Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_942884_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_942884_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_942884_v1/ | public | [Biogeochemical Measurements from Surface Waters at the North Shore of Mo'orea, French Polynesia] - Biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia) in September 2017, May 2019, and April 2022 (Collaborative Research: Characterizing microbial transformation of marine DOM at the molecular level using untargeted metabolomic) | This data includes biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia). Sampling took place in September 2017, May 2019, and April 2022. In 2019 and 2022, samples were also collected across three midday Lagrangian transect deployments, following water flowing linearly from ocean-facing forereefs over a reef crest to backreef lagoons. A variety of methods were used including colorimetric detection of inorganic nutrients, high-temperature combustion/oxidation, or chemical oxidation for the analysis of dissolved organic carbon (DOC) and particulate organic carbon and nitrogen (POC and PON) concentrations, isotope ratio mass spectrometry for determining stable carbon and nitrogen isotopes of particulate organic matter (POM), scanning excitation-emissions fluorescence measurements of whole seawater to quantify fluorescent dissolved organic matter (fDOM), flow cytometry-based cell counts to quantify bacterial abundance, and liquid chromatography coupled to tandem mass spectrometry to identify individual chemical features within marine DOM. These data help to quantify how biogeochemical parameters change in this region of the reef as open ocean waters flow onto the reef, over the reef, and then mix with waters in the bay. This work helps us to better identify external nutrients to the reef and how reef organisms modify and cycle carbon, nitrogen, and phosphorus over the reef. The results may be of use to physical, chemical, and biological oceanographers who study tropical reef systems and could inform other studies in the region including those conducted as part of the Mo'orea Coral Reef (MCR) Long Term Ecology Research (LTER) program. The samples were collected, measured (for a subset as noted below), and analyzed primarily by members of Lihini Aluwihare's group.\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\nSampling_Strategy (unitless)\nMassiveID (unitless)\nMS_Sample_ID_1 (unitless)\nMS_Sample_ID_2 (unitless)\nYear (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\n... (41 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_942884_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_942884_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_942884_v1/index.htmlTable | https://www.bco-dmo.org/dataset/942884
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_942884_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_942884_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_942884_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_517839/ | public | [Exp and Survey Biogeochem and Microbial data] - Experimental and survey biogeochemical and microbial data from R/V Point Sur cruises PS1009 and PS1103 in the Santa Barbara Channel from 2010-2011 (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms) | The dataset includes experimental and survey biogeochemical and microbial data. Samples were collected during research cruises in April 2010 and May 2011 in the Santa Barbara Channel.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (text)\ncruise_id (text)\nactivity (text)\nevent (unitless)\nsta_id (alphanumeric)\ncast_type (text)\ncast (alphanumeric)\ndepth_bottom (Depth, meters (m))\ndate_local (unitless)\ntime_local (unitless)\ndecimal_year_local (decimal year)\ndate_gmt (unitless)\ntime_gmt (unitless)\ndecimal_year_gmt (decimal year)\nlatitude (degrees_north)\nlongitude (degrees_east)\nISO_DateTime_Local (ISO Date Time Local, unitless)\ndepth (m)\ndepth_target (Depth, meters (m))\nbottle (integer or text)\nsample (integer)\ncollection_bot_ID (integer)\nphosphate (Mass Concentration Of Phosphate In Sea Water, micromoles per Liter (umol/L))\nsilicate (Mass Concentration Of Silicate In Sea Water, micromolar (uM))\nNO2 (Mole Concentration Of Nitrite In Sea Water, micromoles per Liter (umol/L))\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromoles per Liter (umol/L))\n... (46 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_517839_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_517839/index.htmlTable | https://www.bco-dmo.org/dataset/517839
