Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986882_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986882_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_986882_v1/ | public | [Hydrothermal vent microbial and viral metagenomes] - Metagenome sequences from deep-sea hydrothermal vent microbial and viral communities collected at International District hydrothermal field, Axial Seamount during 2019, 2021, 2022, and 2023 (CAREER: Temporal dynamics of microbial and viral function and adaptation in hydrothermal vents) | These data include metagenomes of both viruses and microbes collected during the Ocean Observatories Initiative's Regional Cabled Array (OOI RCA) annual maintenance cruises. Cruises occurred in 2019, 2021, 2022, and 2023. Instruments used included the Particle and Phytoplankton (PPS) DNA sampler deployed at Tiny Towers hydrothermal vent in the International District, as well as the Universal Fluid Obtainer (UFO) fluid sampler mounted aboard ROV Jason. These data assess changes in the microbial and viral community over time at Tiny Towers and at nearby hydrothermal vents, and were collected and processed by Dr. Rika Anderson at Carleton College.\n\ncdm_data_type = Other\nVARIABLES:\nAccession (unitless)\nSample_Name (unitless)\nSPUID (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nBioProject (unitless)\nsample_name (unitless)\ncollection_date (unitless)\ncollection_time (unitless)\ndepth (m)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncollection_method (unitless)\ntemp (degrees Celsius)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_986882_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_986882_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_986882_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/986882
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_986882_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_986882_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_986882_v1 | |||
| log in | [Sponge Coral Picoplankton Incubation Experiment - NCBI] - Microbiome profiling of bacterioplankton communities on sponge excurrent water, coral exudate water, and surface reef water. (Collaborative Research: The Influence of Sponge Holobiont Metabolism on Coral Reef Dissolved Organic Matter and Reef Microorganisms) | Sponge exhalent water was collected from Looe Key reef, coral exudates water was collected from a coral incubation at Mote Marine lab, and ambient reef water was collected from Looe Key Reef surface water. All seawater was 0.2 um filtered to use as media in 2L bottles for an incubation experiment. Inoculum from reef surface water (1.6 um filtered) was used for the incubation. Bottles were incubated in the dark for 48 hours and samples were taken at the start (T0) and end (T48) for nutrient and microbiome analysis.\n\ncdm_data_type = Other\nVARIABLES:\nBioproject_Accession (unitless)\nBiosample_accession (unitless)\nSample_Name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nSPUID (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletype2 (unitless)\nfilename2 (unitless)\n... (4 more variables)\n | BCO-DMO | bcodmo_dataset_964182_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782301/ | public | [Synechococcus accessions] - NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay, July 2017 (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients) | NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay.\n\ncdm_data_type = Other\nVARIABLES:\nAccession (unitless)\nSample_Name (unitless)\nSPUID (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nIsolate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_782301_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782301/index.htmlTable | https://www.bco-dmo.org/dataset/782301
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782301.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782301&showErrors=false&email= | BCO-DMO | bcodmo_dataset_782301 |