Accessing BCO-DMO data
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709787 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709787.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_709787/ | public | [5 generation increasing temperature experiment data] - Cyprinodon variegatus offspring growth rate from 5 generation increasing temperature experiments conducted on Atlantic wild caught specimens during 2014. (Beyond maternal effects: Transgenerational plasticity in thermal performance) | Cyprinodon variegatus offspring growth rate from 5 generation increasing temperature experiments conducted on Atlantic wild caught specimens during 2014.\n\ncdm_data_type = Other\nVARIABLES:\nGeneration (unitless)\nP_Temp (degree Celsius)\nF1_Temp (degree Celsius)\nF2_Temp (degree Celsius)\nF3_Temp (degree Celsius)\nF4_Temp (degree Celsius)\nF5_Temp (degree Celsius)\nT_Day (unitless)\nSex (unitless)\nWK2 (centimeters)\nGR_8WK (GR 8 WK, centimeters per week)\nAgeMaturation (Age Maturation, count)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_709787/index.htmlTable | https://www.bco-dmo.org/dataset/709787
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_709787.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_709787&showErrors=false&email= | BCO-DMO | bcodmo_dataset_709787 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_740014 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_740014.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_740014/ | public | [A. pisonii: behavior] - Proportion of time the mangrove tree crab Aratus pisonii spent in different behaviors related to diet and energy storage (Cannizzo et al, (2018) Ecol & Evol.) (Linking Variation in Metabolic Processes as a Key to Prediction) | This dataset includes behavioral observations of individual mangrove tree crabs, Aratus pisonii: the proportion of time spent sitting, moving, feeding, or not visible. Size and sex of the crabs, water temperature, and tidal period of the observations were also recorded. Crabs were collected near Fort Pierce, Florida from a dock area and released into one of three habitats: mangrove, saltmarsh or under the dock.\n\ncdm_data_type = Other\nVARIABLES:\nYear (unitless)\nID (unitless)\nHabitat (unitless)\nISO_Date (unitless)\nSite (unitless)\nCrab (unitless)\nCW (millimeters (mm))\nSex (unitless)\nTide (Sea Surface Height, unitless)\nTemp (Temperature, degrees Celsius)\ntotduration (minutes)\nSitting (unitless)\nMoving (unitless)\nFeeding (unitless)\nInvisible (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_740014/index.htmlTable | https://www.bco-dmo.org/dataset/740014
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_740014.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_740014&showErrors=false&email= | BCO-DMO | bcodmo_dataset_740014 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741114 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741114.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_741114/ | public | [A. pisonii: dissections] - Physiological parameters derived from dissection of mangrove crabs, A. pisonii, from three habitats along Florida's east coast in 2015 and 2016 (Linking Variation in Metabolic Processes as a Key to Prediction) | This dataset includes multiple physiological parameters derived from dissection of mangrove tree crabs, A. pisonii, from three habitats: mangrove, saltmarsh and mangrove.\n\ncdm_data_type = Other\nVARIABLES:\nHabitat (unitless)\nID (unitless)\nSite (unitless)\nYear (unitless)\nISO_Date (unitless)\nTide (Sea Surface Height, unitless)\nSex (unitless)\nGravid (unitless)\nCW (mm)\nGW (mm)\nGV (mm3)\nGW_CW (unitless)\nS_WB (grams)\nS_Dry (grams)\nS (grams)\nF_WB (grams)\nF_Dry (grams)\nF (grams)\nG_WB (grams)\nG_Dry (grams)\nG (grams)\nH_WB (grams)\nH_Dry (grams)\nH (grams)\nGT_WB (grams)\nGT_Dry (grams)\n... (7 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_741114/index.htmlTable | https://www.bco-dmo.org/dataset/741114
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_741114.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_741114&showErrors=false&email= | BCO-DMO | bcodmo_dataset_741114 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741032 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741032.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_741032/ | public | [A. pisonii: thermal picture] - Thermal condition of A. pisonii in three habitats: under dock, mangroves, saltmarsh (Linking Variation in Metabolic Processes as a Key to Prediction) | This dataset includes the crab body and air temperature readings from a\nmangrove, under a dock, and in a nearby salt marsh for a study of mangrove\ntree crabs, Aratus pisonii. Also reported are the proportion of time the crabs\nspent in the sun, relative solar exposure\\u00a0of each crab, and associated\nparameters.\n\ncdm_data_type = Other\nVARIABLES:\nHabitat (unitless)\nYear (unitless)\nID (unitless)\ntime (ISO Date, seconds since 1970-01-01T00:00:00Z)\nSite (unitless)\nCW (millimeters (mm))\nSex (unitless)\nProp_Water (unitless)\nAvg_Crab_Temp (degrees Celsius)\nTemp_Day (degrees Celsius)\nSun_Prop (unitless)\nTemp_Diff (degrees Celsius)\nSolar (W/m2)\ntime2 (Time, minutes)\nTime_S (seconds)\nSolar_Time (watts*seconds/square meter [(W*s)/m2])\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_741032/index.htmlTable | https://www.bco-dmo.org/dataset/741032
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_741032.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_741032&showErrors=false&email= | BCO-DMO | bcodmo_dataset_741032 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922718_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922718_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922718_v1/ | public | [Abyssal megafauna capture records] - Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 (Collaborative Research: Assessing the relative importance of small vs large particles as sources of nutrition to abyssal communities) | This dataset includes the capture records for the abyssal megafauna captured as part of this food web project. Megafauna were captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020. These animals were captured as representatives of their abyssal food webs for an isotopic investigation of their original particulate nutritional sources (different sized particles). Each organism was identified, measured, most weighed using a motion compensated scale, and frozen for later drying and isotope analysis. For larger organisms such as holothurians or fishes, samples of tissues were taken and often the whole animal was preserved for later confirmation of taxonomic identification.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_number (unitless)\nsample_code (unitless)\nSample (unitless)\nStation (unitless)\nStation_Latitude (degrees_north)\nlongitude (Station_longitude, degrees_east)\nlocal_date (unitless)\nType_of_organism (unitless)\nspecies (unitless)\nnumber (unitless)\nTotal_Length_cm (centimeters (cm))\nStandard_Length_cm (centimeters (cm))\nPreAnal_Fin_Length_cm (centimeters (cm))\nCarapace_Length_mm (millimeters (mm))\nMass_g (grams (g))\nsex (unitless)\nTissue_fin_clip (unitless)\nTissue_whole_body (unitless)\nTissue_white_muscle (unitless)\nTissue_gut_removed (unitless)\n... (9 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922718_v1/index.htmlTable | https://www.bco-dmo.org/dataset/922718
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922718_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922718_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_922718_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818482_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818482_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_818482_v1/ | public | [Acartia tonsa Body Size] - Sex-specific body size measurements from two copepod populations in the Coastal Northwest Atlantic Surface Waters from 2017-07-16 to 2017-08-25 (Collaborative Research: Response of marine copepods to warming temperature and ocean acidification) | Sex-specific body size measurements from two copepod populations in the Coastal Northwest Atlantic Surface Waters from 2017-07-16 to 2017-08-25\n\ncdm_data_type = Other\nVARIABLES:\nIndividual (unitless)\nPop (unitless)\nDev (degrees Celsius)\nSex (unitless)\nBL (millimeters)\nCollection_Date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_818482_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_818482_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_818482_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/818482
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_818482_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_818482_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_818482_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_955742_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_955742_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_955742_v1/ | public | [Acartia tonsa seasonal variation in body size] - Acartia tonsa prosome length measurements from copepods collected in Long Island Sound in summer and fall of 2019 (Linking eco-evolutionary dynamics of thermal adaptation and grazing in copepods from highly seasonal environments) | Copepods with short generation times experience seasonal environmental variation across, rather than within, generations. This data includes body size measurements for both male and female individuals from seasonal collections of Acartia tonsa from Eastern Long Island Sound in Summer and Fall 2019. The body size measurements in this dataset correspond to the 2019 collections (laboratory acclimation groups).\nAdditional body size measurements (as prosome lengths) were made on individuals from a split-brood experiment after several generations of common garden acclimation. The observed variation in size can therefore be attributed to the effects of both genetic variation and phenotypic plasticity. Data were collected by Dr. Matthew Sasaki at the University of Connecticut.\n\ncdm_data_type = Other\nVARIABLES:\ncollection_id (unitless)\ncollection_date (unitless)\ncollection_temp (degrees Celsius)\nacclimation_temp (degrees Celsius)\nsex (unitless)\nlength (millimeter (mm))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_955742_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/955742
