Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700773 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700773.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700773/ | public | [13C incubation cell counts] - Counts of Prochlorococcus from on-deck incubations with 13C-bicarbonate as part of DNA-SIP experiments conducted on Hawaii Ocean Time-series (HOT) cruises, HOT283 and HOT288 in 2016 (Microbial ecology of coexisting ecotypes: Are all Prochlorococcus equal?) | Counts of Prochlorococcus from on-deck incubations with 13C-bicarbonate as part of DNA-SIP experiments conducted on Hawaii Ocean Time-series (HOT) cruises, HOT283 and HOT288 in 2016.\n\ncdm_data_type = Other\nVARIABLES:\ncruise (unitless)\nincubation (unitless)\ndepth2 (Depth, unitless)\ntimepoint (hours)\nreplicate (unitless)\nprochlorococcus (cells per milliliter (cells/mL))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700773/index.htmlTable | https://www.bco-dmo.org/dataset/700773
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700773.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700773&showErrors=false&email= | BCO-DMO | bcodmo_dataset_700773 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745527/ | public | [18S rRNA gene tag sequences from DNA and RNA] - NCBI accession metadata for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) | Raw DNA and RNA V4 tag sequences include spatially and temporally distinct samples from coastal California. Samples were collected in Niskin bottles with a CTD rosette at the San Pedro Ocean Time-series (SPOT) between April of 2013 and January of 2014. This dataset contains sequence data accession numbers and metadata for the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP070577, BioProject: PRJNA311248).\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletpe2 (unitless)\nfilename2 (unitless)\ndepth2 (Depth, various)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_745527_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745527/index.htmlTable | https://www.bco-dmo.org/dataset/745527
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745527.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745527&showErrors=false&email= | BCO-DMO | bcodmo_dataset_745527 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775547 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_775547.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_775547/ | public | [Carbon Mineralization] - Barataria Bay carbon mineralization and biogeochemical properties from nine soil cores (Fate of Coastal Wetland Carbon Under Increasing Sea Level Rise: Using the Subsiding Louisiana Coast as a Proxy for Future World-Wide Sea Level Projections) | Nine soil cores (1 m deep) were collected from three sites within Barataria Bay, LA (USA). Both the biogeochemical properties of the soils with depth were determined, as well as the impacts of the introduction of oxygenated seawater on carbon mineralization rates.\n\ncdm_data_type = Other\nVARIABLES:\nsite_id (unitless)\nreplicate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth2 (Depth, centimeters (cm))\nnag_aerob (nmol MUF g−1 min−1)\nap_aerob (nmol MUF g−1 min−1)\nbg_aerob (nmol MUF g−1 min−1)\nxy_aerob (nmol MUF g−1 min−1)\ncb_aerob (nmol MUF g−1 min−1)\nextractable_nitrate_aerob (Mole Concentration Of Nitrate In Sea Water, mg kg-1)\nextractable_ammonium_aerob (Mole Concentration Of Ammonium In Sea Water, mg kg-1)\nextractable_srp_aerob (mg kg-1)\nmicrobial_biomass_carbon_aerob (mg kg-1)\npotentially_mineralizable_nitrate_aerob (Mole Concentration Of Nitrate In Sea Water, mg NH4+ kg -1 d−1)\npotentially_mineralizable_ammonium_aerob (Mole Concentration Of Ammonium In Sea Water, mg NH4+ kg -1 d−1)\ncarbon_dioxide_rate_aerob (mg CO2-C kg−1 h−1)\nnag_anaerob (nmol MUF g−1 min−1)\nap_anaerob (nmol MUF g−1 min−1)\nbg_anaerob (nmol MUF g−1 min−1)\nxy_anaerob (nmol MUF g−1 min−1)\ncb_anaerob (nmol MUF g−1 min−1)\nextractable_nitrate_anaerob (Mole Concentration Of Nitrate In Sea Water, mg kg-1)\nextractable_ammonium_anaerob (Mole Concentration Of Ammonium In Sea Water, mg kg-1)\nextractable_srp_anaerob (mg kg-1)\n... (23 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_775547_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_775547/index.htmlTable | https://www.bco-dmo.org/dataset/775547