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_517839.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_517839&showErrors=false&email= | BCO-DMO | bcodmo_dataset_517839 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914186_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914186_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_914186_v1/ | public | [Nutrient and cell count data for incubations] - Nutrient and cell count data from incubations conducted with methylcyclohexane or methylcyclopentane on samples collected from the Gulf of Mexico during June 2015 on R/V Atlantis cruise AT29-02 (Collaborative Research: Chemical and microbiological studies of water-soluble alkanes in the ocean) | Hydrocarbon incubations were conducted with water collected from 1000 meters depth in the Gulf of Mexico across four stations during cruise AT29-02 on the R/V Atlantis. Sample collection occurred June 16-17, 2015. Each incubation was injected with 10 microliters of methylcyclohexane (MCH) or methylcyclopentane (MCP). Each incubation was monitored for oxygen content using remote optical oxygen sensors. After we observed a respiration signal, we sacrificially harvested each bottle for cell counts, nutrients, and DNA. Incubation time varied from 10-31 days. These data were used to assess who consumes these compounds in the deep Gulf of Mexico, over what time frame, and what metabolic pathways bacteria use to consume them.\n\ncdm_data_type = Other\nVARIABLES:\nRank (unitless)\nType (unitless)\nStation (unitless)\nlatitude (Station_latitude, degrees_north)\nlongitude (Station_longitude, degrees_east)\nISO_DateTime_Local (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nPhosphate (micromolar (uM))\nNitrite (micromolar (uM))\nAmmonia (micromolar (uM))\nNitrate (micromolar (uM))\nTotal_Oxygen_Loss (micromolar (uM))\nNormalized_Oxygen_Loss (micromolar (uM))\nTotal_Incubation_Time_Days (days)\nCell_Abundance (cells per milliliter (cells/mL))\nBloom_Onset_Time_Days (days)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_914186_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_914186_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_914186_v1/index.htmlTable | https://www.bco-dmo.org/dataset/914186
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_914186_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_914186_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_914186_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_931936_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_931936_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_931936_v1/ | public | [Winam Gulf Metagenomic Time Series] - Metagenomic Time Series of Winam Gulf, Lake Victoria from 2022-2023 (ASI Lake Victoria project) (IRES Track II: Advanced studies institute on water quality and harmful algal blooms in Lake Victoria) | Compared to the other \"Great Lakes\" (Laurentian Great Lakes of North America and Lake Baikal of Russia) the African Great Lakes have remained widely unstudied. This serves as a substantial research gap within the limnological literature given the African Great Lakes contribute approximately 25% of all global, accessible freshwater. Lake Victoria of the African Great Lakes is notable for its large size - serving as the second largest freshwater lake in the world by surface area. Yet, Lake Victoria is also known for the prolific year-long cyanobacterial blooms that occur throughout her waters such as the Winam Gulf. These blooms are fueled by intense agricultural and anthropogenic development much like other freshwater harmful algal blooms. However, unlike other freshwater blooms such as those occurring in Lake Erie and Lake Taihhu - these cyanobacterial blooms have remained widely uncharacterized (especially using molecular techniques). \n\nThe central study area is the Winam Gulf of Lake Victoria, Kenya. This is a relatively shallow, hypereutrophic system that has various rivers serving as nutrient loading sources (such as the Sondu River). This dataset also contains opportunistic samples collected from a variety of riverine systems and Lakes Simbi and Naivasha. \n\nHere, we present the biological, chemical and physical data corresponding to a two year metagenomic time series of the Winam Gulf, Lake Victoria. We further present the physiochemical data of eight outgroup samples including adjacent riverine systems and Lakes Simbi and Naivasha.\n\ncdm_data_type = Other\nVARIABLES:\nLibrary_ID (unitless)\nSite_Name (unitless)\nReplicate_id (unitless)\nSampleID (unitless)\nStudyID (unitless)\nSample_type (unitless)\nLake_or_river (unitless)\nlatitude (degrees_north)\n... (40 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_931936_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_931936_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_931936_v1/index.htmlTable | https://www.bco-dmo.org/dataset/931936
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_931936_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_931936_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_931936_v1 |