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_955742_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_955742_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_955742_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818108_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818108_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_818108_v1/ | public | [Acartia tonsa thermal tolerance] - Sex-specific thermal stress survivorship measurements from two copepod populations in the Coastal Northwest Atlantic Surface Waters from 2017-07-16 to 2017-08-25 (Collaborative Research: Response of marine copepods to warming temperature and ocean acidification) | Sex-specific thermal stress survivorship measurements from two copepod populations in the Coastal Northwest Atlantic Surface Waters from 2017-07-16 to 2017-08-25\n\ncdm_data_type = Other\nVARIABLES:\nPop (unitless)\nDev (degrees Celsius)\nStress (degrees Celsius (degC))\nSex (unitless)\nSurv (unitless)\nCollection_Date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_818108_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_818108_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_818108_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/818108
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_818108_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_818108_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_818108_v1 | |||
| log in | [Adult black sea bass winter survival and lipid dynamics: Laboratory-mesocosm experiment] - Adult Black Sea Bass (Centropristis striata) winter survival and lipid accumulation under varying diet and temperature conditions from a laboratory mesocosm experiment (Oct 2022 to Apr 2023) with individuals collected in Long Island Sound (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) | This dataset contains measurements from a laboratory mesocosm experiment (Oct 2022 to Apr 2023) with adult Black Sea Bass (Centropristis striata) collected in Long Island Sound. Fish in this experiment were collected concurrently with fish sampled for a related wild-caught dataset (see 'Related Datasets' section).\n\nStudy description:\n\nWe experimentally examined overwintering potential of adult Black Sea Bass (Centropristis striata), an ecologically and economically important fish that seasonally migrates from offshore overwintering grounds to coastal feeding and nursery areas. We collected adults from Long Island Sound in September 2022 and reared them in a laboratory-mesocosm experiment under a contemporary seasonal temperature profile for Long Island Sound (LIS; October 2022 – April 2023) to assess their potential to survive and accumulate lipids throughout the winter. We also fed experimental adults two diet items (blue mussels and Atlantic herring), which are commonly found in Long Island Sound. \n\nIn addition, we sampled fish from the same reef in LIS at the start (October) and end (April) of the experiment to identify lipid dynamics in wild fish that migrate offshore (see \"Related Datasets\" section for wild fish data). Experimental C. striata growth throughout the winter was negligible with high mortality (> 50% observed). \n\nWhile survivors fed herring had higher tissue lipid contents, mortality was 2x higher than for fish fed mussels. In contrast, to the experimental fish, wild-captured fish in the spring had higher gonadosmatic indices than that for survivors across both diet treatments, which was most similar to fall-captured fish. While some fish survived throughout the winter, current winter bottom temperatures still preclude a year-round C. striata presence within Long Island Sound. Overwintering inshore is still disadvantageous compared to seasonally migrating due to surviving experimental fish having lower gonadosomatic indices, suggesting that the offshore overwintering period is a time to build energy reserves. However, as coastal waters continue to warm, changing conditions could lead populations to become year-round residents of Long Island Sound, thus increasing C. striata abundance.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\n... (44 more variables)\n | BCO-DMO | bcodmo_dataset_938004_v1 | ||||||||||||
| log in | [Adult black sea bass winter survival and lipid dynamics: Wild fish] - Adult Black Sea Bass (Centropristis striata) winter survival and lipid accumulation in wild-caught fish in Long Island Sound in Sept of 2022 to Apr of 2023 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) | This dataset contains adult Black Sea Bass (Centropristis striata) winter survival and lipid accumulation in wild-caught fish in Long Island Sound (September 2022 to April 2023). This dataset includes data from fish collected concurrently with those used in a related mesocosm experiment (run Oct 2022 to Apr 2023), with fish collected at the same reef (see 'Related Datasets' section).\n\nStudy description:\n\nWe experimentally examined overwintering potential of adult Black Sea Bass (Centropristis striata), an ecologically and economically important fish that seasonally migrates from offshore overwintering grounds to coastal feeding and nursery areas. We collected adults from Long Island Sound in September 2022 and reared them in a laboratory-mesocosm experiment under a contemporary seasonal temperature profile for Long Island Sound (LIS; October 2022 – April 2023) to assess their potential to survive and accumulate lipids throughout the winter. We also fed experimental adults two diet items (blue mussels and Atlantic herring), which are commonly found in Long Island Sound. \n\nIn addition, we sampled fish from the same reef in LIS at the start (October) and end (April) of the experiment to identify lipid dynamics in wild fish that migrate offshore. Experimental C. striata growth throughout the winter was negligible with high mortality (> 50% observed). \n\nWhile survivors fed herring had higher tissue lipid contents, mortality was 2x higher than for fish fed mussels. In contrast, to the experimental fish, wild-captured fish in the spring had higher gonadosmatic indices than that for survivors across both diet treatments, which was most similar to fall-captured fish. While some fish survived throughout the winter, current winter bottom temperatures still preclude a year-round C. striata presence within Long Island Sound. Overwintering inshore is still disadvantageous compared to seasonally migrating due to surviving experimental fish having lower gonadosomatic indices, suggesting that the offshore overwintering period is a time to build energy reserves. However, as coastal waters continue to warm, changing conditions could lead populations to become year-round residents of Long Island Sound, thus increasing C. striata abundance.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\n... (34 more variables)\n | BCO-DMO | bcodmo_dataset_938012_v1 | ||||||||||||
| log in | [Algal consumption data: Tegula with Cancer productus as the predator] - Algal consumption data from Tegula in the presence of the predator Cancer productus, displaying anti-predatory responses or not within mesocosms at Bodega Marine Lab in 2018 (Trophic consequences of ocean acidification: Intertidal sea star predators and their grazer prey) | To examine the impacts of fear removal on the strength of trophic cascades, we measured the amount of algae (Ulva spp.) consumed by Tegula funebralis that either displayed either an anti-predatory response to its predators, Pisaster ochraceus and Cancer productus, or ignored the predators. Additionally, we used two species of predators with differing consumption rates to test how predator traits might mediate the effect of removal on trophic cascade strength. The experiment was conducted within laboratory mesocosms at Bodega Marine Lab in 2018.\n\nThis dataset reports results for experiments with Cancer productus as the predator. See \"Related Datasets\" section for results from the experiments with Pisaster ochraceus as the predator.