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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782_v6 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782_v6.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3782_v6/ public [BATS discrete bottle data] - Discrete bottle samples collected at the Bermuda Atlantic Time-series Study (BATS) site in the Sargasso Sea from October 1988 through December 2023 (Bermuda Atlantic Time-series Study) Data presented here are discrete bottle samples from the Bermuda Atlantic Time-series Study (BATS) site located 80 km SE of Bermuda (31°40N, 64°10W) in the Sargasso Sea for October 1988 (cruise 10001) through December 2023 (cruise 10411). Measurements were collected from the core monthly BATS cruises and the near-biweekly (depending on ship availability) BATS Bloom cruises during February through April. The sample parameter list has been mostly consistent for the full time-series record and includes: salinity, dissolved oxygen, dissolved inorganic carbon, alkalinity, nutrients (nitrate + nitrite, nitrite, phosphate, silicate), particulate organics (carbon, nitrogen, phosphorous), particulate silicate, total organic carbon and nitrogen, total dissolved phosphorus, bacterial enumeration, and flow cytometry counts of picoplankton. The HPLC derived phytoplankton pigment data which are collected synoptically with many of the above parameters are reported in a separate dataset.\n\ncdm_data_type = Other\nVARIABLES:\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nBottle_ID (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nVessel (unitless)\nCruise_ID (unitless)\nCruise_type (unitless)\nCruise_num (unitless)\nCast_num (unitless)\nBottle_num (unitless)\nQF_bottle (unitless)\ndepth (m)\nQF1_Depth (unitless)\nTemp (degrees Celsius (°C))\nQF2_Temp (unitless)\nCTD_Salinity (dimensionless)\nQF3_CTD_Sal (unitless)\n... (53 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3782_v6_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3782_v6_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3782_v6/index.htmlTable https://www.bco-dmo.org/dataset/3782 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3782_v6.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3782_v6&showErrors=false&email= BCO-DMO bcodmo_dataset_3782_v6
log in [BATS discrete bottle data] - Discrete bottle samples collected at the Bermuda Atlantic Time-series Study (BATS) site in the Sargasso Sea from October 1988 through June 2024 (Bermuda Atlantic Time-series Study) Data presented here are discrete bottle samples from the Bermuda Atlantic Time-series Study (BATS) site located 80 km SE of Bermuda (31°40N, 64°10W) in the Sargasso Sea for October 1988 (cruise 10001) through June 2024 (cruise 10416). Measurements were collected from the core monthly BATS cruises and the near-biweekly (depending on ship availability) BATS Bloom cruises during February through April. The sample parameter list has been mostly consistent for the full time-series record and includes: salinity, dissolved oxygen, dissolved inorganic carbon, alkalinity, nutrients (nitrate + nitrite, nitrite, phosphate, silicate), particulate organics (carbon, nitrogen, phosphorous), particulate silicate, total organic carbon and nitrogen, total dissolved phosphorus, bacterial enumeration, and flow cytometry counts of picoplankton. The HPLC derived phytoplankton pigment data which are collected synoptically with many of the above parameters are reported in a separate dataset.\n\ncdm_data_type = Other\nVARIABLES:\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nBottle_ID (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nVessel (unitless)\nCruise_ID (unitless)\nCruise_type (unitless)\nCruise_num (unitless)\nCast_num (unitless)\nBottle_num (unitless)\nQF_bottle (unitless)\ndepth (m)\nQF_Depth (unitless)\nTemperature (degrees Celsius ( °C))\nQF_Temp (unitless)\nCTD_Salinity (dimensionless)\nQF_CTD_Sal (unitless)\n... (49 more variables)\n BCO-DMO bcodmo_dataset_3782_v7
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_942884_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_942884_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_942884_v1/ public [Biogeochemical Measurements from Surface Waters at the North Shore of Mo'orea, French Polynesia] - Biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia) in September 2017, May 2019, and April 2022 (Collaborative Research: Characterizing microbial transformation of marine DOM at the molecular level using untargeted metabolomic) This data includes biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia). Sampling took place in September 2017, May 2019, and April 2022. In 2019 and 2022, samples were also collected across three midday Lagrangian transect deployments, following water flowing linearly from ocean-facing forereefs over a reef crest to backreef lagoons. A variety of methods were used including colorimetric detection of inorganic nutrients, high-temperature combustion/oxidation, or chemical oxidation for the analysis of dissolved organic carbon (DOC) and particulate organic carbon and nitrogen (POC and PON) concentrations, isotope ratio mass spectrometry for determining stable carbon and nitrogen isotopes of particulate organic matter (POM), scanning excitation-emissions fluorescence measurements of whole seawater to quantify fluorescent dissolved organic matter (fDOM), flow cytometry-based