Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756510 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756510.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_756510/ | public | [Breviolum antillogorgium cell counts] - Cell counts of Breviolum antillogorgium cultures isolated from the octocoral Antillogorgia bipinnata by sample and treatment for cultures historically grown at 26C and 30C and reciprocally grown at 26C and 30C, Oct - Dec 2018 (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs) | Cell counts of Breviolum antillogorgium cultures isolated from the octocoral Antillogorgia bipinnata by sample and treatment for cultures historically grown at 26 and 30 degrees C and reciprocally grown at 26 and 30 degrees C\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nDay (days)\nCulture_ID (unitless)\nCount_1 (cells x 10^4/milliliter (cells x 10^4 ml-1))\nCount_2 (cells x 10^4/milliliter (cells x 10^4 ml-1))\nCount_3 (cells x 10^4/milliliter (cells x 10^4 ml-1))\nCount_4 (cells x 10^4/milliliter (cells x 10^4 ml-1))\nCount_5 (cells x 10^4/milliliter (cells x 10^4 ml-1))\nCount_6 (cells x 10^4/milliliter (cells x 10^4 ml-1))\nMean (cells x 10^4/milliliter (cells x 10^4 ml-1))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_756510/index.htmlTable | https://www.bco-dmo.org/dataset/756510
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_756510.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_756510&showErrors=false&email= | BCO-DMO | bcodmo_dataset_756510 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756404.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756404 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_756404.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_756404/ | public | [Breviolum antillogorgium microsatellite loci] - Microsatellite loci for Breviolum antillogorgium cultures isolated from the octocoral Antillogorgia bipinnata and used in 2018 growth experiments to compare growth at 26 and 30 degrees C (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs) | Microsatellite loci for Breviolum antillogorgium cultures isolated from the octocoral Antillogorgia bipinnata and used in 2018 growth experiments to compare growth at 26 and 30 degrees C\n\ncdm_data_type = Other\nVARIABLES:\nCulture_ID (Unitless)\nIncubation_Temperature (Degree Celsius)\nHost (Unitless)\nPutative_Species (Unitless)\nLocation (Unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nState_Country (unitless)\nOcean (unitless)\nHost_stage (unitless)\nAxenic (unitless)\nIsolated_by (unitless)\nYear_isolated (unitless)\nITS2_type (Unitless)\ncp_type (base pairs (bp))\nGV_1C (GV 1 C, base pairs (bp))\nB7SYM34 (B7 SYM34, base pairs (bp))\nBYSYM36 (base pairs (bp))\nCA6_38 (base pairs (bp))\nB7SYM4 (B7 SYM4, base pairs (bp))\nB7SYM8 (B7 SYM8, base pairs (bp))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_756404_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_756404/index.htmlTable | https://www.bco-dmo.org/dataset/756404
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_756404.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_756404&showErrors=false&email= | BCO-DMO | bcodmo_dataset_756404 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728215.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728215 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728215.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_728215/ | public | [Cultures isolated from A. bipinnata 2008-2016] - Symbiodinium cultures isolated from the octocoral Antillogorgia bipinnata in the Florida Keys and processed at Coffroth lab at the University at Buffalo in 2008, 2013 and 2016 (Host Symbiont Temp Response project) (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs) | Symbiodinium cultures isolated from the octocoral Antillogorgia bipinnata in the Florida Keys and processed at Coffroth lab at the University at Buffalo in 2008, 2013 and 2016.\n\ncdm_data_type = Other\nVARIABLES:\nCulture_ID (unitless)\nIncubation_Temperature (degree Celsius (C))\nHost (unitless)\nPutative_Species (unitless)\nLocation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nState_Country (unitless)\nOcean (unitless)\nHost_stage (unitless)\nAxenic (unitless)\nIsolated_by (unitless)\nYear_isolated (years)\nClade (unitless)\ncp_type (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_728215_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_728215/index.htmlTable | https://www.bco-dmo.org/dataset/728215
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_728215.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_728215&showErrors=false&email= | BCO-DMO | bcodmo_dataset_728215 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911338_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911338_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911338_v1/ | public | [Cyanobacteria cultures used to generate DNA reference library] - Cyanobacteria cultures used to generate DNA reference library from samples collected from sites in Alpena and Monroe, Michigan and Palm Coast, Florida between May and June 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) | These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and sample type for samples used to develop the cultures.\nEach of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Accession (unitless)\nCulture_ID (unitless)\nGenus (unitless)\nSpecies (unitless)\nMedia (unitless)\nCollection_Date (unitless)\nLocation (unitless)\nSample_Type (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911338_v1/index.htmlTable | https://www.bco-dmo.org/dataset/911338
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911338_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911338_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_911338_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911008_v1/ | public | [Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) | These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and water parameter information from samples used to develop the cultures, and growth medium.\nEach of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Accession (unitless)\nCulture_ID (unitless)\nGenus (unitless)\nSpecies (unitless)\nVariety (unitless)\nCollection_ID (unitless)\nMedia (unitless)\nCollection_Date (Month/Day/Year)\nLocation (unitless)\nSample_Type (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\nTemp (Celsius (°C))\nCond (Microsiemens / centimeter (μS/cm))\nTDS (Grams/liter (g/L))\npH (unitless)\nORP (Millivolts (mV))\nNTU (Nephelometric Turbidity Units (NTU))\nODO (Percentage saturation)\n... (6 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911008_v1/index.htmlTable | https://www.bco-dmo.org/dataset/911008
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911008_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911008_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_911008_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_812240 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_812240.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_812240/ | public | [M. jannaschii high/low H2: isotopes and fractionation factors] - Carbon isotopic compositions and fractionation factors of M. jannaschii in high and low hydrogen (H2) environments (Bioenergetic influences upon carbon flow in alkaliphilic sulfate-reducing microbial populations with relevance to the subsurface biosphere at the Lost City Hydrothermal Field) | Carbon isotopic compositions and fractionation factors of amino acids and squalenoid lipids in Methanocaldococcus jannaschii in high and low hydrogen (H2) environments.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nCulture_ID (unitless)\nd13C_ppt_Ala (D13 C Ppt Ala, parts per thousand (ppt))\nd13C_ppt_Gly (D13 C PPT GLY, parts per thousand (ppt))\nd13C_ppt_Thr (D13 C PPT THR, parts per thousand (ppt))\nd13C_ppt_Ser (D13 C Ppt Ser, parts per thousand (ppt))\nd13C_ppt_Val (D13 C Ppt Val, parts per thousand (ppt))\nd13C_ppt_Leu (D13 C Ppt Leu, parts per thousand (ppt))\nd13C_ppt_Iso (D13 C Ppt Iso, parts per thousand (ppt))\nd13C_ppt_Pro (D13 C Ppt Pro, parts per thousand (ppt))\nd13C_ppt_Glu (D13 C Ppt Glu, parts per thousand (ppt))\nd13C_ppt_Phe (D13 C Ppt Phe, parts per thousand (ppt))\nWeighted_Avg_d13C_THAA_ppt (Weighted Avg D13 C THAA Ppt, parts per thousand (ppt))\nd13C_ppt_Sq_3 (D13 C PPT SQ 3, parts per thousand (ppt))\nd13C_ppt_Sq_4 (D13 C PPT SQ 4, parts per thousand (ppt))\nd13C_ppt_Sq_5 (D13 C PPT SQ 5, parts per thousand (ppt))\nd13C_ppt_Sq_6 (D13 C PPT SQ 6, parts per thousand (ppt))\nWeighted_Avg_ppt_d13C_Sq (Weighted Avg Ppt D13 C Sq, parts per thousand (ppt))\nDIC_mM_To (DIC M M To, milliMolar (mM))\nDIC_mM_Tf (DIC M M Tf, milliMolar (mM))\nTFAA_uM_To (TFAA U M To, microMolar (uM))\nTFAA_uM_Tf (TFAA U M Tf, microMolar (uM))\nTHAA_uM_To (THAA U M To, microMolar (uM))\nTHAA_uM_Tf (THAA U M Tf, microMolar (uM))\nFractionation_factor_ppt_eCO2_CH4 (Fractionation Factor Ppt E CO2 CH4, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_B (Fractionation Factor Ppt E CO2 B, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_AA (Fractionation Factor Ppt E CO2 AA, parts per thousand (ppt))\nFractionation_factor_ppt_eCO2_squalenoids (Fractionation Factor Ppt E CO2 Squalenoids, parts per thousand (ppt))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_812240/index.htmlTable | https://www.bco-dmo.org/dataset/812240
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_812240.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_812240&showErrors=false&email= | BCO-DMO | bcodmo_dataset_812240 |