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nContainers (unitless)\nCrab (unitless)\nSize (millimeters (mm))\nSex (unitless)\nTable (unitless)\nInitial (grams (g))\nFinal (grams (g))\nFinal_shift (grams (g))\nAlgae_consumed (grams (g))\n | BCO-DMO | bcodmo_dataset_947753_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918010_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918010_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918010_v1/ | public | [Antillogorgia americana Monthly Surveys] - Number and size of gonads found in monthly samples of Antillogorgia americana colonies at a study site in the San Blas Islands, Panama from July 1990 to August 1991 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals) | The reproductive biology of the branching octocoral Antillogorgia americana was studied at a site on the Caribbean coast of Panama in 1990-1991. Eleven colonies were tagged and monthly samples were collected over a 14-month period. Colonies were gonochoric and the samples included 6 females and 4 females. Ten polyps were examined from each sample and the number and size of gonads were determined. An additional 4 branches were sampled from a female colony in January 1991 and fecundity was determined relative to the branch, position of branchlet on the branch, and position of the polyp on the branchlet. The lack of synchrony among colonies on the scale of months may reflect less need for all colonies to spawn in a single event among abundant species that release large numbers of gametes. Such a strategy also spreads the risk of reproductive failure due to environmental conditions during any single month. Multiple spawning episodes can also drive reproductive isolation of populations and may reflect the presence of cryptic species within the taxon. Studies of reproductive timing can be an important adjunct in identifying variation in life history strategies as well as assessing the validity of species boundaries. \n\nThis dataset includes the number and size of gonads found in monthly samples of each of 11 A. americana colonies.\n\ncdm_data_type = Other\nVARIABLES:\nSex (unitless)\nColony (unitless)\nMonth (unitless)\nYear (unitless)\nPolyp (unitless)\nNumber (unitless)\nAvg_diam (micrometers (um))\nVolume (cubic millimeters (mm^3))\nN_GE_400 (unitless)\nDiam1 (micrometers (um))\nDiam2 (micrometers (um))\nDiam3 (micrometers (um))\n... (4 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918010_v1/index.htmlTable | https://www.bco-dmo.org/dataset/918010
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918010_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918010_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_918010_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_854887_v1 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_854887_v1/ | public | [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) | Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids. Larvae were reared under two different temperatures to study temperature-dependent gene regulatory divergence between locally adapted Atlantic silverside populations in 2017. \n\nThe data are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with accession numbers SRR13523227- SRR13523268 associated with BioProject PRJNA694674 and BioSamples SAMN17531688 - SAMN17531729.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBioSample (unitless)\nSample_name (unitless)\nSRA (unitless)\ntaxonomy_id (unitless)\ntaxonomy_name (unitless)\necotype (unitless)\ndev_stage (unitless)\nsex (unitless)\ntissue (unitless)\nsample_type (unitless)\ncross (unitless)\ntreatment (degrees Celsius)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_854887_v1/index.htmlTable | https://www.bco-dmo.org/dataset/854887
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_854887_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_854887_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_854887_v1 | ||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3012.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3012 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3012.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3012/ | public | [bongo net zooplankton] - Zooplankton counts for bongo net hauls in the Gulf of Alaska from F/V Great Pacific GP0401-01, GP0401-02 from October to November 2004 (NEP project) (U.S. GLOBEC Northeast Pacific) | Zooplankton counts for bongo net hauls in the Gulf of Alaska from F/V Great Pacific GP0401-01, GP0401-02 from October to November 2004.\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid (unitless)\nhaul_id (N/A)\nstation (N/A)\nyrday_local (N/A)\nyear (N/A)\nmonth_local (N/A)\nday_local (N/A)\ntime_local_start (N/A)\nlatitude (degrees_north)\nlongitude (degrees_east)\nlat_end (Latitude, decimal degrees)\nlon_end (Longitude, decimal degrees)\ndepth (m)\nmesh_size (microns)\nvol_settled (milliliters)\ndisp_vol (milliliters)\ntaxon (N/A)\ncount_aliq (N/A)\naliquot (N/A)\ncount_total (N/A)\nsex (N/A)\ncomments_catch (N/A)\ncomments_tow (N/A)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3012_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3012/index.htmlTable | https://www.bco-dmo.org/dataset/3012
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3012.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3012&showErrors=false&email= | BCO-DMO | bcodmo_dataset_3012 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_675055 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_675055.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_675055/ | public | [Bulk Raw Isotopes - Tunas] - Bulk raw isotopic data from tissue samples from three species of tunas collected in the eastern tropical Pacific Ocean onboard commercial tuna purse-seine vessels from 2003-2005 (CAMEO 2009 - A novel tool for validating trophic position estimates in ecosystem-based fisheries models) | Bulk raw isotopic data from tissue samples from three species of tunas collected in the eastern tropical Pacific Ocean onboard commercial tuna purse-seine vessels.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nsample_number (unitless)\nset_number (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate (unitless)\nlength (millimeters (mm))\nsex (numeric (1 to 3))\nreplicate (unitless)\nd15N (D15 N, parts per thousand (per mil, ‰))\nd13C (D13 C, parts per thousand (per mil, ‰))\nMolar_C_to_N (dimensionless (ratio))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_675055_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_675055/index.htmlTable | https://www.bco-dmo.org/dataset/675055
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_675055.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_675055&showErrors=false&email= | BCO-DMO | bcodmo_dataset_675055 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709707 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709707.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_709707/ | public | [Compensatory growth and TGP] - Compensatory growth and TGP data from experiments conducted on juvenile Cyprinodon variegatus that were wild caught in the Atlantic during 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance) | Compensatory growth and TGP data from experiments conducted on juvenile Cyprinodon variegatus that were wild caught in the Atlantic during 2014.\n\ncdm_data_type = Other\nVARIABLES:\nGroup (unitless)\nPtemp (degrees Celsius)\nOtemp (Ocean Temperature, degrees Celsius)\nSex (unitless)\nMaturation (count)\nInitial_WK2 (millimeters)\nManipulation_WK10 (millimeters)\nCompensation_WK15 (millimeters)\nGSI (percent)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_709707/index.htmlTable | https://www.bco-dmo.org/dataset/709707
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_709707.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_709707&showErrors=false&email= | BCO-DMO | bcodmo_dataset_709707 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701726 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701726.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_701726/ | public | [Crab Tethering] - Tethering experiments on introduced crab conducted in several bays along the Central California coast in 2015 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator) | Tethering data for introduced crab for 2015. Experiments were conducted in several bays along Central California coast, shallow subtidal (<3 m depth).\n\ncdm_data_type = Other\nVARIABLES:\nbay (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate_collected (unitless)\nsize (millimeters (mm))\nsex (unitless)\noutcome (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_701726_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_701726/index.htmlTable | https://www.bco-dmo.org/dataset/701726
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_701726.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_701726&showErrors=false&email= | BCO-DMO | bcodmo_dataset_701726 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701751 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701751.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_701751/ | public | [Cross Bay Demographics] - Demographic data for introduced crab from multiple bays along the Central California coast in 2009-2016 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator) | Demographic data for introduced crab from multiple bays along the Central California coast, shallow subtidal (<3 m depth), in 2015.\n\ncdm_data_type = Other\nVARIABLES:\nbay (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate (unitless)\ntrap (unitless)\nspecies_code (unitless)\nspecies (unitless)\nsize (millimeters (mm))\nsex (unitless)\ngravid (unitless)\ninjury (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_701751_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_701751/index.htmlTable | https://www.bco-dmo.org/dataset/701751
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_701751.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_701751&showErrors=false&email= | BCO-DMO | bcodmo_dataset_701751 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907363_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907363_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907363_v1/ | public | [Ecological monitoring Natividad 2006-2021: Fish] - Ecological monitoring of fish on Isla Natividad from 2006 to 2021 (Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability) | This dataset encompasses information about fish transects between 2006 to 2021 in Isla Natividad. Abundances, sex and size of fish can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of the fish counted.\n\nEcological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nDAY (unitless)\nMONTH (unitless)\nYEAR (unitless)\nSTATE (unitless)\nCOMMUNITY (unitless)\nSITE (unitless)\nLAT (degrees_north)\nlongitude (Long, degrees_east)\nHABITAT (unitless)\nZONE (unitless)\nPROTECTION (unitless)\nMPA (unitless)\n... (15 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907363_v1/index.htmlTable | https://www.bco-dmo.org/dataset/907363
