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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_854887_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_854887_v1/ public [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids. Larvae were reared under two different temperatures to study temperature-dependent gene regulatory divergence between locally adapted Atlantic silverside populations in 2017. \n\nThe data are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with accession numbers SRR13523227- SRR13523268 associated with BioProject PRJNA694674 and BioSamples SAMN17531688 - SAMN17531729.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBioSample (unitless)\nSample_name (unitless)\nSRA (unitless)\ntaxonomy_id (unitless)\ntaxonomy_name (unitless)\necotype (unitless)\ndev_stage (unitless)\nsex (unitless)\ntissue (unitless)\nsample_type (unitless)\ncross (unitless)\ntreatment (degrees Celsius)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_854887_v1/index.htmlTable https://www.bco-dmo.org/dataset/854887 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_854887_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_854887_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_854887_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_935908_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_935908_v1/ public [Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish] - Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish collected on the north shore of Mo’orea, French Polynesia, Oct 2020 (CAREER: Testing the effects of predator-derived feces on host symbiont acquisition and health) Understanding how microbial communities in consumer feces may impact ecosystem health may improve conservation and restoration efforts. To test how microbial communities in fish feces may affect coral reef health, we collected fecal samples from ten fish species, ranging from obligate corallivore to grazer/detritivore. Additionally, samples of corals, algae, sediments, and seawater were collected to test whether bacterial taxa in these samples were also represented in fish feces (N = 5-14 per fish, coral, or algae species/genus). All collections were conducted in October 2020 from the back reef (1-2 m depth) and fore reef (5-10 m depth) in Moorea, between LTER sites 1 and 2 of the Moorea Coral Reef (MCR) Long Term Ecological Research (LTER) site. We conducted bacterial 16S rRNA gene metabarcoding on all samples and found that fecal communities of bacteria differed among fish guilds (obligate corallivores, facultative corallivores, grazer/detritivores). We also used real-time PCR to quantify abundances of Vibrio coralliilyticus, a known coral pathogen,  in all fecal samples. Samples were collected and processed, and data were analyzed, by the authors of Grupstra et al., 2023.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nSRA (unitless)\nBioSample (unitless)\norganism (unitless)\nstrain (unitless)\nisolation_source (unitless)\ncollection_date (unitless)\ngeo_loc_name (unitless)\ndepth_r (Depth, m)\nenv_broad_scale (unitless)\nhost_description (unitless)\nhost_tissue_sampled (unitless)\nhost_diet (unitless)\nhost_feces_dCT (cycles)\nhost_AphiaID (unitless)\nhost_ScientificName (unitless)\nhost_LSID (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_935908_v1/index.htmlTable https://www.bco-dmo.org/dataset/935908 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_935908_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_935908_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_935908_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818765.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_818765 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_818765/ public [Diatom Matrix RNAseq] - Transcriptome data for bacteria collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture (Metabolic Currencies of the Ocean Carbon Cycle) Transcriptome data for bacteria Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, Polaribacter dokdonensis MED152, and Dokdonia MED134 collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture. The sequence data description for PRHNA448168 is at https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA448168.\n\ncdm_data_type = Other\nVARIABLES:\nSample_Name (unitless)\nNCBI_Bioproject_Accession (unitless)\nBioSample (Bio Sample, unitless)\nDescription (unitless)\nreplicate (unitless)\nNCBI_Genome_Accession (unitless)\ntaxon_microbe (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_818765/index.htmlTable https://www.bco-dmo.org/dataset/818765 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_818765.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_818765&showErrors=false&email= BCO-DMO bcodmo_dataset_818765
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768550/ public [DYEatom: Metatranscriptome accessions and assembled contigs] - DYEatom Metatranscriptome metadata from RV/Point Sur cruise PS1312 in the Monterey Bay area, June-July 2013 (Linking physiological and molecular aspects of diatom silicification in field populations) Metadata for assembled contigs and ORFS from metatranscriptome analysis from CTD casts in the Monterey Bay area on RV/Point Sur cruise PS1312, June-July 2013. Assembled contigs files are also available; see Supplemental Files.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject_type (Bio Project Type, unitless)\nBioProject_id (Bio Project Id, unitless)\nBioSample (Bio Sample, unitless)\nSample_name (unitless)\nSRA_id (unitless)\nPackage_type (unitless)\nversion (unitless)\nAccession (unitless)\nID (unitless)\ncruise_id (unitless)\nCTD_cast (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate_collection (unitless)\nstation (unitless)\ndepth (m)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_768550_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768550/index.htmlTable https://www.bco-dmo.org/dataset/768550 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768550.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768550&showErrors=false&email= BCO-DMO bcodmo_dataset_768550
