Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916134_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916134_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_916134_v1/ | public | [Substrate-specific metabolic responses of model marine bacteria] - Metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates (C-CoMP Model Bacteria Physiological Studies) | This dataset includes metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw RNA sequences (50 bp reads in fastq format) have been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA972985 (https://www.ncbi.nlm.nih.gov/bioproject/972985).\n\ncdm_data_type = Other\nVARIABLES:\nSample_Name (unitless)\nAccession (unitless)\nBioProject (unitless)\nOrganism (unitless)\nStrain (unitless)\nTax_ID (unitless)\nGlucose_initial_concentration_uM (micromolar concentration)\nAcetate_initial_concentration_uM (micromolar concentration)\nSample_description (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_916134_v1/index.htmlTable | https://www.bco-dmo.org/dataset/916134
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_916134_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_916134_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_916134_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782301.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782301/ | public | [Synechococcus accessions] - NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay, July 2017 (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients) | NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay.\n\ncdm_data_type = Other\nVARIABLES:\nAccession (unitless)\nSample_Name (unitless)\nSPUID (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nIsolate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_782301_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_782301_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782301/index.htmlTable | https://www.bco-dmo.org/dataset/782301
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782301.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782301&showErrors=false&email= | BCO-DMO | bcodmo_dataset_782301 | ||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739636.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739636 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739636/ | public | [Thaumarchaea transcriptomes] - Nitrosopelagicus brevis CN25 and U25 grown in nitrogen replete and deplete conditions, with subsequent transcriptome sequencing and identification. (Gene content, gene expression, and physiology in mesopelagic ammonia-oxidizing archaea) | Nitrosopelagicus brevis CN25 and U25 were grown in nitrogen replete and deplete conditions, with subsequent transcriptome sequencing.\n\ncdm_data_type = Other\nVARIABLES:\nAccession (unitless)\nSample_Name (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nStrain (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_739636_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739636/index.htmlTable | https://www.bco-dmo.org/dataset/739636
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739636.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739636&showErrors=false&email= | BCO-DMO | bcodmo_dataset_739636 |