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907363_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907363_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_907363_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918546_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918546_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918546_v1/ | public | [Effect of phenotypic variation on dogwhelk morphology during eco-evolutionary field experiment] - Effect of phenotypic variation on dogwhelk morphology during an eco-evolutionary field experiment (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) | Although there is a growing body of work indicating that ecological and evolutionary processes can have reciprocal feedbacks on one another, few studies have tested these feedbacks in natural field settings at the community level. We tested the ecological consequences of selection on intra-population variation in dogwhelk drilling. We reared juvenile dogwhelks (Nucella canaliculata) on four early-life diet treatments (thin-shelled Mytilus trossulus, two treatments of M. californianus from two populations known to differ in adult shell thickness, and acorn barnacles) and then outplanted the dogwhelks to field cages to quantify the community effects of variation in drilling phenotype on mussel bed succession over a year. Changes in Nucella canaliculata morphology (change in length) were determined over the course of the experiment.\n\ncdm_data_type = Other\nVARIABLES:\nBlock (unitless)\nPlot_Number (unitless)\nPlot_Tidal_Height (meters (m))\nFamily (unitless)\nSite_Latitude (degrees_north)\nlongitude (Site_longitude, degrees_east)\nTreatment (unitless)\nFamily_x_Treatment (unitless)\nSnail_ID (unitless)\nSnail_Tag (unitless)\nSex (unitless)\nLength_initial (millimeters (mm))\nLength_final (millimeters (mm))\nLength_change (millimeters (mm))\nDead_vs_Replaced_vs_Never_found (unitless)\nDate_dead_or_replaced (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918546_v1/index.htmlTable | https://www.bco-dmo.org/dataset/918546
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918546_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918546_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_918546_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713206 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713206.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_713206/ | public | [Fish IDs and measurements] - Sex, length, and mass of adult M. beryllina collected in Suisun Bay, California from 2012-2013. (Impacts of size-selective mortality on sex-changing fishes) | Sex, length, and mass of adult M. beryllina collected in Suisun Bay, California from 2012-2013.\n\ncdm_data_type = Other\nVARIABLES:\nsex (unitless)\ntag (unitless)\nid (unitless)\nripe (unitless)\nnote (unitless)\nSL (millimeters)\nmass (grams)\ngonad_mass (grams)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_713206/index.htmlTable | https://www.bco-dmo.org/dataset/713206
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_713206.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_713206&showErrors=false&email= | BCO-DMO | bcodmo_dataset_713206 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709762 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709762.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_709762/ | public | [Grandparental effects] - Cyprinodon variegatus offspring growth rate in grandparental experiments from specimens wild caught in the Atlantic during 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance) | Cyprinodon variegatus offspring growth rate in grandparantal experiments from specimens wild caught in the Atlantic during 2014.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment (unitless)\nGGP_Temp (degress Celsius)\nGGP_T_Day (unitless)\ngptemp (degress Celsius)\nptemp (degress Celsius)\notemp (Ocean Temperature, degress Celsius)\nSex (unitless)\nAvg_ED (millimeters)\ngr (millimeters per day)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_709762/index.htmlTable | https://www.bco-dmo.org/dataset/709762
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_709762.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_709762&showErrors=false&email= | BCO-DMO | bcodmo_dataset_709762 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908689_v1/ | public | [Gulf of Alaska copepods: annotated transcriptomes] - Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) | The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads. The species are ecologically-important members of sub-arctic North Pacific marine zooplankton communities. The de novo assemblies included one generated several years ago plus eight new ones generated from six co-occurring species of calanoid copepods in the Gulf of Alaska. The transcriptomes include the first published ones for Neocalanus plumchrus, Neocalanus cristatus, Eucalanus bungii and Metridia pacifica and three for Neocalanus flemingeri and two for Calanus marshallae. Total RNA from single individuals was used to construct gene libraries that were sequenced on an Illumina Next-Seq platform. Short-sequence reads were assembled with Trinity software and resulting transcripts were annotated using the SwissProt database with additional functional annotation using gene ontology terms and enzyme function. The annotations files are the first ones published for these species. The integrated dataset can be used for quantitative inter- and intra-species comparisons of gene expression patterns across biological processes using the annotations.\n\nThese data are further described in the following publications: Hartline, et al. (2023) (DOI: 10.1038/s41597-023-02130-1), Roncalli, et al. (2022) (DOI: 10.1111/mec.16354), and Roncalli, et al. (2019) (DOI: 10.1038/s42003-019-0565-5)\n\ncdm_data_type = Other\nVARIABLES:\nseq_id (unitless)\nGenbank_accession (unitless)\nSpecies (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\nDepth_range (meters (m))\nLife_stage (unitless)\nSex (unitless)\nEntry (unitless)\n... (20 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_908689_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_908689_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908689_v1/index.htmlTable | https://www.bco-dmo.org/dataset/908689
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908689_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908689_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_908689_v1 | |||
| log in | [Integrated Energy Density data of Marine and Freshwater Organisms] - Marine and Freshwater Energy Density Data Integrated and Organized by Taxonomy from Previous Research Sources (1961 through June 2024) Discovered by a Literature Review (Nutritional ecology of climate change: Impacts on Northwest Atlantic fishes) | Energy is the currency of exchange within ecosystems which defines the strength and influence of interactions, particularly between predator and prey. The ability to estimate the productivity of an ecosystem is, therefore, dependent upon the estimation of consumer diet contents and their energetic quality. To estimate growth, reproduction, and, ultimately, survival of individuals, measures of prey quality for predators are essential both at the individual level and for scaling to ecosystem-wide fluxes and pools. Among measures of prey quality, energy density (kiloJoules per gram; kJ/g) is the most used in ecology. Considerable efforts have established estimates of energy densities for many aquatic taxa. However, a database of aquatic organism energetics constructed by integrating and organizing across multiple sources spawning marine and freshwater habitats across the globe is needed to add both depth (more samples to measure within-taxa variation) and breadth (more taxa). To generate a comprehensive energy density database of aquatic organisms, we performed a multifaceted review to find sources from the peer-reviewed and grey literature with a broad search on Web of Science, from citations of related literature, and a haphazard recommendation from experts. Estimates of energy density of whole organism live weights (kJ/g wet weight) were prioritized to better relate to diet and energetics studies. When energy density was only provided per gram dry weight, the dry weight and percentage water was used to calculate energy density per gram wet weight. Sub-organism (i.e. tissue specific) energy density estimates are included (e.g. muscle, liver, egg) when only these were reported. A total of 3810 records are included from 134 sources, covering 2016 unique taxa, of which 1771 (87.76%) are identified at the species level. Species or taxa-specific energy densities ranged from 0.015 to 17.949 kJ/g wet weight (WW) with a mean ± SD = 4.509 ± 1.94 kJ/g WW and median = 4.225 kJ/g WW. Among those phyla with more than three species (n phyla = 9), chordates (n taxa = 1283) had the highest average energy density (mean ± SD; 4.92 ± 1.90; 0.162 – 17.9 kJ/g WW) and ctenophores (n taxa = 4) had the lowest average (0.0988 ± 0.074; 0.03 to 0.205 kJ/g WW). Each record includes the organism taxonomy to the lowest resolution listed in the original source, energetic data available from the source including body composition and energy density data, number of replicates and methodology for measuring energetics information--primarily split between bomb calorimetry and proximate composition--as well as the source's author(s), year, and publication. Additional meta-data are included whenever possible based on details from the original source including the 1) environmental features: area, method, and timing of capture; 2) methodological features: storage method, storage duration, and tissue type measured; and 3) organismal features: weight, length, and sex; as well as any additional notes about the source. This comprehensive database integrates those data discoverable by our search and which met inclusion criteria identified above in a taxonomic and spatial organization framework to facilitate modeling trophic interactions, bioenergetics, growth, productivity, and energy fluxes through marine and freshwater ecosystems.