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908689_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908689_v1/ public [Gulf of Alaska copepods: annotated transcriptomes] - Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads. The species are ecologically-important members of sub-arctic North Pacific marine zooplankton communities. The de novo assemblies included one generated several years ago plus eight new ones generated from six co-occurring species of calanoid copepods in the Gulf of Alaska. The transcriptomes include the first published ones for Neocalanus plumchrus, Neocalanus cristatus, Eucalanus bungii and Metridia pacifica and three for Neocalanus flemingeri and two for Calanus marshallae. Total RNA from single individuals was used to construct gene libraries that were sequenced on an Illumina Next-Seq platform. Short-sequence reads were assembled with Trinity software and resulting transcripts were annotated using the SwissProt database with additional functional annotation using gene ontology terms and enzyme function. The annotations files are the first ones published for these species. The integrated dataset can be used for quantitative inter- and intra-species comparisons of gene expression patterns across biological processes using the annotations.\n\nThese data are further described in the following publications: Hartline, et al. (2023) (DOI: 10.1038/s41597-023-02130-1), Roncalli, et al. (2022) (DOI: 10.1111/mec.16354), and Roncalli, et al. (2019) (DOI: 10.1038/s42003-019-0565-5)\n\ncdm_data_type = Other\nVARIABLES:\nseq_id (unitless)\nGenbank_accession (unitless)\nSpecies (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nCollection_date (unitless)\nDepth_range (meters (m))\nLife_stage (unitless)\nSex (unitless)\nEntry (unitless)\n... (20 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_908689_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_908689_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908689_v1/index.htmlTable https://www.bco-dmo.org/dataset/908689 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908689_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908689_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908689_v1
log in [Kelletia kelletii: DNA and RNA sequence] - Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion) Understanding the genomic characteristics of non-model organisms can bridge research gaps between ecology and evolution. However, the lack of a reference genome and transcriptome for these species makes their study challenging. Here, we complete the first full genome and transcriptome sequence assembly of the non-model organism Kellet's whelk, Kelletia kelletii, a marine gastropod exhibiting a poleward range expansion coincident with climate change. We used a combination of Oxford Nanopore Technologies, PacBio, and Illumina sequencing platforms and integrated a set of bioinformatic pipelines to create the most complete and contiguous genome documented among the Buccinoidea superfamily to date. Genome validation revealed relatively high completeness with low missing metazoan Benchmarking Universal Single-Copy Orthologs (BUSCO) and an average coverage of ∼70x for all contigs. Genome annotation identified a large number of protein-coding genes similar to some other closely related species, suggesting the presence of a complex genome structure. Transcriptome assembly and analysis of individuals during their period of peak embryonic development revealed highly expressed genes associated with specific Gene Ontology (GO) terms and metabolic pathways, most notably lipid, carbohydrate, glycan, and phospholipid metabolism. We also identified numerous heat shock proteins (HSPs) in the transcriptome and genome that may be related to coping with thermal stress during the sessile life history stage. A robust reference genome and transcriptome for the non-model organism K. kelletii provide resources to enhance our understanding of its ecology and evolution and potential mechanisms of range expansion for marine species facing environmental changes.\n\ncdm_data_type = Other\nVARIABLES:\nRun (unitless)\nAssay_Type (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\nBioProject (unitless)\nBioSample (unitless)\nBioSampleModel (unitless)\nBytes (unitless)\nCenter_Name (unitless)\n... (29 more variables)\n BCO-DMO bcodmo_dataset_945292_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_936069_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_936069_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_936069_v1/ public [Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities] - Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities collected on cruises AT42-22, TN405, and NA108 from May 2019 to Jun 2022 (Collaborative Research: Microbes need frenemies: unveiling microbial relationships with protists and viruses that support deep-sea hydrothermal vent food webs) This dataset is a collection of sample metadata, identified for all samples, and NCBI accession information for samples and sequence runs produced as part of the \"Microbes need frenemies\" project. This project examines trophic interactions among microbial eukaryotes, viruses, bacteria, and archaea at deep-sea hydrothermal vents using metagenomics and metatranscriptomics and characterizes these ecologically-significant interactions, such as mutualism, predator-prey, or virus-host. \n\nWe sequenced samples collected during the 2020 expedition AT42-22 to the Mid-Cayman Rise hydrothermal vent fields, as well as from the 2019 expedition NA108 to the Gorda Ridge and the 2022 expedition TN405 to the Axial seamount. Sequencing targeted archaea, bacteria, and viruses with metagenomics and microbial eukaryotes with metatranscriptomics. We plan to use these data to identify ecologically-significant interactions among protists, viruses, bacteria, and archaea, with a specific emphasis on microbial mortality via viral lysis and eukaryotic grazing. Archived samples were also included in the analysis.