Accessing BCO-DMO data
Brought to you by BCO-DMO
|
|
BCO-DMO ERDDAP
Accessing BCO-DMO data |
log in
Brought to you by BCO-DMO |
| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log in | [18S rRNA Gene Amplicons from Swab and Tissue Specimens] - GenBank accessions for 18S rRNA gene amplicons from swab and tissue specimens collected in the Caribbean and Réunion (France) from May 2022 to Dec 2024 (Exploring the role of boundary layer microbial remineralization in flavivirus-host dynamics) | Investigating the cause of mass mortality of Diadema antillarum (urn:lsid:marinespecies.org:taxname:124332) identified the etiological agent as the Diadema antillarum Scuticociliatosis Philaster Clade (DaScPc). We sought to investigate the prevalence of this ciliate in sympatric reservoirs in the coral reef environment by targeted PCR using primers designed around this 18S rRNA sequence. We used swab sampling of corals, macroalgae, and other surfaces, as well as urchin tissues, followed by phylogenetic analyses, to identify the presence and diversity of this ciliate. We found that DaScPc could be found primarily in association with the coral Siderastrea siderea, and that changes in its prevalence could be explained by disease state of urchins, macroalgal density, and proximity to disease sites. This dataset contains the GenBank accession, sequencing, and collection metadata for the study.\n\ncdm_data_type = Other\nVARIABLES:\nGenbank_Accession (unitless)\nSequence_ID (unitless)\nSample_Location (unitless)\nSample_Type (unitless)\nSample_Month (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | BCO-DMO | bcodmo_dataset_985574_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922101_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922101_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922101_v1/ | public | [HRR 18S full-length sequence BLAST results] - Results of 18S sequencing of full-length 18S rDNA for metabarcoding samples collected during R/V Point Sur cruise PS18-09 in the Western Gulf of Mexico in September 2017 (RAPID: Hurricane Impact on Phytoplankton Community Dynamics and Metabolic Response) | This dataset includes results of 18S sequencing of full-length 18S rDNA for metabarcoding samples collected from surface depth at stations 06, 11, 16, 21, SS, and GI during R/V Pt. Sur cruise PS18-09 Leg 1 using Nanopore minION.\n\ncdm_data_type = Other\nVARIABLES:\nStation (unitless)\nLeg (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nSequence_ID (unitless)\nTaxonomy (unitless)\nSimilarity (percent)\nlength (base pairs (bp))\nmismatches (base pairs (bp))\ngaps (unitless)\nQ_start (base pairs (bp))\nQ_end (base pairs (bp))\nR_start (base pairs (bp))\nR_end (base pairs (bp))\ne_value (unitless)\nscore (unitless)\nfile_name_orig (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922101_v1/index.htmlTable | https://www.bco-dmo.org/dataset/922101
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922101_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922101_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_922101_v1 |