\n\ncdm_data_type = Other\nVARIABLES:\nPhylum (unitless)\n... (41 more variables)\n | BCO-DMO | bcodmo_dataset_948253_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701840.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701840 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701840.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_701840/ | public | [Mark Recapture] - Mark recapture data for introduced crab in Seadrift Lagoon 2011-2018 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator) | Mark recapture data for introduced crab in Seadrift Lagoon (Central California coast, shallow subtidal (<3 m depth)) in 2015.\n\ncdm_data_type = Other\nVARIABLES:\nlagoon (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate (unitless)\nsite (unitless)\nsize (millimeters (mm))\nsex (unitless)\ngrav (unitless)\ninjury (unitless)\nrecap_mark (unitless)\nspecies_code (unitless)\nspecies (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_701840_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_701840/index.htmlTable | https://www.bco-dmo.org/dataset/701840
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_701840.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_701840&showErrors=false&email= | BCO-DMO | bcodmo_dataset_701840 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949666_v1 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949666_v1/ | public | [Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) | This project explores genomic changes in the invasive European green crab (Carcinus maenas), including at a putative inversion polymorphism. To begin to explore structural variation without a reference genome, we conducted semi-targeted longread sequencing of the C. maenas genome using MinION sequencing. This dataset includes individual metadata for 6 raw MinION reads, archived at GenBank's SRA under BioProject PRJNA1171011. This sequencing was conducted using crabs from Massachusetts waters.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nCollection_date (unitless)\nSRA_accession (unitless)\nbiosample_accession (unitless)\nembayment (unitless)\nstate (unitless)\nsex (unitless)\nlife_stage (unitless)\nrun_ID (unitless)\nsequencing_date (unitless)\nrun_day (days)\nprobe_set (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949666_v1/index.htmlTable | https://www.bco-dmo.org/dataset/949666
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949666_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949666_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_949666_v1 | ||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949682_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949682_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949682_v1/ | public | [Metadata for RNASeq of green crabs in the northeast Pacific] - Metadata for RNASeq of green crabs collected in the northeast Pacific from Apr 2017 to Aug 2021 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) | This project explores genomic changes in the invasive European green crab (Carcinus maenas) in the northeast Pacific. It tracks the earliest stages of green crab invasion into a new environment where the species is predicted to have substantial ecological and economic impacts. Samples span time and space across the species range in the northeast Pacific, with a focus on areas where the species is currently expanding. This dataset includes individual metadata for 127 raw RNA-Seq reads, archived at GenBank's SRA under BioProject PRJNA1170986.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nSRA_accession (unitless)\nbiosample_accession (unitless)\nembayment (unitless)\nsite (unitless)\nstate (unitless)\nsex (unitless)\nsize_CW (Millimeters (mm))\ncolor (unitless)\ncollection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncollector (unitless)\ncollector_affiliation (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_949682_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_949682_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949682_v1/index.htmlTable | https://www.bco-dmo.org/dataset/949682
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949682_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949682_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_949682_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949610_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949610_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949610_v1/ | public | [Metadata for targeted genotyping of green crabs in the northeast Pacific] - Metadata for targeted genotyping of green crabs collected in the northeast Pacific from Aug 2016 to Oct 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) | This project explores genetic changes in the invasive European green crab (Carcinus maenas) in the northeast Pacific, using targeted genotyping of SNPs identified in prior high-resolution population genomics in the region. It tracks the early stages of green crab invasion into a new environment, particularly through repeated sampling of multiple size-classes of crabs from the same sites over multiple years. Samples span time and space across the species range in the northeast Pacific, with a focus on the coast of Washington and Oregon. This dataset includes individual collection and accession metadata for 1,662 crabs, for which raw demultiplexed reads are archived at GenBank's SRA under BioProject PRJNA1177418.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nSRA_accession (unitless)\nbiosample_accession (unitless)\nembayment (unitless)\nsite (unitless)\nstate (unitless)\nsex (unitless)\nsize_CW (Millimeters (mm))\ncolor (unitless)\ncollection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncollector (unitless)\ncollector_affiliation (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_949610_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_949610_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949610_v1/index.htmlTable | https://www.bco-dmo.org/dataset/949610
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949610_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949610_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_949610_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701863.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701863 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_701863.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_701863/ | public | [Monthly Trapping] - Demographic data from introduced crab in Seadrift Lagoon 2009-2019 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator) | Demographic data from introduced crab in Seadrift Lagoon (Central California coast, shallow subtidal (<3 m depth)) in 2015.\n\ncdm_data_type = Other\nVARIABLES:\nlagoon (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate (unitless)\nsite (unitless)\nsize (millimeters (mm))\nsex (unitless)\ngravid (unitless)\ninjury (unitless)\nrecap_mark (unitless)\nspecies_code (unitless)\nspecies (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_701863_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_701863/index.htmlTable | https://www.bco-dmo.org/dataset/701863
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_701863.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_701863&showErrors=false&email= | BCO-DMO | bcodmo_dataset_701863 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922330_v1/ | public | [Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) | High-throughput sequencing study of field-collected Neocalanus flemingeri pre-adults (stage CV) and adult females between 2015 and 2022. Dataset includes information and accession numbers of the raw sequence reads. Zooplankton collections were made in the northern Gulf of Alaska in collaboration with the Seward Long-term Monitoring Program and the northern Gulf of Alaska Long-term Ecological Research Program (LTER). Pre-adults were collected during the spring from multiple stations, sorted from net collections and immediately preserved. Adult females were collected mostly from Prince William Sound, but also on one occasion from the Gulf of Alaska. Adult females were collected from depth during diapause and preserved upon net retrieval. In addition, time series data were generated in three different years to characterize the post-diapause period through the spawning phase. The purpose of the data collection is to generate gene expression profiles during different years and seasons to evaluate developmental stage and physiological state.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDepth_Range (meters (m))\nDate (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nLife_Stage (unitless)\nSex (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSample_Accession (unitless)\nSRA_Run_Accession (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922330_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922330_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922330_v1/index.htmlTable | https://www.bco-dmo.org/dataset/922330
