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griddap Subset tabledap Make A Graph wms files Accessible Title Summary FGDC ISO 19115 Info Background Info RSS Email Institution Dataset ID
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914399_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914399_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_914399_v1/ public [Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset] - 18S rRNA amplicon sequencing of microbial eukaryotes from the Mid-Cayman Rise acquired Jan-Feb, 2020 (Probing subseafloor microbial interactions via hydrothermal vent fluids: A focus on protists) Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from two geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. Piccard and Von Damm vent fields are situated 20 km apart at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. This data adds to our growing knowledge of the biogeography of deep-sea microbial eukaryotes.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nInstrument (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\nSample_Accession (unitless)\nTotal_Size_Mb (Mb)\nTotal_Bases (bp)\nLibrary_Name (unitless)\nLibrary_Strategy (unitless)\nLibrary_Source (unitless)\nLibrary_Selection (unitless)\nVent_field (unitless)\nCollection (unitless)\nVent_name (unitless)\nDiveID (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_914399_v1/index.htmlTable https://www.bco-dmo.org/dataset/914399 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_914399_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_914399_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_914399_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922330_v1/ public [Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) High-throughput sequencing study of field-collected Neocalanus flemingeri pre-adults (stage CV) and adult females between 2015 and 2022. Dataset includes information and accession numbers of the raw sequence reads. Zooplankton collections were made in the northern Gulf of Alaska in collaboration with the Seward Long-term Monitoring Program and the northern Gulf of Alaska Long-term Ecological Research Program (LTER). Pre-adults were collected during the spring from multiple stations, sorted from net collections and immediately preserved. Adult females were collected mostly from Prince William Sound, but also on one occasion from the Gulf of Alaska. Adult females were collected from depth during diapause and preserved upon net retrieval.  In addition, time series data were generated in three different years to characterize the post-diapause period through the spawning phase. The purpose of the data collection is to generate gene expression profiles during different years and seasons to evaluate developmental stage and physiological state.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDepth_Range (meters (m))\nDate (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nLife_Stage (unitless)\nSex (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSample_Accession (unitless)\nSRA_Run_Accession (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922330_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922330_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922330_v1/index.htmlTable https://www.bco-dmo.org/dataset/922330 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922330_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922330_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922330_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914459_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914459_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_914459_v1/ public [Neocalanus flemingeri incubation experiment:  gene expression] - Gene expression profiles for Neocalanus flemingeri pre adults (CV) exposed to four different experimental food conditions collected from the M/V Dora in the Gulf of Alaska at station GAK1 from April 2019 (Collaborative Research: Molecular profiling of the ecophysiology of dormancy induction in calanid copepods of the Northern Gulf of Alaska LTER site) This experimental dataset includes relative expression of individual Neocalanus flemingeri stage CV individuals incubated for different lengths of time and four different food treatments. The experimental protocol and results are described in detail in Roncalli et al., 2023. Briefly, field-collected N. flemingeri were allowed to molt into stage CV and then sorted into four different treatments: no food, low carbon, high carbon and high carbon with diatoms. After a one-week incubation, individuals from all four treatments were processed individually for RNA-Seq. In addition, following two and three-week incubations, copepods from the three fed treatments were processed individually for RNA-Seq. Short-sequence reads were mapped against a reference transcriptome and normalized gene expression was computed for each transcript. The dataset includes log-transformed relative gene expression in reads per kilobase per million reads (RPKM) (log2[RPKM+1]). The dataset also includes a list of differentially expressed genes and a look-up table that cross-references the hierarchical identifications of transcripts generated by the Trinity assembly software and the corresponding National Center for Biotechnology Information (NCBI) accession number. \n\nThese data are further described in the following publications: Roncalli, et al. (2023) (DOI: 10.1093/plankt/fbad045) and Roncalli, et al. (2019) (DOI: 10.1038/s42003-019-0565-5)\n\ncdm_data_type = Other\nVARIABLES:\nseq_id (unitless)\nGenbank_accession (unitless)\nOrganism_Name (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nDepth_range (meters (m))\n... (33 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_914459_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_914459_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_914459_v1/index.htmlTable https://www.bco-dmo.org/dataset/914459 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_914459_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_914459_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_914459_v1

 
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