\n\ncdm_data_type = Other\nVARIABLES:\nSAMPLE_ID (unitless)\nSHORT_SAMPLE_ID (unitless)\nSAMPLE_NAME (unitless)\nLAB_NUM (unitless)\nCRUISE_ID (unitless)\nFIELD_REGION (unitless)\nYEAR (unitless)\nFIELD_YEAR (unitless)\nVENT (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nORIGIN_TYPE (unitless)\nORIGIN_DESCRIPTION (unitless)\nFRENEMIES_PROJ (unitless)\n... (11 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_936069_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_936069_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_936069_v1/index.htmlTable https://www.bco-dmo.org/dataset/936069 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_936069_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_936069_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_936069_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_948590_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_948590_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_948590_v1/ public [Metatranscriptomic nutrient response experiments - 2021 DY131] - Data from nutrient manipulation experiments (conducted on EXPORTS cruise DY131) aimed at relieving or inducing nutrient stress in phytoplankton and quantifying these responses using metatranscriptomic sequencing (Collaborative Research: Diatoms, Food Webs and Carbon Export - Leveraging NASA EXPORTS to Test the Role of Diatom Physiology in the Biological Carbon Pump) This dataset includes data from nutrient manipulation experiments aimed at relieving or inducing nutrient stress in phytoplankton and quantifying these responses using metatranscriptomic sequencing. Experiments were conducted by adding key macronutrients (N, P, Si) and Fe in different combinations over different growth periods, simulating potential alleviation of in situ nutrient stress or the induction of nutrient stress. Experiments were conducted on the EXports Processes in the Oceans from RemoTe Sensing (EXPORTS) cruise DY131 in the North Atlantic during May of 2021.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nDate_UTC (unitless)\nTime_UTC (unitless)\nEvent (unitless)\nActivity (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nexp_id (unitless)\nIncubation (unitless)\nTreatment (unitless)\nreplicate (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSRA_sample (unitless)\nPhosphate (millimoles per cubic meter (mmol m^3))\nPhosphate_flag (unitless)\nSilicate (millimoles per cubic meter (mmol m^3))\nSilicate_flag (unitless)\nNitrite (millimoles per cubic meter (mmol m^3))\nNitrite_flag (unitless)\n... (8 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_948590_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_948590_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_948590_v1/index.htmlTable https://www.bco-dmo.org/dataset/948590 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_948590_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_948590_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_948590_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922330_v1/ public [Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) High-throughput sequencing study of field-collected Neocalanus flemingeri pre-adults (stage CV) and adult females between 2015 and 2022. Dataset includes information and accession numbers of the raw sequence reads. Zooplankton collections were made in the northern Gulf of Alaska in collaboration with the Seward Long-term Monitoring Program and the northern Gulf of Alaska Long-term Ecological Research Program (LTER). Pre-adults were collected during the spring from multiple stations, sorted from net collections and immediately preserved. Adult females were collected mostly from Prince William Sound, but also on one occasion from the Gulf of Alaska. Adult females were collected from depth during diapause and preserved upon net retrieval.  In addition, time series data were generated in three different years to characterize the post-diapause period through the spawning phase. The purpose of the data collection is to generate gene expression profiles during different years and seasons to evaluate developmental stage and physiological state.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDepth_Range (meters (m))\nDate (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nLife_Stage (unitless)\nSex (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSample_Accession (unitless)\nSRA_Run_Accession (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922330_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922330_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922330_v1/index.htmlTable https://www.bco-dmo.org/dataset/922330 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922330_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922330_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922330_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782058.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782058 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782058/ public [reconstructed genomes] - Reconstructed genomes from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling) Reconstructed genomes from North Pond\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_id (unitless)\nAssembly (unitless)\nLevel (unitless)\nWGS (unitless)\nBioSample (Bio Sample, unitless)\nIsolate (unitless)\nTaxonomy (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782058/index.htmlTable https://www.bco-dmo.org/dataset/782058 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782058.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782058&showErrors=false&email= BCO-DMO bcodmo_dataset_782058
