Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914399_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914399_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_914399_v1/ | public | [Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset] - 18S rRNA amplicon sequencing of microbial eukaryotes from the Mid-Cayman Rise acquired Jan-Feb, 2020 (Probing subseafloor microbial interactions via hydrothermal vent fluids: A focus on protists) | Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from two geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. Piccard and Von Damm vent fields are situated 20 km apart at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. This data adds to our growing knowledge of the biogeography of deep-sea microbial eukaryotes.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nInstrument (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\nSample_Accession (unitless)\nTotal_Size_Mb (Mb)\nTotal_Bases (bp)\nLibrary_Name (unitless)\nLibrary_Strategy (unitless)\nLibrary_Source (unitless)\nLibrary_Selection (unitless)\nVent_field (unitless)\nCollection (unitless)\nVent_name (unitless)\nDiveID (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_914399_v1/index.htmlTable | https://www.bco-dmo.org/dataset/914399
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_914399_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_914399_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_914399_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922330_v1/ | public | [Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) | High-throughput sequencing study of field-collected Neocalanus flemingeri pre-adults (stage CV) and adult females between 2015 and 2022. Dataset includes information and accession numbers of the raw sequence reads. Zooplankton collections were made in the northern Gulf of Alaska in collaboration with the Seward Long-term Monitoring Program and the northern Gulf of Alaska Long-term Ecological Research Program (LTER). Pre-adults were collected during the spring from multiple stations, sorted from net collections and immediately preserved. Adult females were collected mostly from Prince William Sound, but also on one occasion from the Gulf of Alaska. Adult females were collected from depth during diapause and preserved upon net retrieval. In addition, time series data were generated in three different years to characterize the post-diapause period through the spawning phase. The purpose of the data collection is to generate gene expression profiles during different years and seasons to evaluate developmental stage and physiological state.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Accession (unitless)\nExperiment_Title (unitless)\nOrganism_Name (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDepth_Range (meters (m))\nDate (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nLife_Stage (unitless)\nSex (unitless)\nBioProject (unitless)\nBioSample (unitless)\nSample_Accession (unitless)\nSRA_Run_Accession (unitless)\nStudy_Accession (unitless)\nStudy_Title (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922330_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922330_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922330_v1/index.htmlTable | https://www.bco-dmo.org/dataset/922330
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922330_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922330_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_922330_v1 |