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922330_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922330_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_922330_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920883_v1 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_920883_v1/ | public | [Nematostella ocean acidification experiment: Adult respiration] - Adult respiration after spawning following parental ocean acidification during lab experiments conducted in spring 2022. (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress) | Ocean acidification (OA) resulting from anthropogenic CO2 emissions is impairing the reproduction of marine organisms. While parental exposure to OA can protect offspring via carryover effects, this phenomenon is poorly understood in many marine invertebrate taxa. We examined how parental exposure to acidified (pH 7.40) versus ambient (pH 7.72) seawater influenced reproduction and offspring performance across six gametogenic cycles (13 weeks) in the estuarine sea anemone Nematostella vectensis. This dataset pertains to the reproductive physiology of adult organisms from this study: adult respiration.\n\ncdm_data_type = Other\nVARIABLES:\nTreatment (unitless)\nSex (unitless)\nRespiration_Rate (nmol/min)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_920883_v1/index.htmlTable | https://www.bco-dmo.org/dataset/920883
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_920883_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_920883_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_920883_v1 | ||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907880_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907880_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907880_v1/ | public | [Neocalanus flemingeri lipid fullness] - Post-diapause Neocalanus flemingeri females morphometric measurements and calculations of lipid fullness and lipid volume taken from the R/V Sikuliaq and the R/V Tiglax in the Northern Gulf of Alaska from 2019-06-30 to 2019-09-13 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) | Morphometric data on Neocalanus flemingeri females were made on individuals collected in diapause in June and September, 2019 and after incubation in the laboratory for up to 4.5 weeks. Collections were made from depth in Prince William Sound in the Gulf of Alaska during two NGA LTER cruises. After sorting, females were incubated in flasks at 4-6ºC for up to 4.5 weeks. Individuals were removed for imaging and experimental incubations to study oocyte production. Morphometric analysis was used to measure prosome length and area as well as lipid sac area for lipid fullness and lipid volume calculations. Lipid consumption during diapause was minimal and modest initially.\n\ncdm_data_type = Other\nVARIABLES:\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate_collected (unitless)\nCollection_month (unitless)\nSpecies (unitless)\nSex (unitless)\nEdU_sample_ID_number (unitless)\nUsed_in_EdU_experiments (unitless)\nLength_of_EdU_incubation_in_hours (hours)\nImage_number_light_microscope (unitless)\nDate_image_was_taken (unitless)\nTime_point (hours or weeks)\nTime_point_in_days (days)\nProsome_length (millimeters (mm))\nProsome_area (square millimeters (mm^2))\nLipid_area (square millimeters (mm^2))\nLipid_volume (milligrams (mg))\nLipid_fullness_percentage (percent (%))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_907880_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_907880_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907880_v1/index.htmlTable | https://www.bco-dmo.org/dataset/907880
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907880_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907880_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_907880_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908514_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908514_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908514_v1/ | public | [Neocalanus flemingeri oocyte production] - Oocytes formation in post-diapause Neocalanus flemingeri females from the R/V Sikuliaq and the R/V Tiglax in the Northern Gulf of Alaska from 2019-06-30 to 2019-09-13 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) | These data are from a study on the formation of oocytes in post-diapause Neocalanus flemingeri females collected from depth in Prince William Sound in the Gulf of Alaska. Collections were made during two NGA LTER cruises. After sorting, females were incubated in flasks and removed for experimental incubations and imaging. Oocyte production by post-diapause females that involved DNA replication in the ovary and oviducts was examined using incubation in 5-Ethynyl-2'-deoxyuridine (EdU). Both oogonia and oocytes incorporated EdU, with the number of EdU labeled cells peaking at 72 hours following diapause termination. Cells labeling with EdU remained high for two weeks, decreasing thereafter with no labeling detected by four weeks post diapause, and three to four weeks before spawning of the first clutch of eggs. By limiting DNA replication to the initial phase, the females effectively separate oocyte production from oocyte provisioning.\n\ncdm_data_type = Other\nVARIABLES:\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate_collected (unitless)\nCollection_month (unitless)\nSpecies (unitless)\nSex (unitless)\nEdU_sample_ID_number (unitless)\nAmount_of_EdU (milligrams (mg))\nIncubation_date_at_start (unitless)\nLength_of_EdU_incubation_in_hours (hours)\nTime_point_in_days (days)\nNumber_of_cells_replicating (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_908514_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_908514_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908514_v1/index.htmlTable | https://www.bco-dmo.org/dataset/908514
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908514_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908514_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_908514_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908739_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908739_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908739_v1/ | public | [Nucella canaliculata Morphology and Drill Hole Data] - Nucella canaliculata morphology and drill hole data from experiments conducted at Bodega Marine Laboratory from 2020 to 2021 (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) | Most predator-prey interactions typically occur over large biogeographic areas with varying abiotic and biotic conditions. If these environmental or biotic gradients are consistent over time they can impose spatially varying selection pressures on the co-evolving predator or prey. Nucella canaliculata is a predatory dogwhelk that inhabits rocky shore ecosystems along the West Coast of North America and preys on multiple barnacle and mussel species by drilling a hole through the shell of their prey. Previous work has documented geographic variation in the ability of N. canaliculata to drill the foundation species, Mytilus californianus. However, the underlying mechanisms and scale of these phenotypic differences haven't been determined. We hatched and raised N. canaliculata from 6 populations, 3 in California and 3 in Oregon, for a year in the laboratory on a common diet of Mytilus trossulus. We then challenged these dogwhelks with a series of M. californianus mussels of increasing size and thickness to identify the largest and thickest mussel drilled for each dogwhelk. There were clear geographic differences in drilling capacity. Dogwhelks from California were able to drill mussels that were substantially larger and thicker than those from Oregon. We are exploring whether selection on drilling capacity is associated with a coastal mosaic of mussel shell thickness and if these differences can influence the dynamics of rocky intertidal ecosystems.\n\ncdm_data_type = Other\nVARIABLES:\nContainer (unitless)\nSite (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nFamily (unitless)\nDogwhelk (unitless)\nSex (unitless)\nLength_Initial (millimeters (mm))\nLength_Final (millimeters (mm))\nLength_change (millimeters (mm))\nCheck (unitless)\nDate (unitless)\n... (4 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908739_v1/index.htmlTable | https://www.bco-dmo.org/dataset/908739
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908739_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908739_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_908739_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_923960_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_923960_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_923960_v1/ | public | [Ocean warming & acidification experiment: Acartia hudsonica population fitness] - Population fitness measurements collected for Acartia hudsonica during multigenerational exposure to ocean warming (OW), ocean acidification (OA), and combined ocean warming and acidification (OWA) (Collaborative Research: Response of marine copepods to warming temperature and ocean acidification) | These data include population fitness measurements collected for Acartia hudsonica during multigenerational exposure to ocean warming (OW), ocean acidification (OA), and combined ocean warming and acidification (OWA) including a benign ambient condition temperature and CO2 control (AM).\n\ncdm_data_type = Other\nVARIABLES:\nGeneration (unitless)\nTreatment (unitless)\nRep (unitless)\nlambda (per generation)\nsurv (unitless)\nepr (eggs per female per day)\nhf (nauplii per number of eggs laid)\nsex (females per total copepods)\ndev_time (days to adulthood)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_923960_v1/index.htmlTable | https://www.bco-dmo.org/dataset/923960