cell counts to quantify bacterial abundance, and liquid chromatography coupled to tandem mass spectrometry to identify individual chemical features within marine DOM. These data help to quantify how biogeochemical parameters change in this region of the reef as open ocean waters flow onto the reef, over the reef, and then mix with waters in the bay. This work helps us to better identify external nutrients to the reef and how reef organisms modify and cycle carbon, nitrogen, and phosphorus over the reef. The results may be of use to physical, chemical, and biological oceanographers who study tropical reef systems and could inform other studies in the region including those conducted as part of the Mo'orea Coral Reef (MCR) Long Term Ecology Research (LTER) program. The samples were collected, measured (for a subset as noted below), and analyzed primarily by members of Lihini Aluwihare's group.\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nSampling_Strategy (unitless)\nMassiveID (unitless)\nMS_Sample_ID_1 (unitless)\nMS_Sample_ID_2 (unitless)\nYear (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\n... (41 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_942884_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_942884_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_942884_v1/index.htmlTable https://www.bco-dmo.org/dataset/942884 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_942884_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_942884_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_942884_v1
log in [BVAL bottle data (BATS Validation cruises)] - Discrete bottle samples collected during BATS Validation (BVAL) cruises from April 1991 through July 2024 (Bermuda Atlantic Time-series Study) Data presented here are discrete bottle samples for BATS validation (BVAL) cruise 50001 (April 1991) through BVAL cruise 50061 (June/July 2024). The sample parameter list has been mostly consistent for the full time-series record and includes: salinity, dissolved oxygen, dissolved inorganic carbon, alkalinity, nutrients (nitrate + nitrite, nitrite, phosphate, silicate), particulate organics (carbon, nitrogen, phosphorous), particulate silicate, total organic carbon and nitrogen, total dissolved phosphorus, bacterial enumeration, and flow cytometry counts of picoplankton.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nVessel (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCruise_type (unitless)\nCruise_num (unitless)\nCast_type (unitless)\nCast_num (unitless)\nBottle_num (unitless)\nQF_Niskin_GoFlo (unitless)\ndepth (m)\nQF1_Depth (unitless)\nTemp (degrees Celsius)\nQF2_Temp (unitless)\nCTD_Sal (PSS-78)\nQF3_CTD_Sal (unitless)\nSal1 (PSS-78)\nQF4_Sal1 (unitless)\nSigma_theta (kilogram per cubic meter (kg/m^3))\nQF5_Sigma_theta (unitless)\n... (45 more variables)\n BCO-DMO bcodmo_dataset_917255_v6
log in [BVAL bottle data (BATS Validation cruises)] - Discrete bottle samples collected during BATS Validation (BVAL) cruises from April 1991 through June 2023 (Bermuda Atlantic Time-series Study) Data presented here are discrete bottle samples for BATS validation (BVAL)  Cruise # 1 (April 1991) through BVAL cruise # 60 (June 2023). Following the first several years of the BATS project it was deemed necessary by the JGOFS steering committee and BATS PIs to conduct validation cruises in the vicinity of the nominal BATS site to better understand the mesoscale and larger scale variability of the region. In particular, a focus of the BVAL cruises was to assess the spatial scale representation of the BATS and Hydrostation ‘S' programs. Initial focus of the BVAL cruises was to investigate mesoscale variability and  meridional gradients of the local region. Later, cruises focused on specific mesoscale eddies (e.g., McGillicuddy et al., 1998; McGillicuddy et al., 1999) and effects of tropical cyclones through the local region. In the year 2000 it was deemed more important to document the larger scale changes in the North Atlantic Subtropical gyre so BVAL cruises established a transect line from ~ 35N to 19N (Bermuda to Puerto Rico) very similar to the WOCE A22 repeat hydrography line (Johnson et al., 2020). These annual Bermuda to Puerto Rico transects have been run since 2000 and target stations at every one degree of latitude and typically have been conducted in September/October of each year to capture maximal heat content in the upper ocean. However, since this timeframe coincides with high tropical cyclone activity the cruises were reluctantly (as of 2022) moved to begin in June/July of each year for safety and operational reasons. In the pentad prior to 2022 every BVAL cruise was significantly impacted by multiple tropical cyclones. Parameters presented are the same as provided in the standard BATS bottle files. To browse cruise tracks please see the supplemental information.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nVessel (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCruise_type (unitless)\nCruise_num (unitless)\nCast_type (unitless)\nCast_num (unitless)\n... (61 more variables)\n BCO-DMO bcodmo_dataset_917255_v5
