Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_998962_v1/ | public | [Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite) | For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline. \n\nThis dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled \"Co-phylogeographic structure in a disease-causing parasite and its oyster host.\" This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361.\n\ncdm_data_type = Other\nVARIABLES:\nBioSample (unitless)\nsample_name (unitless)\norganism (unitless)\nisolate (unitless)\nhost (unitless)\nisolation_source (unitless)\ngeo_loc_name (unitless)\ntissue (unitless)\ndate_collection (unitless)\nsiteName (unitless)\nState (unitless)\nRegion (unitless)\nRegion2 (unitless)\n... (5 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_998962_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_998962_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_998962_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/998962
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_998962_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_998962_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_998962_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768550.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768550/ | public | [DYEatom: Metatranscriptome accessions and assembled contigs] - DYEatom Metatranscriptome metadata from RV/Point Sur cruise PS1312 in the Monterey Bay area, June-July 2013 (Linking physiological and molecular aspects of diatom silicification in field populations) | Metadata for assembled contigs and ORFS from metatranscriptome analysis from CTD casts in the Monterey Bay area on RV/Point Sur cruise PS1312, June-July 2013. Assembled contigs files are also available; see Supplemental Files.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject_type (Bio Project Type, unitless)\nBioProject_id (Bio Project Id, unitless)\nBioSample (Bio Sample, unitless)\nSample_name (unitless)\nSRA_id (unitless)\nPackage_type (unitless)\nversion (unitless)\nAccession (unitless)\nID (unitless)\ncruise_id (unitless)\nCTD_cast (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate_collection (unitless)\nstation (unitless)\ndepth (m)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_768550_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_768550_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768550/index.htmlTable | https://www.bco-dmo.org/dataset/768550
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768550.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768550&showErrors=false&email= | BCO-DMO | bcodmo_dataset_768550 |