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_923960_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_923960_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_923960_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_923908_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_923908_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_923908_v1/ | public | [Ocean warming & acidification experiment: Acartia tonsa population fitness] - Population fitness measurements collected for Acartia tonsa during multigenerational exposure to ocean warming (OW), ocean acidification (OA), and combined ocean warming and acidification (OWA) (Collaborative Research: Response of marine copepods to warming temperature and ocean acidification) | These data include population fitness measurements collected for Acartia tonsa during multigenerational exposure to ocean warming (OW), ocean acidification (OA), and combined ocean warming and acidification (OWA) including a benign ambient condition temperature and CO2 control (AM). These data were estimated as the population net reproductive rate collected every third generation between F0 and F15 and at F25 for all treatments. These data were estimated via age-structured leslie matrices using the existing survival, fecundity (egg production and hatching success), development time, and sex ratio data for this experiment.\n\ncdm_data_type = Other\nVARIABLES:\nGeneration (unitless)\nTreatment (unitless)\nRep (unitless)\nlambda (per generation)\nsurv (unitless)\nepr (eggs per female per day)\nhf (nauplii per number of eggs laid)\nsex (females per total copepods)\ndev_time (days to adulthood)\nlambda_stand (unitless)\nsurv_stand (unitless)\nepr_stand (unitless)\nhf_stand (unitless)\nsex_stand (unitless)\ndev_stand (unitless)\nlambda_rel (unitless)\nsurv_rel (unitless)\nepr_rel (unitless)\nhf_rel (unitless)\nsex_rel (unitless)\ndev_rel (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_923908_v1/index.htmlTable | https://www.bco-dmo.org/dataset/923908
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_923908_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_923908_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_923908_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_955729_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_955729_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_955729_v1/ | public | [Ontogenetic patterns in respiration rate in Acartia tonsa] - Individual respiration rate measurements for developmental stages of Acartia tonsa during temperature experiments with copepods collected from eastern Long Island Sound in July of 2021 (Linking eco-evolutionary dynamics of thermal adaptation and grazing in copepods from highly seasonal environments) | The data contain individual respiration rate measurements for developmental stages of Acartia tonsa, collected from eastern Long Island Sound in July 2021. Individuals were exposed to either ambient or increased temperature as nauplii, and then tracked through development. At each developmental stage, respiration rate was measured for the individual using a PreSens respirometer. High resolution data on individual respiration rates through development are crucial for understanding how climate change may impact ecological and biogeochemical dynamics in aquatic systems. Data were collected by Mathew Holmes-Hackerd and Dr. Matthew Sasaki at the University of Connecticut.\n\ncdm_data_type = Other\nVARIABLES:\nexperiment_date (unitless)\nexperiment_day (unitless)\nexperiment_month (unitless)\nexperiment_year (unitless)\nreplicate (unitless)\nindividual (unitless)\nstage (unitless)\nvial (unitless)\nresp_rate (milligrams Oxygen consumed per hour (mg O2/hr))\nprosome_length (millimeters (mm))\ntreatment (unitless)\ngroup (unitless)\nsex (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_955729_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/955729
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_955729_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_955729_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_955729_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782247.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782247 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782247.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782247/ | public | [Otolith microstructure] - Otolith microstructure of young-of-year Atlantic silversides (Menidia menidia) from Mumford Cove during 2015 (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish) | Back-calculated age, hatch date, length-at-age, growth rate, and experienced temperature of young-of-year Atlantic silversides (Menidia menidia) collected during 3 successive collections in Mumford Cove, CT in fall 2015.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nCollection_Date (unitless)\nIndividual_number (unitless)\nTotal_length (centimeters (cm))\nTotal_length_class (centimeters (cm))\nTotal_length_group (unitless)\nSex (unitless)\nAge (days post hatch)\nHatch_Date (unitless)\nBiweekly_hatch_interval (unitless)\nHatch_check_radius (micrometer (um))\nOtolith_size (micrometer (um))\nHatch_check_flag (unitless)\nOtolith_flag (unitless)\nScaling_factor (unitless)\nIncrement_formation_date (unitless)\nTemperature (degrees Celsius)\nIncrement (Number)\nIncrement_width (micrometer (um))\nLength_at_age (millimeter (mm))\nGrowth_rate (millimeter per day (mm/d))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782247/index.htmlTable | https://www.bco-dmo.org/dataset/782247
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782247.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782247&showErrors=false&email= | BCO-DMO | bcodmo_dataset_782247 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709815 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_709815.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_709815/ | public | [Parental contribution] - Cyprinodon variegatus offspring growth rate from parental contribution experiments conducted on wild caught Atlantic specimens during 2014. (Beyond maternal effects: Transgenerational plasticity in thermal performance) | Cyprinodon variegatus offspring growth rate from parental contribution experiments conducted on wild caught Atlantic specimens during 2014.\n\ncdm_data_type = Other\nVARIABLES:\nMomID (Mom ID, unitless)\nDadID (Dad ID, unitless)\nMomL (Mom L, millimeters)\nDadL (Dad L, millimeters)\nMomT (Mom T, degrees Celsius)\nDadT (Dad T, degrees Celsius)\nOffspringT (Offspring T, degrees Celsius)\nSex (unitless)\nGR (millimeter per day)\nWK2 (millimeters)\nMass (gram)\nGonad (gram)\nGSI (percent)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_709815/index.htmlTable | https://www.bco-dmo.org/dataset/709815
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_709815.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_709815&showErrors=false&email= | BCO-DMO | bcodmo_dataset_709815 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3106 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3106.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3106/ | public | [salmon_biodata] - Salmon length, weight, sex, stomach data from F/V Great Pacific, R/V Miller Freeman multiple cruises in the Coastal Gulf of Alaska, NE Pacific from 2001-2004 (NEP project) (U.S. GLOBEC Northeast Pacific) | Salmon length, weight, sex, stomach data from F/V Great Pacific, R/V Miller Freeman multiple cruises in the Coastal Gulf of Alaska, NE Pacific from 2001-2004.\n\ncdm_data_type = Other\nVARIABLES:\nyear (dimensionless)\ntransect (dimensionless)\nsta_id (dimensionless)\nhaul_id (dimensionless)\nmonth_local (dimensionless)\nday_local (dimensionless)\nyrday_local (dimensionless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_w (Depth, meters)\nspecies_common_name (dimensionless)\nlength_froz (?)\nlength_wet (?)\nweight_froz (grams)\nweight_wet (grams)\nsex (dimensionless)\nmaturity (dimensionless)\nstomwt_full (grams)\nstomwt_empty (?)\nsealice (dimensionless)\ncomments (dimensionless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3106_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3106/index.htmlTable | https://www.bco-dmo.org/dataset/3106