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_775547.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_775547&showErrors=false&email= | BCO-DMO | bcodmo_dataset_775547 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767391.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767391 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767391.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_767391/ | public | [Neuse River Estuary WQ] - Biological, chemical, and physical water quality indicators of the Neuse River, North Carolina from 2008 through 2013 (Collaborative Research: Regulation of Phytoplankton Dynamics in Mid-Atlantic Estuaries Subject to Climatic Perturbations) | The Neuse River Estuary Water Quality Dataset is a compilation of the biological, chemical and physical water quality data that was collected along the length of the Neuse River Estuary, NC from March 14, 1985 to February 15, 1989 and from January 24, 1994 to the present. The primary purpose of this dataset was to provide long-term environmental information to supplement experimental, process-based research, including the Atlantic Coast Environmental Indicators Consortium (ACE-INC) project as well as other laboratory studies.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nYear (unitless)\nSeason (unitless)\nStation (unitless)\nSource (unitless)\ndepth2 (Depth, meters (m))\nYSI_Time (unitless)\ndepth (YSI Depth, m)\nYSI_Temp (degrees Celsius)\nYSI_SpecCond (YSI Spec Cond, milli Siemens per centimeter)\nYSI_Salinity (Sea Water Practical Salinity, parts per thousand)\nYSI_DOsat (unitless (percent))\nYSI_DO (milligrams per liter)\nYSI_pH (YSI P H, unitless)\nYSI_Turbidity (NTU)\nYSI_Chlraw (relative fluorescence units)\nYSI_Chl (micrograms per liter)\nYSI_BP (millimeters of mercury)\nSecchi (meters)\nKd (per meter)\nCdom_Corrected (microgram per liter of quinine sulfate.)\nPOC (Particulate Organic Carbon, micrograms of carbon per liter)\n... (47 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_767391_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_767391/index.htmlTable | https://www.bco-dmo.org/dataset/767391
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_767391.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_767391&showErrors=false&email= | BCO-DMO | bcodmo_dataset_767391 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_789136 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_789136/ | public | [Ocean Crust Microbiome Amplicon Metadata] - Synthesis of publicly-available sequence datasets of the 16S rRNA gene in environmental DNA extracted from seafloor and subseafloor samples from the Dorado outcrop, Lō'ihi Seamount, North Pond, and Juan de Fuca Ridge flank (Microbial activity in the crustal deep biosphere) | To summarize crustal bacterial and archaeal taxa for this review, we synthesized publicly-available sequence datasets of the 16S rRNA gene in environmental DNA extracted from seafloor and subseafloor basalts generated using 454, Illumina and Ion Torrent amplicon platforms. These include seafloor basalts from the Dorado Outcrop and the L\\u014d'ihi Seamount in the Pacific Ocean and subseafloor basalts from North Pond on the western flank of the Mid-Atlantic Ridge and the Juan de Fuca Ridge flank in the northeastern Pacific Ocean. Datasets from rock colonization experiments conducted in the subseafloor at the Juan de Fuca Ridge flank site were also included, as well as microbial community surveys of the subseafloor crustal fluids from the anoxic Juan de Fuca site and the oxic North Pond site.\n\ncdm_data_type = Other\nVARIABLES:\nPlot_Order (unitless)\nSample_Name (unitless)\nSRA_Run (unitless)\nSRA_LibraryName (SRA Library Name, unitless)\nStudy_Nickname (unitless)\nSample_Type (unitless)\nTemp (Temperature, unitless)\nLocation (unitless)\ndepth2 (Depth, unitless)\nSequencer_Type (unitless)\nregion16S (Region16 S, unitless)\nPrimers (unitless)\nDNAextraction (unitless)\nDOI (unitless)\nSRA_Study (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_789136/index.htmlTable | https://www.bco-dmo.org/dataset/789136
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_789136.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_789136&showErrors=false&email= | BCO-DMO | bcodmo_dataset_789136 |