisaster ochraceus (ochre sea star) collected across latitudes ranging from SE Alaska to southern California. The sequence data have been deposited into NCBI SRA archive under BioProject PRJNA1117092 and will be publicly available on 2025-08-01. These data are used to evaluate the population genomic diversity and divergence of spatially and environmentally separated populations of Pisaster ochraceus.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nbioproject_accession (unitless)\nbioproject_ncbi (unitless)\nassay_type (unitless)\norganism (unitless)\nisolation_source (unitless)\ncollection_date (unitless)\niso_collection_date (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntissue (unitless)\nbiomaterial_provider (unitless)\ncollected_by (unitless)\nhost_tissue_sampled (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_934772_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_934772_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_934772_v1/index.htmlTable https://www.bco-dmo.org/dataset/934772 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_934772_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_934772_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_934772_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924786_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924786_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_924786_v1/ public [Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay] - Sample collection information and sequence accessions at the National Center for Biotechnology Information (NCBI) for whole genome sequencing of eelgrass (Zostera marina) collected at Bodega and Tomales Bay, CA, USA from July to September 2019 (Using genomics to link traits to ecosystem function in the eelgrass Zostera marina) This dataset includes sample collection information and sequence accessions at the National Center for Biotechnology Information (NCBI) for whole genome sequencing of eelgrass (Zostera marina) collected at Bodega and Tomales Bay, California, USA from July and September of 2019. Sequence Read Archive (SRA) Experiments and BioSamples can be accessed from the NCBI BioProject PRJNA887384 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA887384/).\n\nResults summary as described in Scheibelhut, et al. (2023): We examine genomic signals of selection in the eelgrass Zostera marina across temperature gradients in adjacent embayments. Although we find many genomic regions with signals of selection within each bay there is very little overlap in signals of selection at the SNP level, despite most polymorphisms being shared across bays. We do find overlap at the gene level, potentially suggesting multiple mutational pathways to the same phenotype. Using polygenic models we find that some sets of candidate SNPs are able to predict temperature across both bays, suggesting that small but parallel shifts in allele frequencies may be missed by independent genome scans. Together, these results highlight the continuous rather than binary nature of parallel evolution in polygenic traits and the complexity of evolutionary predictability.\n\ncdm_data_type = Other\nVARIABLES:\naccession (unitless)\nsample_name (unitless)\nbioproject_accession (unitless)\nSite (unitless)\norganism (unitless)\ncollection_date (unitless)\nisolation_source (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_924786_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_924786_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_924786_v1/index.htmlTable https://www.bco-dmo.org/dataset/924786 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_924786_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_924786_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_924786_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_744468 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_744468/ public [Zooplankton/phytoplankton CSIA-AA] - CSIA 15N AA data from phytoplankton, microzooplankton, and Calanus pacificus. (Resolving the trophic connection between protistan grazers and mesozooplankton in marine food webs using amino acid-specific stable isotope analyses) CSIA 15N AA data from phytoplankton, microzooplankton, and Calanus pacificus.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nOrganism (unitless)\nstage (unitless)\nbulk_d15N (Bulk D15 N, per mil)\nAla_d15N (Ala D15 N, per mil)\nAsp_d15N (Asp D15 N, per mil)\nGlu_d15N (Glu D15 N, per mil)\nIsoL_d15N (Iso L D15 N, per mil)\nLeu_d15N (Leu D15 N, per mil)\nPro_d15N (Pro D15 N, per mil)\nVal_d15N (Val D15 N, per mil)\nGly_d15N (GLY D15 N, per mil)\nLys_d15N (LYS D15 N, per mil)\nPhe_d15N (Phe D15 N, per mil)\nSer_d15N (Ser D15 N, per mil)\nThr_d15N (THR D15 N, per mil)\nNote_Organism (unitless)\nNote_bulk_d15N (Note Bulk D15 N, unitless)\nNote_Gly_d15N (Note Gly D15 N, unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_744468/index.htmlTable https://www.bco-dmo.org/dataset/744468 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_744468.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_744468&showErrors=false&email= BCO-DMO bcodmo_dataset_744468

 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact