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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_854887_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_854887_v1/ public [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids. Larvae were reared under two different temperatures to study temperature-dependent gene regulatory divergence between locally adapted Atlantic silverside populations in 2017. \n\nThe data are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with accession numbers SRR13523227- SRR13523268 associated with BioProject PRJNA694674 and BioSamples SAMN17531688 - SAMN17531729.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBioSample (unitless)\nSample_name (unitless)\nSRA (unitless)\ntaxonomy_id (unitless)\ntaxonomy_name (unitless)\necotype (unitless)\ndev_stage (unitless)\nsex (unitless)\ntissue (unitless)\nsample_type (unitless)\ncross (unitless)\ntreatment (degrees Celsius)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_854887_v1/index.htmlTable https://www.bco-dmo.org/dataset/854887 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_854887_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_854887_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_854887_v1
log in [RNA:DNA measurements - field data] - RNA:DNA measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021 (Counter-gradient Flow of Fatty Acids in Marine Food Webs Through Egg Boons) RNA:DNA measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021.\n\ncdm_data_type = Other\nVARIABLES:\nScientific_name (unitless)\nCommon_name (unitless)\nSample_ID (unitless)\nSite (unitless)\nlat (degrees_north)\nlongitude (degrees_east)\nDate_collected (unitless)\nDate_analyzed (unitless)\nTissue (unitless)\nPrimary_check (unitless)\nRNA_DNA (unitless)\n BCO-DMO bcodmo_dataset_908180_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746344 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746344.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_746344/ public [Seagrasses carbon nitrogen and isotopes - summary] - Summary of carbon and nitrogen concentrations and isotope ratios from samples of eelgrass from Virginia Coastal Lagoons and turtlegrass from St George Sound FL (Toward an Improved Understanding of Blue Carbon: The Role of Seagrasses in Sequestering CO2) This dataset includes a summary of results of carbon and nitrogen analyses on seagrasses collected in the Virginia Coastal Lagoons and from St. George Sound FL. Mean carbon and nitrogen concentrations and their isotope ratios are reported for leaf and root/rhizome samples. Also reported are the standard deviation, standard error, number of samples in the means, and the 95% confidence limits.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (Date Collected, seconds since 1970-01-01T00:00:00Z)\nTissue (unitless)\nvalue (unitless)\nd13C (D13 C, unitless)\nd15N (D15 N, unitless)\npcnt_C_g_per_gDW (Pcnt C G Per G DW, unitless (grams/grams))\npcnt_N_g_per_gDW (Pcnt N G Per G DW, unitless (grams/grams))\nC_to_N (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_746344_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_746344/index.htmlTable https://www.bco-dmo.org/dataset/746344 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_746344.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_746344&showErrors=false&email= BCO-DMO bcodmo_dataset_746344
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934800_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934800_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_934800_v1/ public [Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath) Outbreaks of sea star wasting (SSW) have killed millions of sea stars across over 20 taxa in the last decade alone, threatening the health and stability of coastal communities around the world. While the causative agent remains unknown, it has recently been postulated that hypoxia exposure may play a dominant role in the onset of SSW. We leveraged a study that subjected ochre sea stars to organic matter amendment in a controlled laboratory setting to induce hypoxia and used a repeated sampling design to collect non-invasive tissue samples from both healthy and wasting individuals. Following tag-based RNAseq (TagSeq), we analyzed differential gene expression (DGE) patterns among and within these individuals sampled strategically throughout the 15-day experiment. Transcriptional profiles reveal a progressive change in gene expression accompanying the advancement of SSW, reflecting a transition from asymptomatic stars to the onset of characteristic SSW lesions that progressively worsen until, in some cases, the star dies of their symptoms. Included in this dataset is the accession information for 89 individual TagSeq samples across 20 individual Pisaster ochraceus sea stars at multiple time points during the study to make them available for subsequent re-evaluation. The sequence data have been deposited into the NCBI archive under BioProject PRJNA1116313 and will be publicly available on 2025-08-01.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nbioproject_accession (unitless)\nbioproject_ncbi (unitless)\nassay_type (unitless)\norganism (unitless)\nisolate_id (unitless)\nisolation_source (unitless)\ncollection_date (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntissue (unitless)\nbiomaterial_provider (unitless)\ncollected_by (unitless)\nhost_tissue_sampled (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_934800_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_934800_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_934800_v1/index.htmlTable https://www.bco-dmo.org/dataset/934800 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_934800_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_934800_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_934800_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908189_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908189_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908189_v1/ public [Total lipid measurements - field data] - Total lipid measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021 (Counter-gradient Flow of Fatty Acids in Marine Food Webs Through Egg Boons) Total lipid measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021.\n\ncdm_data_type = Other\nVARIABLES:\nTaxon (unitless)\nCommon_name (unitless)\nSample_ID (unitless)\nSite (unitless)\nlat (degrees_north)\nlongitude (degrees_east)\nDate_collected (unitless)\nDate_analyzed (unitless)\nTissue (unitless)\nPrimary_check (unitless)\nTotal_lipids (milligrams per gram dry weight (mg g-1 dw))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908189_v1/index.htmlTable https://www.bco-dmo.org/dataset/908189 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908189_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908189_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908189_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934772_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934772_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_934772_v1/ public [Whole genome sequence data for Pisaster ochraceus] - Whole genome sequence data for Pisaster ochranceus samples collected from the Pacific coast of North America from July 2004 to May 2018 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath) This dataset includes collection and accession information for whole genome sequence (WGS) data from 65 Pisaster ochraceus (ochre sea star) collected across latitudes ranging from SE Alaska to southern California. The sequence data have been deposited into NCBI SRA archive under BioProject PRJNA1117092 and will be publicly available on 2025-08-01. These data are used to evaluate the population genomic diversity and divergence of spatially and environmentally separated populations of Pisaster ochraceus.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nbioproject_accession (unitless)\nbioproject_ncbi (unitless)\nassay_type (unitless)\norganism (unitless)\nisolation_source (unitless)\ncollection_date (unitless)\niso_collection_date (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntissue (unitless)\nbiomaterial_provider (unitless)\ncollected_by (unitless)\nhost_tissue_sampled (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_934772_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_934772_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_934772_v1/index.htmlTable https://www.bco-dmo.org/dataset/934772 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_934772_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_934772_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_934772_v1

 
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