log in [Seagrass Microbiome Data] -  (Collaborative Research: The role of a keystone pathogen in the geographic and local-scale ecology of eelgrass decline in the eastern Pacific) This dataset includes sample collection information and sequence accessions for 16S rRNA amplicon sequencing of eelgrass leaf and surrounding water column bacteria from 32 eelgrass meadows across latitudes from 55 to 32° N in the Northeastern Pacific during July and August 2019.  Sequence Read Archive (SRA) Experiments and BioSamples can be accessed from the NCBI BioProject PRJNA802566 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA802566/)\n\nEelgrass, Zostera marina, is impacted by outbreaks of wasting disease caused by the opportunistic pathogen Labyrinthula zosterae. We investigated how Z. marina phyllosphere microbial communities vary with rising wasting disease lesion prevalence and severity relative to plant and meadow characteristics like shoot density, longest leaf length, and temperature across 23° latitude in the Northeastern Pacific. We sampled 32 eelgrass meadows across latitudes from 55 to 32° N in the Northeastern Pacific during July and August 2019. This range included six regions (AK=Alaska, BC=British Columbia, WA=Washington, OR=Oregon, BB=Bodega Bay Northern California, SD=San Diego Southern California), with 5–6 meadows per region. The location of each region is AK: N 55° 32' 27.124” W 133° 11' 1.0546, BC: N 51° 48' 30.1469” W 128° 13' 27.2182, WA: N 48° 36' 4.9725” W 122° 59' 56.4203, OR: N 44° 69 43.717” W 124° 89 22.7337, BB: N 38° 14' 30.3218” W 122° 58' 32.5723, SD: N 32° 47' 37.5929” W 117° 12' 57.1071”. We selected eelgrass meadows within each region that had consistently high cover of eelgrass in recent years.\n\ncdm_data_type = Other\nVARIABLES:\nsample_title (unitless)\nSampleType (unitless)\nRegionName (unitless)\nSiteCode (unitless)\nTissueType (unitless)\nLesionStatus (unitless)\ncollection_date (unitless)\nLocationName (unitless)\nTidalHeight (unitless)\nTransect (unitless)\n... (8 more variables)\n BCO-DMO bcodmo_dataset_933635_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775451.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775451 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775451.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_775451/ public [Sponge holobiont accessions and metadata] - NCBI accessions and metadata associated with Caribbean sponge metagenomes collected from Curacao, Belize, Cayman Islands and St. Croix, 2009 and 2017-2018 (Collaborative Research: Dimensions: Evolutionary Ecology of Sponges and Their Microbiome Drives Sponge Diversity on Coral Reefs) NCBI accessions and metadata associated with Caribbean sponge metagenomes collected from Curacao, Belize, Cayman Islands and St. Croix, 2009 and 2017-2018.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (Bio Project, unitless)\nBioSample (Bio Sample, unitless)\nSample_name (unitless)\nsample_type (unitless)\nhost (unitless)\ncollection_date (unitless)\ngeographic_location (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsource_material_identifiers (unitless)\ndepth_ (Depth, feet seawater (fsw) or meters)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_775451_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_775451/index.htmlTable https://www.bco-dmo.org/dataset/775451 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_775451.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_775451&showErrors=false&email= BCO-DMO bcodmo_dataset_775451
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949777_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_949777_v1/ public [Transcriptomics of Phytoplankton Cultures Grown on Various Phosphorus Sources] - Transcriptomics of phytoplankton cultures grown on various phosphorus sources in a laboratory experiment (Phosphonate Utilization by Eukaryotic Phytoplankton: Who, How, and Where?) A laboratory experiment was carried out to characterize the growth and physiological response of three species of eukaryotic phytoplankton grown with inorganic phosphate (+P), without phosphate (-P), and with methylphosphonate (+MPN) and aminoethylphosphonate (+AEPN) as the sole sources of phosphorus (P). Data reported in this dataset are the transcriptomic reads, in biological triplicate, of these culture growth substrate combinations.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBiosample (unitless)\nTreatment (unitless)\nReplicate (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nStrain (unitless)\nURL (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_949777_v1/index.htmlTable https://www.bco-dmo.org/dataset/949777 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_949777_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_949777_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_949777_v1
log in [Wild copepod pool-seq data] - Pool-seq data from wild populations of copepods in the North Sea from May 2014 (Evolutionary genomics of a copepod project) (Evolutionary Responses to Global Changes in Salinity and Temperature) This dataset was generated from studies of wild populations of Eurytemora affinis (E. affinis). Copepod populations were collected from three locations in the North Sea using bongo nets with 100 micrometer (μm) mesh and stored in RNAlater. Sampling locations included two freshwater lakes and one brackish estuary. Individual copepods (100 individuals, 50:50 male:female) were pooled and their DNA was extracted. Paired-end whole-genome sequencing libraries were prepared using the Illumina Nextera DNA kit (Illumina, Inc.) and sequenced on three lanes of an Illumina HiSeq 2000 sequencer, generating an average of approximately 158 million paired-end (100 bp) reads per pool. These data have been deposited in the National Center for Biotechnology Information (NCBI) under BioProject number PRJNA923656.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nCollection_Date (unitless)\nSample_Code (unitless)\nSample_Salinity (Practical salinity units (PSU))\nSample_Temperature (degrees Celsius)\nLatitude (degrees_north)\nLongitude (degrees_east)\nBioSample (unitless)\nSRA_Run (unitless)\n BCO-DMO bcodmo_dataset_897977_v1

 
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