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753431 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753431.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753431/ public [HHQ Flow Cytometry] - Flow cytometry measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway (Collaborative Research: Building a framework for the role of bacterial-derived chemical signals in mediating phytoplankton population dynamics) This dataset includes flow cytometry measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway. Microbial mesocosms were spiked with 2-heptyl-4-quinolone (HHQ).\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nSample (unitless)\nExperiment_num (unitless)\ntime2 (Time, hours)\nReplication (unitless)\nBacteria (cells/milliliter)\nSynechococcus (cells/milliliter)\nPicoeukaryotes (cells/milliliter)\nNanoeukaryotes (cells/milliliter)\nTotal_Phytoplankton_lt_15um (cells/milliliter)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753431/index.htmlTable https://www.bco-dmo.org/dataset/753431 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753431.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753431&showErrors=false&email= BCO-DMO bcodmo_dataset_753431
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783463 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783463.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783463/ public [Picoeukaryotic phytoplankton observations] - Picoeukaryotic phytoplankton observations from available public repositories and primary sources from from 1988-2007 (Convergence: RAISE: Linking the adaptive dynamics of plankton with emergent global ocean biogeochemistry) Picoeukaryotic phytoplankton observations from available public repositories and primary sources. Picoeukaryotic phytoplankton are defined as red fluorescent cells larger than Prochlorococcus and less than 2-3 \\u00b5m in cell diameter. We only considered cell counts by flow cytometry. Samples covered a latitudinal range from 71.4\\u02daN to 66.1\\u02daS up to 400 m depth. Ancillary temperature and nitrate records were available for all but 2,334 and 6,530 observations, respectively, which we complemented with 1\\u00b0 monthly depth-dependent averages from the World Ocean Atlas (www.nodc.noaa.gov). To avoid analytical issues with detection limits, we imposed a minimum nitrate concentration of 0.01 \\u03bcM. We calculated surface PAR (8 d averaged, 0.047\\u00b0 grid cell) using SeaWiFS and MODIS observations. Downward PAR was estimated using the attenuation coefficient K\\u2084\\u2089\\u2080 from SeaWiFS and MODIS (https://oceancolor.gsfc.nasa.gov) and corrected for chlorophyll a\\u00b3\\u2070, and a minimum of 10\\u207b\\u00b3 E/m\\u00b2d was imposed. Latitude, longitude, sample year, date and depth are provided with the field sample.\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\nday (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\npicoeukaryotes (cells per milliliter (cells/ml))\nTemperature (degrees C)\nPAR (Downwelling Photosynthetic Photon Radiance In Sea Water, Einstein per square meter per day (Einstein m-2 day-1))\nNO3 (Mole Concentration Of Nitrate In Sea Water, micromoles per liter (umol/L))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_783463_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783463/index.htmlTable https://www.bco-dmo.org/dataset/783463 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783463.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783463&showErrors=false&email= BCO-DMO bcodmo_dataset_783463
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783679.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783679 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783679.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783679/ public [Tidal study of seawater microbial communities] - Flow cytometry and nutrient analyses data from a tidal study over 48 hours of mangrove, seagrass, and seawater from the US Virgin Islands in July of 2017 (Signature exometabolomes of Caribbean corals and influences on reef picoplankton) Data from a tidal study over 48 hours of mangrove, seagrass, and seawater from the US Virgin Islands in 2017.  These data include tidal height, depth, temperature, salinity, Prochlorococcus counts, Synechococcus counts, Picoeukaryote abundances, nutrient concentrations at accession numbers for sequences at The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nNCBI_BioProject_accession_number (NCBI Bio Project Accession Number, unitless)\nNCBI_BioSample_accession_number (NCBI Bio Sample Accession Number, unitless)\nSample_type (unitless)\nSequencing_Strategy (unitless)\nSequencing_Instrument_model (unitless)\nSequencing_strategy (unitless)\nSite_Name (unitless)\nBiome (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_Date (unitless)\nCollection_Time (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nTide (unitless)\nTide_Height (Sea Surface Height, meters (m))\nTime_elapsed_between_tide_timepoint_and_collection (Sea Surface Height, minutes)\ndepth (Collection Depth, m)\nSite_Depth (meters (m))\nTemperature (degrees Celsius (ºC))\nSalinity (Sea Water Practical Salinity, Practical Salinity Units (PSU))\nProchlorococcus (cells per milliliter (cells/ml))\nSynechococcus (cells per milliliter (cells/ml))\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_783679_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783679/index.htmlTable https://www.bco-dmo.org/dataset/783679 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783679.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783679&showErrors=false&email= BCO-DMO bcodmo_dataset_783679

 
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