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3106.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3106&showErrors=false&email= | BCO-DMO | bcodmo_dataset_3106 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3030 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3030.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3030/ | public | [salmon_juv_diet] - Juvenile salmon diet from F/V Great Pacific, R/V Miller Freeman GP0108, GP0207-01, MF0310 in the Coastal Gulf of Alaska, Northeast Pacific from 2001-2003 (NEP project) (U.S. GLOBEC Northeast Pacific) | Juvenile salmon diet from F/V Great Pacific, R/V Miller Freeman GP0108, GP0207-01, MF0310 in the Coastal Gulf of Alaska, Northeast Pacific from 2001-2003.\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\ncruiseid (unitless)\nhaul_id (unitless)\nsta_id (unitless)\nmonth_local (unitless)\nday_local (unitless)\ntime_start_local (HHMM)\nyrday_local (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndistance_start (nautical miles)\ndepth (m)\ntemp_start (degrees Celsius)\ntime_end_local (HHMM)\nlat_end (Latitude, decimal degrees)\nlon_end (Longitude, decimal degrees)\ndistance_end (unitless)\ndepth_end (Depth, meters)\ntemp_end (degrees Celsius)\nhabitat (unitless)\ncontrol_id (unitless)\nweight_wet (grams)\nsex (M or F)\nname_common (unitless)\nspecies (Genus and Species)\npred_stom_wgt (grams)\n... (8 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3030_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3030/index.htmlTable | https://www.bco-dmo.org/dataset/3030
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3030.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3030&showErrors=false&email= | BCO-DMO | bcodmo_dataset_3030 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3794.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3794 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3794.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3794/ | public | [seal_ID_info] - Physical data (sex, weight, tag ID number) from Harbor Seals tagged in the San Juan Islands, 2007-2008 (Responses of Seals and Sea Lions to Increased Rockfish Density) | Physical and identifying info for Harbor Seals tagged and tracked in the San Juan Islands from 2007 to 2008; includes sex, length, weight, pelage description, and tag ID numbers.\n\ncdm_data_type = Other\nVARIABLES:\nseal_id (unitless)\nseason (text)\ndate (unitless)\nmonth (unitless)\nday (unitless)\nyear (unitless)\nregion (text)\nsite (text)\nage (text)\nsex (M or F)\nlength (cm)\nweight (kg)\npelage (text)\npregnant (Y / N)\nlactating (Y / N)\nmolt (Y / N)\nblood (Y / N)\nbiopsy (Y / N)\ninst (unitless)\nserial_num (unitless)\ninst2 (unitless)\nserial_num2 (unitless)\npttno (unitless)\ninst3 (unitless)\nserial_num3 (unitless)\ncomment (text)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3794/index.htmlTable | https://www.bco-dmo.org/dataset/3794
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3794.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3794&showErrors=false&email= | BCO-DMO | bcodmo_dataset_3794 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3010 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3010.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3010/ | public | [tucker catch - CGoA LTOP] - Zooplankton catch data from Tucker trawls from CGOA LTOP cruises from the Coastal Gulf of Alaska, Northeast Pacific, 2001-2003 (NEP project) (U.S. GLOBEC Northeast Pacific) | Zooplankton catch data from Tucker trawls from CGOA LTOP cruises from the Coastal Gulf of Alaska, Northeast Pacific, 2001-2003.\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\nhaul_id (unitless)\nyrday_local (dimensionless)\nmonth_local (unitless)\nday_local (unitless)\ntime_local_start (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nlat_end (Latitude, decimal degrees)\nlon_end (Longitude, decimal degrees)\nstation (text)\ndepth (m)\nduration (seconds)\nhabitat (text)\nvol_settled (milliliters)\ndisp_vol (milliliters)\ntaxon (text)\ncruiseid (unitless)\nsex (text)\ncount_aliq (dimensionless)\naliquot (dimensionless)\ncount_total (dimensionless)\ncomments_catch (text)\ncomments_tow (text)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3010_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3010/index.htmlTable | https://www.bco-dmo.org/dataset/3010
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3010.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3010&showErrors=false&email= | BCO-DMO | bcodmo_dataset_3010 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2987 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2987/ | public | [whales historical id's] - Confirmed right whale identifications in Cape Cod Bay and adjacent waters and sighting histories, from the R/V Shearwater NEC-MB2002-1 (1998-2002), and historical records from 1980 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research) | Confirmed right whale identifications in Cape Cod Bay and adjacent waters and sighting histories, from the R/V Shearwater NEC-MB2002-1 (1998-2002), and historical records from 1980 (Northeast Consortium Cooperative Research project).\n\ncdm_data_type = Other\nVARIABLES:\nyear\nwhale_id\nsex\nregion\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2987/index.htmlTable | https://www.bco-dmo.org/dataset/2987
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2987.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2987&showErrors=false&email= | BCO-DMO | bcodmo_dataset_2987 | ||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2990.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2990 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2990.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2990/ | public | [whales_id's_2002] - Confirmed right whale identifications in Cape Cod Bay and adjacent waters from the R/V Shearwater NEC-MB2002-1, 2002 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research) | Confirmed right whale identifications in Cape Cod Bay and adjacent waters from the R/V Shearwater NEC-MB2002-1, 2002 (Northeast Consortium Cooperative Research project).\n\ncdm_data_type = Other\nVARIABLES:\nregion\nwhale_id\nsex (dimensionless)\nage (years)\nyrday_local\nyear\nmonth_local\nday_local\nsighting\ncomments\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2990/index.htmlTable | https://www.bco-dmo.org/dataset/2990
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2990.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2990&showErrors=false&email= | BCO-DMO | bcodmo_dataset_2990 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2332 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2332.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2332/ | public | [zoo_pump] - Zooplankton counts (density) from R/V Seward Johnson, R/V Oceanus, and R/V Edwin Link cruises SJ9508, OC303, EL9904, and EL9905 in the Gulf of Maine and Georges Bank from 1995-1999 (GB project) (U.S. GLOBEC Georges Bank) | Zooplankton counts (density) from R/V Seward Johnson, R/V Oceanus, and R/V Edwin Link cruises SJ9508, OC303, EL9904, and EL9905 in the Gulf of Maine and Georges Bank from 1995-1999\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid\nyear (GMT)\nevent\nyrday_gmt (decimalday,GMT)\nmonth_gmt (GMT)\nday_gmt (GMT)\ntime_gmt (GMT)\nstation\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\ntaxon\nstage\nstage_num\nsex\nnum_per_m3 (number per cubic meter)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_2332_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2332/index.htmlTable | https://www.bco-dmo.org/dataset/2332
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2332.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2332&showErrors=false&email= | BCO-DMO | bcodmo_dataset_2332 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926368_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926368_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_926368_v1/ | public | [Zooplankton Acidification Lab Results] - Results from Calanus pacificus Acidification Laboratory Experiments from 2019-2020 (Zooplankton Swimming project) (Causes and consequences of hypoxia and pH impacts on zooplankton: Linking movement behavior to vertical distribution.) | We conducted laboratory experiments using stratified 1 m x 0.1 × 0.1 acrylic water columns to measure the effects of bottom water hypoxia and low pH on mortality, distribution, and swimming behaviors of the calanoid copepod Calanus pacificus. Calanus pacificus were collected from within Puget Sound, Washington, USA, between June and October of 2019 and 2020. Their behaviors and vertical distributions in response to either hypoxic or acidified bottom waters were observed in an array of 4 replicate columns. Swimming behavior was observed for 90 minutes using 5-megapixel IR USB cameras. Two front-facing cameras (‘bottom camera', ‘surface camera') recorded swimming in the X (left, right) and Z (up, down) directions. An upwards-facing ‘base camera' was added to each tank in 2020 to improve tracking and behavioral analysis of copepods near the bottom. Base cameras recorded the bottom 2 cm of each tank in the X and Y (front, back) directions. \n\nThe primary data file of this dataset contains collection and organism details for copepods used in acidification experiments (926368_v1_zooplankton_acidification_pH_experiment_overview.csv). This dataset also includes four Supplemental Files .csv files summarizing results from our acidification experiments (926368_v1_zooplankton_acidification_pH_chemistry.csv, 926368_v1_zooplankton_acidification_pH_moribundity.csv, 926368_v1_zooplankton_acidification_pH_mean_height.csv, 926368_v1_zooplankton_acidification_pH_speed.csv).\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Date (unitless)\nCollection_Date (unitless)\nSort_Date (unitless)\nCollector (unitless)\nCollection_Site (unitless)\nLifestage (unitless)\nSex (unitless)\nCollection_Lat (degrees_north)\nlongitude (Collection_long, degrees_east)\nExperiment_Type (unitless)\nCollection_Notes (unitless)\nExperiment_Notes (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_926368_v1/index.htmlTable | https://www.bco-dmo.org/dataset/926368
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_926368_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_926368_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_926368_v1 |